Rorug02G0585100

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012812
Physical Location & Seq
Forward (+)
70787153 .. 70791407
4255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0585100.1

Sequence Viewer

Length: 2295 bp
ATGAAGTTTGGGAAGGAATTTGTGTCCCAAATGGTGCCGGAATGGCAAGAAGCGTACTTGGACTACAACTCACTCAAGGCTCTCTTGAAAGACCTCTTGCGTTTTCAACAGACCAGAACACCAACAGCAATGGCTTCAACTCCAAATGGTTCAGTTTTGAACAGGAGGGCATCCCTCTACAGAGCCTTTAGTGGGCTAACAAGCCGGCACAGGGACTCTCCGAGGGCGAAAGAGGATGAAGAGATTCTTGTCACTGAAGATGGGGAGGATGGGAGGTACCAGACGTTTGTGACGGTCTCGGATGAGGAAAGAGGGTATGAGGTTAAGTTTTTCAATGAGCTTGATCATGAGTTCAACAAAGTGGTTGGGTTCTACAAGAAGAAAGTTAAAGAAGTGGTGGAGGAGGCAGATGAGTTGAGTAGACAGATGGATACTTTGATTGCTCTGAGGCTCAAGGTAGATAATCCTATGGTGGATTTTGGGGATGGTCCAAATTCAGCTGTTCATCCCATAAATGGCAGAAGAGCAGGAGGGCAGCACATGGATGTGATTGAGGAAGTGGAGATGATGGAAGATGAAGACAGAGGAGACAATGAACCAAAAACTAGAACCCAGAAGGCAAATGGAGGTATAGAGGGCTTTAAACCTCCTCAATTAGAGATTTTGGAACATGTAAAGATCAATGTCGCACCAGAAACTCCGGTCTCAACTCTGAAAGGGATCATCCTCAACAGTGAAAATCAAGAGCTGTCATTCAGCAAGAAAGAATTGAGGAAAGCAGAAGAGCAAATGAAACAGGCTTTCAATGAGTTCTACCAAAAGCTTCGGCTTTTGAAAAGTTACTGTTTCTTGAACCAATTGGCTTTCTCAAAGATCATGAAGAAACATGACAAGATCACTTCAAGGAATGCATCAAAGGTTCACTTGAACATGATGGAAACCTCTTATCTCGGGACCTGTGATGATGTTACTAGGCTTATAGAAAGGGTGGAGGCTACCTTCATAAAACACTTTGCAAATGGAAATCACAGAAAAGGAATGAAGACATTAAGACCAACAGCCAGAAGGGAAAAGCATAGAAGTACATTTTTCTTGGGACTGTTCTCTGGGTGTTCAATTGCACTTGTAGTGGCCATTATAGTGCTTATACATGCAAGAGGTCTCCTTGAAAGTGAGGGGCGTAGCCTGTACATGGAAAACATATTTCCTCTTTACAGCTTGTTTGGATTCATAGTCCTTCATATGGTCGTCTTCTCAGCAAATATATATTACTGGAGGCGATACCGAGTAAATTTTTCATTTATCTTTGGCTTTAAGAAAGGCACAGAACTGGGGTACAGACAGTCTTTCCTCATGAGTTCCGGCCTTGCAGTTCTGGCATTGGCTGGTGTCCTCTCAAATTTGGATATGGAGATGGACCCAAGTACACAAAGCTTCAGAGCCTTGACAGAATTAGTCCCTTTGGGTCTAGTCATTGTTCTGGTTGGTATAATGTTATGTCCTTTCAACATAGTATATCGTTCCTCCCGATTTTTCCTCATCCAAGCTGTAGTACATTGCGTTTGTGCTCCTCTGTACAAGGTTACCCTCCAGGATTTTTTCTTGGCAGATCAGCTTACTAGCCAGGTTCAGGCCTTCAGGAGTTTGGAATTCTATATTTGCTATTATGGTTGGGGGGACTTCAAAAAGAGATCACACAACTGCCTAGACAGCCATGTATACAAAACTTTCTACTTCATTGTAGCAATTATCCCATATTGGATTCGTTCCCTTCAGTGTCTGCGACGCTTGGTGGAGGAGAAAGATGGAATGCAAGGGTTAAATGGTCTGAAATACTTCTCAACAATTGTCGCAGTTGCCATGAGAACAAGTTTTGATATGAAAAAAGGGATGACATGGAAGATCCTAGCTATGACTAGCTCATTTGTTGCAACAGTTGTCAGTACTTACTGGGATATTGTCATAGATTGGGGTCTTTTGAGACGGAATTCTGAAAACCGTTGGCTCAGAGACAAACTCCTTATACCAAACAAAAGTGTTTATTTCGTAGCCATGGTGTTAAATGTTCTACTGAGACTTGCTTGGATGCAGTCAGTATTAGGATTTCGAGAAGCACCATTCATCCATAGAACAGCCTTAGTTGCAATAGTTGCCTGTTTAGAAATAATTCGCCGTGGCATTTGGAACTTCTTCCGGTTGGAGAATGAGCACTTGAATAATGTTGGGAAGTATCGAGCATTCAAGTCTGTACCCCTACCTTTCAACTATTACCATGATGAAGGCAAGAGCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000228 GO:0000280 GO:0000287 GO:0001503 GO:0001649 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006163 GO:0006282 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007140 GO:0007276 GO:0008150 GO:0008152 GO:0008283 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009314 GO:0009628 GO:0009892 GO:0009987 GO:0010212 GO:0010520 GO:0010564 GO:0010569 GO:0010605 GO:0010639 GO:0010941 GO:0010948 GO:0016043 GO:0016787 GO:0017144 GO:0019219 GO:0019222 GO:0019637 GO:0019693 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0033687 GO:0034641 GO:0040020 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045128 GO:0045786 GO:0045835 GO:0045910 GO:0045934 GO:0046034 GO:0046483 GO:0046872 GO:0048232 GO:0048285 GO:0048471 GO:0048519 GO:0048523 GO:0048583 GO:0048609 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051321 GO:0051445 GO:0051447 GO:0051704 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0055086 GO:0060255 GO:0060548 GO:0060631 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0071840 GO:0072521 GO:0080090 GO:0080134 GO:0080135 GO:0104004 GO:0110029 GO:0140013 GO:1901135 GO:1901360 GO:1901564 GO:1903046 GO:2000241 GO:2000242 GO:2000779 GO:2001020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA Vps4_C

Protein Analysis

764

Amino Acids

88.21

Weight (kDa)

9.13

Isoelectric Point (pI)

40.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPX PF03105 1 - 311 7.4e-70 SPX domain
EXS PF03124 401 - 738 3.6e-99 EXS family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012812)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01900
fragaria_vesca FvH4_6g53330
malus_domestica MD09G1011400.v1.1 MD17G1011900.v1.1
prunus_persica Prupe.3G305600_v2.0.a1
pyrus_communis pycom111g00970 pycom17g00960
rosa_chinensis RchiOBHm_Chr2g0175491
rosa_laevigata RLG00000022332
rosa_multiflora Rmu_sc0003302.1_g000003 Rmu_sc0021955.1_g000002
rosa_roxburghii Rroxscaffold_2G00077290
rosa_rugosa Rorug02G0585100
rosa_samantha Rh2AG664700 Rh2BG675400 Rh2CG638600 Rh2DG689400
rosa_wichuraiana Rw2G054480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 276
AccB1I GGYRCC 2 cut(s) 34, 276
AccI GTMKAC 2 cut(s) 421, 1719
AclWI GGATC 2 cut(s) 728, 1897
AcoI YGGCCR 1 cut(s) 1131
AcsI RAATTY 6 cut(s) 17, 493, 1291, 1399, 1649, 1987
AcuI CTGAAG 4 cut(s) 276, 1420, 1621, 1757
AfiI CCNNNNNNNGG 6 cut(s) 192, 211, 515, 1192, 1243, 1630
AflIII ACRYGT 1 cut(s) 670
AjnI CCWGG 2 cut(s) 1590, 1623
Alw21I GWGCWC 2 cut(s) 1570, 2211
Alw26I GTCTC 7 cut(s) 301, 582, 709, 1166, 1975, 2004, 2068
AlwI GGATC 2 cut(s) 728, 1897
AlwNI CAGNNNCTG 1 cut(s) 1780
Ama87I CYCGRG 1 cut(s) 950
AoxI GGCC 3 cut(s) 1131, 1363, 1632
ApeKI GCWGC 1 cut(s) 535
ApoI RAATTY 6 cut(s) 17, 493, 1291, 1399, 1649, 1987
Asp700I GAANNNNTTC 4 cut(s) 243, 1835, 2166, 2189
Asp718I GGTACC 1 cut(s) 276
AspS9I GGNCC 3 cut(s) 488, 954, 1417
AvaI CYCGRG 1 cut(s) 950
AvaII GGWCC 3 cut(s) 488, 954, 1417
BalI TGGCCA 1 cut(s) 1133
BanI GGYRCC 2 cut(s) 34, 276
BbsI GAAGAC 3 cut(s) 585, 1049, 1243
Bbv12I GWGCWC 2 cut(s) 1570, 2211
BbvI GCAGC 1 cut(s) 547
BccI CCATC 8 cut(s) 254, 263, 421, 479, 562, 928, 1408, 1799
BceAI ACGGC 1 cut(s) 2157
BciT130I CCWGG 2 cut(s) 1592, 1625
BciVI GTATCC 1 cut(s) 424
BclI TGATCA 1 cut(s) 343
BcoDI GTCTC 7 cut(s) 301, 582, 709, 1166, 1975, 2004, 2068
BfaI CTAG 7 cut(s) 606, 972, 1469, 1620, 1706, 1907, 1917
BfmI CTRYAG 2 cut(s) 178, 1548
BfuI GTATCC 1 cut(s) 424
BglI GCCNNNNNGGC 1 cut(s) 43
BisI GCNGC 1 cut(s) 536
BlsI GCNGC 1 cut(s) 537
BmcAI AGTACT 1 cut(s) 1945
Bme1390I CCNGG 2 cut(s) 1592, 1625
Bme18I GGWCC 3 cut(s) 488, 954, 1417
BmeT110I CYCGRG 1 cut(s) 950
BmgT120I GGNCC 3 cut(s) 488, 954, 1417
BmiI GGNNCC 4 cut(s) 36, 278, 955, 1419
BmrFI CCNGG 2 cut(s) 1592, 1625
BmrI ACTGGG 2 cut(s) 1340, 1960
BmsI GCATC 3 cut(s) 179, 920, 2076
BmuI ACTGGG 2 cut(s) 1340, 1960
BpiI GAAGAC 3 cut(s) 585, 1049, 1243
BplI GAGNNNNNCTC 2 cut(s) 2001, 2033
BpmI CTGGAG 2 cut(s) 1294, 1574
BpuEI CTTGAG 2 cut(s) 59, 437
BsaI GGTCTC 3 cut(s) 301, 709, 1166
BsaJI CCNNGG 3 cut(s) 221, 2052, 2173
BsaWI WCCGGW 2 cut(s) 700, 2193
Bsc4I CCNNNNNNNGG 6 cut(s) 192, 211, 515, 1192, 1243, 1630
Bse118I RCCGGY 1 cut(s) 204
Bse1I ACTGG 3 cut(s) 1277, 1335, 1955
Bse3DI GCAATG 2 cut(s) 135, 1555
BseBI CCWGG 2 cut(s) 1592, 1625
BseDI CCNNGG 3 cut(s) 221, 2052, 2173
BseLI CCNNNNNNNGG 6 cut(s) 192, 211, 515, 1192, 1243, 1630
BseMI GCAATG 2 cut(s) 135, 1555
BseMII CTCAG 4 cut(s) 437, 1269, 2020, 2063
BseNI ACTGG 3 cut(s) 1277, 1335, 1955
BseRI GAGGAG 5 cut(s) 416, 600, 639, 1560, 1811
BseXI GCAGC 1 cut(s) 547
BshFI GGCC 3 cut(s) 1133, 1365, 1634
BshNI GGYRCC 2 cut(s) 34, 276
BsiHKAI GWGCWC 2 cut(s) 1570, 2211
BsiHKCI CYCGRG 1 cut(s) 950
BsiSI CCGG 5 cut(s) 38, 205, 701, 1362, 2194
BslFI GGGAC 6 cut(s) 10, 227, 967, 1110, 1442, 1691
BslI CCNNNNNNNGG 6 cut(s) 192, 211, 515, 1192, 1243, 1630
BsmAI GTCTC 7 cut(s) 301, 582, 709, 1166, 1975, 2004, 2068
BsmBI CGTCTC 1 cut(s) 1975
BsmFI GGGAC 6 cut(s) 10, 227, 967, 1110, 1442, 1691
BsmI GAATGC 3 cut(s) 913, 1815, 2237
BsnI GGCC 3 cut(s) 1133, 1365, 1634
Bso31I GGTCTC 3 cut(s) 301, 709, 1166
BsoBI CYCGRG 1 cut(s) 950
Bsp1286I GDGCHC 2 cut(s) 1570, 2211
Bsp1407I TGTACA 2 cut(s) 1188, 1575
Bsp143I GATC 8 cut(s) 343, 678, 720, 873, 894, 1609, 1691, 1902
Bsp19I CCATGG 1 cut(s) 2052
BspANI GGCC 3 cut(s) 1133, 1365, 1634
BspCNI CTCAG 4 cut(s) 438, 1268, 2019, 2064
BspHI TCATGA 3 cut(s) 346, 876, 1353
BspLI GGNNCC 4 cut(s) 36, 278, 955, 1419
BspPI GGATC 2 cut(s) 728, 1897
BspQI GCTCTTC 2 cut(s) 517, 777
BspT107I GGYRCC 2 cut(s) 34, 276
BspTNI GGTCTC 3 cut(s) 301, 709, 1166
BsrDI GCAATG 2 cut(s) 135, 1555
BsrFI RCCGGY 1 cut(s) 204
BsrGI TGTACA 2 cut(s) 1188, 1575
BsrI ACTGG 3 cut(s) 1277, 1335, 1955
BssAI RCCGGY 1 cut(s) 204
BssECI CCNNGG 3 cut(s) 221, 2052, 2173
BssMI GATC 8 cut(s) 343, 678, 720, 873, 894, 1609, 1691, 1902
BssNAI GTATAC 1 cut(s) 1720
BssT1I CCWWGG 1 cut(s) 2052
Bst1107I GTATAC 1 cut(s) 1720
Bst2UI CCWGG 2 cut(s) 1592, 1625
Bst4CI ACNGT 7 cut(s) 295, 734, 845, 1101, 1344, 1936, 2000
Bst6I CTCTTC 3 cut(s) 234, 517, 777
BstAPI GCANNNNNTGC 1 cut(s) 2150
BstAUI TGTACA 2 cut(s) 1188, 1575
BstC8I GCNNGC 1 cut(s) 206
BstDEI CTNAG 5 cut(s) 446, 1255, 2006, 2072, 2137
BstDSI CCRYGG 2 cut(s) 2052, 2173
BstEII GGTNACC 1 cut(s) 1582
BstKTI GATC 8 cut(s) 346, 681, 723, 876, 897, 1612, 1694, 1905
BstMAI GTCTC 7 cut(s) 301, 582, 709, 1166, 1975, 2004, 2068
BstMBI GATC 8 cut(s) 343, 678, 720, 873, 894, 1609, 1691, 1902
BstMWI GCNNNNNNNGC 5 cut(s) 43, 1376, 1710, 2141, 2150
BstNI CCWGG 2 cut(s) 1592, 1625
BstNSI RCATGY 2 cut(s) 674, 1154
BstPI GGTNACC 1 cut(s) 1582
BstSCI CCNGG 2 cut(s) 1590, 1623
BstSFI CTRYAG 2 cut(s) 178, 1548
BstV1I GCAGC 1 cut(s) 547
BstV2I GAAGAC 3 cut(s) 585, 1049, 1243
BstX2I RGATCY 1 cut(s) 1902
BstYI RGATCY 1 cut(s) 1902
BstZ17I GTATAC 1 cut(s) 1720
BsuI GTATCC 1 cut(s) 424
BsuRI GGCC 3 cut(s) 1133, 1365, 1634
BtgI CCRYGG 2 cut(s) 2052, 2173
BtsIMutI CAGTG 3 cut(s) 252, 739, 1781
Cac8I GCNNGC 1 cut(s) 206
CaiI CAGNNNCTG 1 cut(s) 1780
CciI TCATGA 3 cut(s) 346, 876, 1353
Cfr10I RCCGGY 1 cut(s) 204
Cfr13I GGNCC 3 cut(s) 488, 954, 1417
CseI GACGC 1 cut(s) 1794
DdeI CTNAG 5 cut(s) 446, 1255, 2006, 2072, 2137
DpnI GATC 8 cut(s) 345, 680, 722, 875, 896, 1611, 1693, 1904
DpnII GATC 8 cut(s) 343, 678, 720, 873, 894, 1609, 1691, 1902
DraI TTTAAA 1 cut(s) 643
EaeI YGGCCR 1 cut(s) 1131
Eam1104I CTCTTC 3 cut(s) 234, 517, 777
EarI CTCTTC 3 cut(s) 234, 517, 777
Eco130I CCWWGG 1 cut(s) 2052
Eco147I AGGCCT 1 cut(s) 1634
Eco31I GGTCTC 3 cut(s) 301, 709, 1166
Eco47I GGWCC 3 cut(s) 488, 954, 1417
Eco57I CTGAAG 4 cut(s) 276, 1420, 1621, 1757
Eco88I CYCGRG 1 cut(s) 950
Eco91I GGTNACC 1 cut(s) 1582
EcoO109I RGGNCCY 1 cut(s) 954
EcoO65I GGTNACC 1 cut(s) 1582
EcoRI GAATTC 2 cut(s) 1649, 1987
EcoRII CCWGG 2 cut(s) 1590, 1623
EcoT14I CCWWGG 1 cut(s) 2052
EcoT22I ATGCAT 1 cut(s) 913
ErhI CCWWGG 1 cut(s) 2052
Esp3I CGTCTC 1 cut(s) 1975
FalI AAGNNNNNCTT 6 cut(s) 68, 100, 231, 263, 908, 940
FaqI GGGAC 6 cut(s) 10, 227, 967, 1110, 1442, 1691
FauNDI CATATG 1 cut(s) 1242
FbaI TGATCA 1 cut(s) 343
FblI GTMKAC 2 cut(s) 421, 1719
Fnu4HI GCNGC 1 cut(s) 536
Fsp4HI GCNGC 1 cut(s) 536
FspBI CTAG 7 cut(s) 606, 972, 1469, 1620, 1706, 1907, 1917
GluI GCNGC 1 cut(s) 536
GsuI CTGGAG 2 cut(s) 1294, 1574
HaeIII GGCC 3 cut(s) 1133, 1365, 1634
HapII CCGG 5 cut(s) 38, 205, 701, 1362, 2194
HgaI GACGC 1 cut(s) 1794
HindIII AAGCTT 2 cut(s) 821, 1432
HinfI GANTC 4 cut(s) 215, 244, 1227, 1762
HpaII CCGG 5 cut(s) 38, 205, 701, 1362, 2194
Hpy166II GTNNAC 4 cut(s) 422, 922, 1427, 1720
Hpy188I TCNGA 8 cut(s) 222, 301, 447, 714, 1439, 1830, 1993, 2009
Hpy8I GTNNAC 4 cut(s) 422, 922, 1427, 1720
Hpy99I CGWCG 1 cut(s) 1788
HpyAV CCTTC 8 cut(s) 7, 610, 1009, 1059, 1247, 1645, 1781, 2273
HpyCH4III ACNGT 7 cut(s) 295, 734, 845, 1101, 1344, 1936, 2000
HpyCH4IV ACGT 1 cut(s) 284
HpyCH4V TGCA 9 cut(s) 911, 1016, 1121, 1154, 1370, 1813, 1931, 2089, 2144
HpyF10VI GCNNNNNNNGC 5 cut(s) 43, 1376, 1710, 2141, 2150
HpyF3I CTNAG 5 cut(s) 446, 1255, 2006, 2072, 2137
HpySE526I ACGT 1 cut(s) 284
KpnI GGTACC 1 cut(s) 280
KroI GCCGGC 1 cut(s) 204
KroNI GCCGGC 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 8 cut(s) 343, 678, 720, 873, 894, 1609, 1691, 1902
LguI GCTCTTC 2 cut(s) 517, 777
LmnI GCTCC 1 cut(s) 1573
Lsp1109I GCAGC 1 cut(s) 547
LweI GCATC 3 cut(s) 179, 920, 2076
MaeI CTAG 7 cut(s) 606, 972, 1469, 1620, 1706, 1907, 1917
MaeII ACGT 1 cut(s) 284
MaeIII GTNAC 5 cut(s) 250, 289, 839, 967, 1582
MalI GATC 8 cut(s) 345, 680, 722, 875, 896, 1611, 1693, 1904
MboI GATC 8 cut(s) 343, 678, 720, 873, 894, 1609, 1691, 1902
MfeI CAATTG 3 cut(s) 857, 1116, 1845
MflI RGATCY 1 cut(s) 1902
MhlI GDGCHC 2 cut(s) 1570, 2211
MlsI TGGCCA 1 cut(s) 1133
MluNI TGGCCA 1 cut(s) 1133
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 2178
Mox20I TGGCCA 1 cut(s) 1133
Mph1103I ATGCAT 1 cut(s) 913
MroNI GCCGGC 1 cut(s) 204
MroXI GAANNNNTTC 4 cut(s) 243, 1835, 2166, 2189
MscI TGGCCA 1 cut(s) 1133
MseI TTAA 7 cut(s) 324, 387, 642, 1049, 1314, 1820, 2060
MslI CAYNNNNRTG 3 cut(s) 543, 545, 1139
Msp20I TGGCCA 1 cut(s) 1133
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 5 cut(s) 38, 205, 701, 1362, 2194
MspR9I CCNGG 2 cut(s) 1592, 1625
MunI CAATTG 3 cut(s) 857, 1116, 1845
Mva1269I GAATGC 3 cut(s) 913, 1815, 2237
MvaI CCWGG 2 cut(s) 1592, 1625
MwoI GCNNNNNNNGC 5 cut(s) 43, 1376, 1710, 2141, 2150
NaeI GCCGGC 1 cut(s) 206
NcoI CCATGG 1 cut(s) 2052
NdeI CATATG 1 cut(s) 1242
NdeII GATC 8 cut(s) 343, 678, 720, 873, 894, 1609, 1691, 1902
NgoMIV GCCGGC 1 cut(s) 204
NlaIV GGNNCC 4 cut(s) 36, 278, 955, 1419
NmuCI GTSAC 2 cut(s) 250, 289
NsiI ATGCAT 1 cut(s) 913
NspI RCATGY 2 cut(s) 674, 1154
PagI TCATGA 3 cut(s) 346, 876, 1353
PceI AGGCCT 1 cut(s) 1634
PciI ACATGT 1 cut(s) 670
PciSI GCTCTTC 2 cut(s) 517, 777
PcsI WCGNNNNNNNCGW 1 cut(s) 1525
PctI GAATGC 3 cut(s) 913, 1815, 2237
PdiI GCCGGC 1 cut(s) 206
PdmI GAANNNNTTC 4 cut(s) 243, 1835, 2166, 2189
PfeI GAWTC 3 cut(s) 244, 1227, 1762
PfoI TCCNGGA 1 cut(s) 1590
PkrI GCNGC 1 cut(s) 537
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
PpuMI RGGWCCY 1 cut(s) 954
PscI ACATGT 1 cut(s) 670
Psp5II RGGWCCY 1 cut(s) 954
Psp6I CCWGG 2 cut(s) 1590, 1623
PspEI GGTNACC 1 cut(s) 1582
PspGI CCWGG 2 cut(s) 1590, 1623
PspN4I GGNNCC 4 cut(s) 36, 278, 955, 1419
PspPI GGNCC 3 cut(s) 488, 954, 1417
PspPPI RGGWCCY 1 cut(s) 954
PstNI CAGNNNCTG 1 cut(s) 1780
PsuI RGATCY 1 cut(s) 1902
PvuII CAGCTG 1 cut(s) 500
RseI CAYNNNNRTG 3 cut(s) 543, 545, 1139
SapI GCTCTTC 2 cut(s) 517, 777
SaqAI TTAA 7 cut(s) 324, 387, 642, 1049, 1314, 1820, 2060
SatI GCNGC 1 cut(s) 536
Sau3AI GATC 8 cut(s) 343, 678, 720, 873, 894, 1609, 1691, 1902
Sau96I GGNCC 3 cut(s) 488, 954, 1417
ScaI AGTACT 1 cut(s) 1945
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 2 cut(s) 1592, 1625
SduI GDGCHC 2 cut(s) 1570, 2211
SfaNI GCATC 3 cut(s) 179, 920, 2076
SfcI CTRYAG 2 cut(s) 178, 1548
SinI GGWCC 3 cut(s) 488, 954, 1417
SmiMI CAYNNNNRTG 3 cut(s) 543, 545, 1139
SmlI CTYRAG 2 cut(s) 74, 452
SmoI CTYRAG 2 cut(s) 74, 452
SseBI AGGCCT 1 cut(s) 1634
SspMI CTAG 7 cut(s) 606, 972, 1469, 1620, 1706, 1907, 1917
StuI AGGCCT 1 cut(s) 1634
StyD4I CCNGG 2 cut(s) 1590, 1623
StyI CCWWGG 1 cut(s) 2052
TaaI ACNGT 7 cut(s) 295, 734, 845, 1101, 1344, 1936, 2000
TaiI ACGT 1 cut(s) 287
TaqI TCGA 2 cut(s) 2107, 2233
TatI WGTACW 6 cut(s) 1082, 1188, 1424, 1552, 1575, 1943
TfiI GAWTC 3 cut(s) 244, 1227, 1762
Tru1I TTAA 7 cut(s) 324, 387, 642, 1049, 1314, 1820, 2060
Tru9I TTAA 7 cut(s) 324, 387, 642, 1049, 1314, 1820, 2060
TscAI CASTG 3 cut(s) 259, 739, 1781
TseFI GTSAC 2 cut(s) 250, 289
TseI GCWGC 1 cut(s) 535
Tsp45I GTSAC 2 cut(s) 250, 289
TspGWI ACGGA 1 cut(s) 1999
TspRI CASTG 3 cut(s) 259, 739, 1781
VpaK11BI GGWCC 3 cut(s) 488, 954, 1417
XapI RAATTY 6 cut(s) 17, 493, 1291, 1399, 1649, 1987
XceI RCATGY 2 cut(s) 674, 1154
XcmI CCANNNNNNNNNTGG 1 cut(s) 620
XmiI GTMKAC 2 cut(s) 421, 1719
XmnI GAANNNNTTC 4 cut(s) 243, 1835, 2166, 2189
XspI CTAG 7 cut(s) 606, 972, 1469, 1620, 1706, 1907, 1917
ZrmI AGTACT 1 cut(s) 1945
Zsp2I ATGCAT 1 cut(s) 913
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.