Rorug02G0404200

Lipase (class 3)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0009960
Physical Location & Seq
Reverse (-)
51643108 .. 51645130
2023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0404200.1

Sequence Viewer

Length: 279 bp
ATGCATCTCACACAGGTTTGGCTGGAAAGTTCTACCGTATTTACTGGACAATACTCCAGCAGTGGAGGTCCTTGCAATAGAAATGGTGATAAGGGACACGTTGCTGAGGGTGACAGGTATGCTTGGGATCCACCAATCCAGAGGCCTGGATGTTTGACTCACAGCATTCAAGAAGTGCAGCTTTGGGGGTTTCATGGGAACGATGAGTTATTGGCAGTGGTTGAGTACTTTCAGCAGATTTTAGCTACAATCAGGGAGTTTGACATCATCATCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

92

Amino Acids

10.38

Weight (kDa)

4.88

Isoelectric Point (pI)

35.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 122, 135
AfaI GTAC 1 cut(s) 227
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 1 cut(s) 170
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 2 cut(s) 181, 245
AluI AGCT 2 cut(s) 181, 245
AlwI GGATC 2 cut(s) 122, 135
AoxI GGCC 1 cut(s) 143
ApeKI GCWGC 1 cut(s) 178
AspS9I GGNCC 1 cut(s) 68
AsuHPI GGTGA 3 cut(s) 98, 122, 265
AvaII GGWCC 1 cut(s) 68
BamHI GGATCC 1 cut(s) 127
BbvCI CCTCAGC 1 cut(s) 105
BbvI GCAGC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 147
BisI GCNGC 1 cut(s) 179
BlsI GCNGC 1 cut(s) 180
BmcAI AGTACT 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 147
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 147
BmsI GCATC 1 cut(s) 13
BpmI CTGGAG 1 cut(s) 40
Bpu10I CCTNAGC 1 cut(s) 105
Bse1I ACTGG 1 cut(s) 49
BseBI CCWGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 155
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 190
BsgI GTGCAG 1 cut(s) 197
BshFI GGCC 1 cut(s) 145
BslFI GGGAC 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 108
BsmI GAATGC 1 cut(s) 165
BsnI GGCC 1 cut(s) 145
Bsp143I GATC 1 cut(s) 127
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 129
BspPI GGATC 2 cut(s) 122, 135
BsrI ACTGG 1 cut(s) 49
BssMI GATC 1 cut(s) 127
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 37
BstDEI CTNAG 1 cut(s) 105
BstF5I GGATG 1 cut(s) 155
BstKTI GATC 1 cut(s) 130
BstMBI GATC 1 cut(s) 127
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 145
BstV1I GCAGC 1 cut(s) 190
BstX2I RGATCY 1 cut(s) 127
BstXI CCANNNNNNTGG 1 cut(s) 146
BstYI RGATCY 1 cut(s) 127
BsuRI GGCC 1 cut(s) 145
BtsCI GGATG 1 cut(s) 155
BtsI GCAGTG 2 cut(s) 67, 222
BtsIMutI CAGTG 2 cut(s) 67, 222
Cfr13I GGNCC 1 cut(s) 68
Csp6I GTAC 1 cut(s) 226
CviAII CATG 1 cut(s) 194
CviJI RGCY 4 cut(s) 22, 145, 181, 245
CviKI_1 RGCY 4 cut(s) 22, 145, 181, 245
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 1 cut(s) 105
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
Eco147I AGGCCT 1 cut(s) 145
Eco47I GGWCC 1 cut(s) 68
EcoO109I RGGNCCY 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 145
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 197
FaiI YATR 2 cut(s) 120, 195
FalI AAGNNNNNCTT 2 cut(s) 165, 197
FaqI GGGAC 1 cut(s) 108
FatI CATG 1 cut(s) 193
Fnu4HI GCNGC 1 cut(s) 179
FokI GGATG 1 cut(s) 162
Fsp4HI GCNGC 1 cut(s) 179
GluI GCNGC 1 cut(s) 179
GsuI CTGGAG 1 cut(s) 40
HaeIII GGCC 1 cut(s) 145
Hin1II CATG 1 cut(s) 197
HinfI GANTC 1 cut(s) 157
HphI GGTGA 3 cut(s) 98, 122, 265
Hpy188III TCNNGA 2 cut(s) 139, 170
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 3 cut(s) 4, 75, 178
HpyF3I CTNAG 1 cut(s) 105
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 1 cut(s) 197
Kzo9I GATC 1 cut(s) 127
LpnPI CCDG 8 cut(s) 8, 30, 70, 100, 132, 152, 159, 238
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 1 cut(s) 13
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 1 cut(s) 110
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MflI RGATCY 1 cut(s) 127
MlyI GAGTC 1 cut(s) 151
MnlI CCTC 3 cut(s) 59, 100, 135
Mph1103I ATGCAT 1 cut(s) 6
MspR9I CCNGG 1 cut(s) 147
Mva1269I GAATGC 1 cut(s) 165
MvaI CCWGG 1 cut(s) 147
NdeII GATC 1 cut(s) 127
NlaIII CATG 1 cut(s) 197
NlaIV GGNNCC 1 cut(s) 129
NmuCI GTSAC 1 cut(s) 110
NsiI ATGCAT 1 cut(s) 6
PceI AGGCCT 1 cut(s) 145
PctI GAATGC 1 cut(s) 165
PkrI GCNGC 1 cut(s) 180
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
PpuMI RGGWCCY 1 cut(s) 68
Psp5II RGGWCCY 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 129
PspPI GGNCC 1 cut(s) 68
PspPPI RGGWCCY 1 cut(s) 68
PsuI RGATCY 1 cut(s) 127
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SatI GCNGC 1 cut(s) 179
Sau3AI GATC 1 cut(s) 127
Sau96I GGNCC 1 cut(s) 68
ScaI AGTACT 1 cut(s) 227
SchI GAGTC 1 cut(s) 151
ScrFI CCNGG 1 cut(s) 147
SetI ASST 7 cut(s) 18, 70, 102, 119, 183, 247, 278
SfaNI GCATC 1 cut(s) 13
SinI GGWCC 1 cut(s) 68
SseBI AGGCCT 1 cut(s) 145
StuI AGGCCT 1 cut(s) 145
StyD4I CCNGG 1 cut(s) 145
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 102
TatI WGTACW 1 cut(s) 225
TscAI CASTG 2 cut(s) 67, 222
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 1 cut(s) 178
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 182
TspRI CASTG 2 cut(s) 67, 222
VpaK11BI GGWCC 1 cut(s) 68
ZrmI AGTACT 1 cut(s) 227
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.