Rh2AG664700

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0012812
Physical Location & Seq
Reverse (-)
87985617 .. 87986267
651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG664700.1

Sequence Viewer

Length: 651 bp
ATGGCGGGACATGAAGACGAGGTGACAAGGGACATGGTAATAAGCTTTATAATGGCGGGGAGGGACACAACTTCAGCAGCCATGACGTGGCTCTTCTGGTTGATTTCCCGCCATCAAACTGTAGAGGAAGATTTGGTGAAAGAGATTGAAGACAATCAAAGAACGATGGATTTCGAGTCATTGGATTTCAGATTACTAAAGGCATGCCTTTTCGAATCCATGAGGCTCTTTCCACCTGTGGCTTGGGACTCAAAACATGCCAAAGTTCATGACTTACTGCCGGATGGCACTCATGTCCGGGCCGGAGATAGAGTGACCTATTTTCCCTACGGAATGGGAAGAATGGAGTCGCTGTGGGGGAAGGACCGGCTGGAATTCAAGCCAGACCGGTGGTTTCTCGAACCGGACAAGGAGACGAGATCAGAGCTGAAAAAGGTATGCCCATACAAGTTGCCGATTTTTCAAGCAGGTCCAAGGGTTTGTCTTGGGAAGGAAATGGCTTTTACTCAGATGAAATATGTGATGGCTTCCATTCTCAGACGGTTCGAAATCAGACCGGTCTACTCCGACCAGCCGGTTTTCGTGCCACGCCTGACGGCCCACATGGCCGGCGGGTTGAAGGTTCTGGTCCGCAAGAGAGGGACTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

216

Amino Acids

25.18

Weight (kDa)

8.73

Isoelectric Point (pI)

40.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 6 - 192 2.2e-33 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012812)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01900
fragaria_vesca FvH4_6g53330
malus_domestica MD09G1011400.v1.1 MD17G1011900.v1.1
prunus_persica Prupe.3G305600_v2.0.a1
pyrus_communis pycom111g00970 pycom17g00960
rosa_chinensis RchiOBHm_Chr2g0175491
rosa_laevigata RLG00000022332
rosa_multiflora Rmu_sc0003302.1_g000003 Rmu_sc0021955.1_g000002
rosa_roxburghii Rroxscaffold_2G00077290
rosa_rugosa Rorug02G0585100
rosa_samantha Rh2AG664700 Rh2BG675400 Rh2CG638600 Rh2DG689400
rosa_wichuraiana Rw2G054480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 50
Acc36I ACCTGC 1 cut(s) 458
AccB7I CCANNNNNTGG 1 cut(s) 87
AccI GTMKAC 1 cut(s) 561
AciI CCGC 5 cut(s) 5, 56, 109, 612, 631
AcoI YGGCCR 1 cut(s) 606
AcsI RAATTY 1 cut(s) 374
AcuI CTGAAG 1 cut(s) 57
AfiI CCNNNNNNNGG 1 cut(s) 87
AgeI ACCGGT 2 cut(s) 387, 556
AgsI TTSAA 4 cut(s) 149, 379, 464, 619
AjiI CACGTC 1 cut(s) 87
AluBI AGCT 2 cut(s) 45, 427
AluI AGCT 2 cut(s) 45, 427
Alw26I GTCTC 1 cut(s) 407
AoxI GGCC 3 cut(s) 300, 597, 606
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 374
AsiGI ACCGGT 2 cut(s) 387, 556
AspS9I GGNCC 5 cut(s) 300, 364, 470, 598, 628
AsuC2I CCSGG 1 cut(s) 299
AsuHPI GGTGA 2 cut(s) 34, 148
AsuII TTCGAA 2 cut(s) 213, 546
AvaII GGWCC 3 cut(s) 364, 470, 628
BbsI GAAGAC 2 cut(s) 21, 156
BbvI GCAGC 1 cut(s) 89
BccI CCATC 4 cut(s) 120, 160, 278, 517
BceAI ACGGC 1 cut(s) 612
BcnI CCSGG 1 cut(s) 299
BcoDI GTCTC 1 cut(s) 407
BfmI CTRYAG 1 cut(s) 120
BfuAI ACCTGC 1 cut(s) 458
BglI GCCNNNNNGGC 1 cut(s) 605
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme1390I CCNGG 1 cut(s) 299
Bme18I GGWCC 3 cut(s) 364, 470, 628
BmgBI CACGTC 1 cut(s) 87
BmgT120I GGNCC 5 cut(s) 300, 364, 470, 598, 628
BmrFI CCNGG 1 cut(s) 299
BpiI GAAGAC 2 cut(s) 21, 156
Bpu14I TTCGAA 2 cut(s) 213, 546
BpuMI CCSGG 1 cut(s) 299
BsaJI CCNNGG 1 cut(s) 473
BsaWI WCCGGW 3 cut(s) 387, 403, 556
BsaXI ACNNNNNCTCC 4 cut(s) 297, 327, 338, 368
Bsc4I CCNNNNNNNGG 1 cut(s) 87
Bse118I RCCGGY 5 cut(s) 366, 387, 556, 574, 608
BseDI CCNNGG 1 cut(s) 473
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 1 cut(s) 87
BseMII CTCAG 2 cut(s) 521, 550
BseXI GCAGC 1 cut(s) 89
BshFI GGCC 3 cut(s) 302, 599, 608
BshTI ACCGGT 2 cut(s) 387, 556
BsiSI CCGG 9 cut(s) 281, 298, 303, 367, 388, 404, 557, 575, 609
BslFI GGGAC 4 cut(s) 21, 44, 77, 260
BslI CCNNNNNNNGG 1 cut(s) 87
BsmAI GTCTC 1 cut(s) 407
BsmBI CGTCTC 1 cut(s) 407
BsmFI GGGAC 4 cut(s) 21, 44, 77, 260
BsnI GGCC 3 cut(s) 302, 599, 608
Bsp119I TTCGAA 2 cut(s) 213, 546
Bsp143I GATC 1 cut(s) 419
BspACI CCGC 5 cut(s) 5, 56, 109, 612, 631
BspANI GGCC 3 cut(s) 302, 599, 608
BspCNI CTCAG 2 cut(s) 520, 549
BspHI TCATGA 1 cut(s) 268
BspMI ACCTGC 1 cut(s) 458
BspQI GCTCTTC 1 cut(s) 98
BspT104I TTCGAA 2 cut(s) 213, 546
BsrFI RCCGGY 5 cut(s) 366, 387, 556, 574, 608
BssAI RCCGGY 5 cut(s) 366, 387, 556, 574, 608
BssECI CCNNGG 1 cut(s) 473
BssMI GATC 1 cut(s) 419
BssT1I CCWWGG 1 cut(s) 473
Bst4CI ACNGT 2 cut(s) 121, 543
Bst6I CTCTTC 1 cut(s) 98
BstBI TTCGAA 2 cut(s) 213, 546
BstC8I GCNNGC 2 cut(s) 205, 610
BstDEI CTNAG 2 cut(s) 507, 536
BstF5I GGATG 1 cut(s) 289
BstKTI GATC 1 cut(s) 422
BstMAI GTCTC 1 cut(s) 407
BstMBI GATC 1 cut(s) 419
BstMWI GCNNNNNNNGC 1 cut(s) 605
BstNSI RCATGY 2 cut(s) 207, 260
BstSCI CCNGG 1 cut(s) 297
BstSFI CTRYAG 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 89
BstV2I GAAGAC 2 cut(s) 21, 156
BstXI CCANNNNNNTGG 1 cut(s) 390
BsuRI GGCC 3 cut(s) 302, 599, 608
BtrI CACGTC 1 cut(s) 87
BtsCI GGATG 1 cut(s) 289
BveI ACCTGC 1 cut(s) 458
Cac8I GCNNGC 2 cut(s) 205, 610
CciI TCATGA 1 cut(s) 268
Cfr10I RCCGGY 5 cut(s) 366, 387, 556, 574, 608
Cfr13I GGNCC 5 cut(s) 300, 364, 470, 598, 628
CspAI ACCGGT 2 cut(s) 387, 556
CviAII CATG 9 cut(s) 11, 34, 82, 204, 220, 257, 269, 293, 604
DdeI CTNAG 2 cut(s) 507, 536
DpnI GATC 1 cut(s) 421
DpnII GATC 1 cut(s) 419
EaeI YGGCCR 1 cut(s) 606
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Eco130I CCWWGG 1 cut(s) 473
Eco47I GGWCC 3 cut(s) 364, 470, 628
Eco57I CTGAAG 1 cut(s) 57
EcoRI GAATTC 1 cut(s) 374
EcoT14I CCWWGG 1 cut(s) 473
ErhI CCWWGG 1 cut(s) 473
Esp3I CGTCTC 1 cut(s) 407
FaeI CATG 9 cut(s) 14, 37, 85, 207, 223, 260, 272, 296, 607
FaqI GGGAC 4 cut(s) 21, 44, 77, 260
FatI CATG 9 cut(s) 10, 33, 81, 203, 219, 256, 268, 292, 603
FauI CCCGC 3 cut(s) 49, 116, 605
FblI GTMKAC 1 cut(s) 561
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 1 cut(s) 78
GluI GCNGC 1 cut(s) 78
HaeIII GGCC 3 cut(s) 302, 599, 608
HapII CCGG 9 cut(s) 281, 298, 303, 367, 388, 404, 557, 575, 609
Hin1II CATG 9 cut(s) 14, 37, 85, 207, 223, 260, 272, 296, 607
HindIII AAGCTT 1 cut(s) 43
HinfI GANTC 4 cut(s) 176, 215, 248, 347
HpaII CCGG 9 cut(s) 281, 298, 303, 367, 388, 404, 557, 575, 609
HphI GGTGA 2 cut(s) 34, 148
Hpy166II GTNNAC 1 cut(s) 562
Hpy188I TCNGA 6 cut(s) 191, 424, 510, 539, 554, 568
Hpy188III TCNNGA 2 cut(s) 269, 398
Hpy8I GTNNAC 1 cut(s) 562
HpyAV CCTTC 3 cut(s) 355, 484, 613
HpyCH4III ACNGT 2 cut(s) 121, 543
HpyCH4IV ACGT 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 605
HpyF3I CTNAG 2 cut(s) 507, 536
HpySE526I ACGT 1 cut(s) 86
Hsp92II CATG 9 cut(s) 14, 37, 85, 207, 223, 260, 272, 296, 607
KroI GCCGGC 1 cut(s) 608
KroNI GCCGGC 1 cut(s) 610
Kzo9I GATC 1 cut(s) 419
LguI GCTCTTC 1 cut(s) 98
Lsp1109I GCAGC 1 cut(s) 89
MaeII ACGT 1 cut(s) 86
MaeIII GTNAC 2 cut(s) 22, 313
MalI GATC 1 cut(s) 421
MboI GATC 1 cut(s) 419
MboII GAAGA 5 cut(s) 26, 85, 140, 161, 351
MluCI AATT 1 cut(s) 374
MlyI GAGTC 3 cut(s) 185, 242, 356
MmeI TCCRAC 1 cut(s) 591
MnlI CCTC 5 cut(s) 13, 54, 118, 216, 632
MroNI GCCGGC 1 cut(s) 608
MspI CCGG 9 cut(s) 281, 298, 303, 367, 388, 404, 557, 575, 609
MspR9I CCNGG 1 cut(s) 299
MwoI GCNNNNNNNGC 1 cut(s) 605
NaeI GCCGGC 1 cut(s) 610
NciI CCSGG 1 cut(s) 299
NdeII GATC 1 cut(s) 419
NgoMIV GCCGGC 1 cut(s) 608
NlaIII CATG 9 cut(s) 14, 37, 85, 207, 223, 260, 272, 296, 607
NmuCI GTSAC 2 cut(s) 22, 313
NspI RCATGY 2 cut(s) 207, 260
NspV TTCGAA 2 cut(s) 213, 546
PaeI GCATGC 1 cut(s) 207
PagI TCATGA 1 cut(s) 268
PciSI GCTCTTC 1 cut(s) 98
PdiI GCCGGC 1 cut(s) 610
PfeI GAWTC 1 cut(s) 215
PflMI CCANNNNNTGG 1 cut(s) 87
PinAI ACCGGT 2 cut(s) 387, 556
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 3 cut(s) 184, 242, 355
PpsI GAGTC 3 cut(s) 184, 242, 355
PsiI TTATAA 1 cut(s) 50
PspPI GGNCC 5 cut(s) 300, 364, 470, 598, 628
SapI GCTCTTC 1 cut(s) 98
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 1 cut(s) 419
Sau96I GGNCC 5 cut(s) 300, 364, 470, 598, 628
SchI GAGTC 3 cut(s) 185, 242, 356
ScrFI CCNGG 1 cut(s) 299
SetI ASST 9 cut(s) 24, 47, 89, 238, 320, 429, 438, 472, 624
SfcI CTRYAG 1 cut(s) 120
SfiI GGCCNNNNNGGCC 1 cut(s) 605
SfuI TTCGAA 2 cut(s) 213, 546
SinI GGWCC 3 cut(s) 364, 470, 628
SphI GCATGC 1 cut(s) 207
Sse9I AATT 1 cut(s) 374
SsiI CCGC 5 cut(s) 5, 56, 109, 612, 631
StyD4I CCNGG 1 cut(s) 297
StyI CCWWGG 1 cut(s) 473
TaaI ACNGT 2 cut(s) 121, 543
TaiI ACGT 1 cut(s) 89
TaqI TCGA 4 cut(s) 174, 213, 399, 546
TasI AATT 1 cut(s) 374
TfiI GAWTC 1 cut(s) 215
TseFI GTSAC 2 cut(s) 22, 313
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 2 cut(s) 22, 313
TspDTI ATGAA 3 cut(s) 27, 257, 527
TspGWI ACGGA 1 cut(s) 345
Van91I CCANNNNNTGG 1 cut(s) 87
VpaK11BI GGWCC 3 cut(s) 364, 470, 628
XapI RAATTY 1 cut(s) 374
XceI RCATGY 2 cut(s) 207, 260
XcmI CCANNNNNNNNNTGG 1 cut(s) 240
XmiI GTMKAC 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.