Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014965

Physical Location & Seq

Genomic Coordinates Forward (+)

72099022 .. 72100264

Gene Structure 1243 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0602200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGGAGAGTACTTGACTAAGAGAATTAGAGAGAAGATGCTTTCAAAGATACTTACATTTGAAGCTGGGTGGTTTGATCAGGATGAGAATTCCAGTGGTGCCATATGCTCTAGACTCGCCAAAGATGCCAATGTGGTGAGATCTTTAGTGGGTGATAGGCTTTCTCTACTTGTACAAACCTTCTCAGCTGTGACCGTAGCAGGCACAATGGGTTTGGTCATTGCATGGAGGCTGGCCTCAGTTATGATAGCACTGCAACCCATCACTATTCTGTGCTACTACACCAGGAGTATCCTTCTCCAAAGCATGTCAAGCAAAGCCACCAAAGCTCAAGATGAAAGTAGCAAGCTAGCTGCAGAGGCAGTCTCCAACCTCAGAACCATCACTGCTTTCTCGTCTCAAGACCGCCTGTTGAAAATGCTCGAAAAGGCCCAAGAAGGCCCGCGTAAGGAGAGCATTCGACAATCATGGTTTGCGTGCATTGCTCTTGGTTGTTCTCAAGGTCTTAACACTATCACCTGGGCTTTTGACTTTTGGTACGGAGGCAAGCTCGTCGCCAAGGGCTACATAACTGCGAAAGCACTGTTTCGGACGTACATGATATTGCTGAGCACGGCTCGGGTCATTGCGGAAGCGGGAAGTATGACTTCGGACCTTGTGAAAGGCTCGGACGCTGTTGCGTCCGTATTTGCCGTGTTGGACCGGTACACAAATATAGAACCGGAAGACCCGGAAGGTTGCAAACCCAAAAGTATAACGGGTCATATAGAACTTCATGACATACATTTTGCGTACCCCACTAGGCCCGATGTGATGATCTTTAAGGAATTCTCAATAAATATCGAAGCGAGAAAATCAACAGCTTTAGTAGGAAATAGTGGGTCCGGAAAATCAACAATCATCGGATTAATTGAAAGATTTTACAATCCACTTAAAGAAGAAGTGAGAATCGACGGTCGAAATATAAAGTCGTACCACCTCAGGATGTTAAGGAAACACATAGCCTTGGTTAGCCAAGAACCAACATTATTTTCGGGCAGCATACACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0007098 GO:0008092 GO:0008150 GO:0008275 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0031023 GO:0031109 GO:0031122 GO:0031974 GO:0031981 GO:0032153 GO:0032155 GO:0032991 GO:0034622 GO:0043015 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0046785 GO:0048285 GO:0051225 GO:0051258 GO:0051298 GO:0051321 GO:0051415 GO:0051418 GO:0065003 GO:0070013 GO:0070925 GO:0071840 GO:0090307 GO:0097435 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

350

Amino Acids

38.86

Weight (kDa)

9.23

Isoelectric Point (pI)

48.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	1 - 205	1.6e-39	ABC transporter transmembrane region
ABC_tran	PF00005	275 - 346	8.1e-14	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17410 AT5G17410
fragaria_vesca	FvH4_6g00120
malus_domestica	MD14G1089300.v1.1
prunus_persica	Prupe.7G036600_v2.0.a1 Prupe.7G036600_v2.0.a1
pyrus_communis	pycom14g07880
rosa_chinensis	RchiOBHm_Chr3g0447481
rosa_laevigata	RLG00000025994
rosa_roxburghii	Rroxscaffold_6G00425700
rosa_rugosa	Rorug02G0602200
rosa_samantha	Rh3AG002400 Rh3BG001900 Rh3CG002200 Rh3DG002300
rosa_wichuraiana	Rw3G000130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	98
AccII	CGCG	1 cut(s)	445
AccIII	TCCGGA	1 cut(s)	884
AciI	CCGC	4 cut(s)	406, 443, 629, 635
AcsI	RAATTY	2 cut(s)	88, 827
AfaI	GTAC	7 cut(s)	11, 174, 539, 596, 707, 794, 974
AfiI	CCNNNNNNNGG	1 cut(s)	448
AgeI	ACCGGT	1 cut(s)	702
AgsI	TTSAA	4 cut(s)	45, 62, 415, 914
AjnI	CCWGG	2 cut(s)	284, 518
AjuI	GAANNNNNNNTTGG	2 cut(s)	1015, 1047
AluBI	AGCT	7 cut(s)	65, 188, 329, 349, 353, 550, 863
AluI	AGCT	7 cut(s)	65, 188, 329, 349, 353, 550, 863
Alw21I	GWGCWC	1 cut(s)	614
Alw26I	GTCTC	2 cut(s)	370, 402
Ama87I	CYCGRG	1 cut(s)	618
Aor13HI	TCCGGA	1 cut(s)	884
AoxI	GGCC	4 cut(s)	234, 429, 439, 803
ApeKI	GCWGC	2 cut(s)	353, 1038
ApoI	RAATTY	2 cut(s)	88, 827
ArsI	GACNNNNNNTTYG	2 cut(s)	770, 802
AseI	ATTAAT	1 cut(s)	908
AsiGI	ACCGGT	1 cut(s)	702
AspS9I	GGNCC	6 cut(s)	430, 440, 652, 700, 804, 882
AsuC2I	CCSGG	1 cut(s)	731
AsuHPI	GGTGA	3 cut(s)	148, 164, 508
AsuNHI	GCTAGC	1 cut(s)	349
AvaI	CYCGRG	1 cut(s)	618
AvaII	GGWCC	3 cut(s)	652, 700, 882
AxyI	CCTNAGG	1 cut(s)	980
BanI	GGYRCC	1 cut(s)	98
BbsI	GAAGAC	1 cut(s)	732
Bbv12I	GWGCWC	1 cut(s)	614
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	2 cut(s)	269, 389
BceAI	ACGGC	2 cut(s)	630, 677
BcgI	CGANNNNNNTGC	2 cut(s)	535, 569
BciT130I	CCWGG	2 cut(s)	286, 520
BciVI	GTATCC	1 cut(s)	302
BclI	TGATCA	1 cut(s)	76
BcnI	CCSGG	1 cut(s)	731
BcoDI	GTCTC	2 cut(s)	370, 402
BfaI	CTAG	4 cut(s)	111, 350, 801, 1051
BfmI	CTRYAG	1 cut(s)	354
BfuI	GTATCC	1 cut(s)	302
BglII	AGATCT	1 cut(s)	140
BisI	GCNGC	2 cut(s)	354, 1039
BlpI	GCTNAGC	1 cut(s)	608
BlsI	GCNGC	2 cut(s)	355, 1040
BmcAI	AGTACT	1 cut(s)	11
Bme1390I	CCNGG	3 cut(s)	286, 520, 731
Bme18I	GGWCC	3 cut(s)	652, 700, 882
BmeT110I	CYCGRG	1 cut(s)	618
BmgT120I	GGNCC	6 cut(s)	430, 440, 652, 700, 804, 882
BmiI	GGNNCC	2 cut(s)	100, 883
BmrFI	CCNGG	3 cut(s)	286, 520, 731
BmsI	GCATC	2 cut(s)	27, 115
BmtI	GCTAGC	1 cut(s)	353
BpiI	GAAGAC	1 cut(s)	732
BplI	GAGNNNNNCTC	6 cut(s)	350, 382, 534, 566, 601, 633
Bpu1102I	GCTNAGC	1 cut(s)	608
BpuEI	CTTGAG	3 cut(s)	315, 384, 483
BpuMI	CCSGG	1 cut(s)	731
BsaJI	CCNNGG	3 cut(s)	519, 558, 1005
BsaWI	WCCGGW	3 cut(s)	702, 721, 884
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
Bse118I	RCCGGY	1 cut(s)	702
Bse1I	ACTGG	1 cut(s)	93
Bse21I	CCTNAGG	1 cut(s)	980
Bse3DI	GCAATG	3 cut(s)	219, 480, 624
BseAI	TCCGGA	1 cut(s)	884
BseBI	CCWGG	2 cut(s)	286, 520
BseDI	CCNNGG	3 cut(s)	519, 558, 1005
BseGI	GGATG	2 cut(s)	88, 990
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseMI	GCAATG	3 cut(s)	219, 480, 624
BseMII	CTCAG	5 cut(s)	198, 252, 388, 599, 994
BseNI	ACTGG	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	340
BseYI	CCCAGC	1 cut(s)	65
Bsh1236I	CGCG	1 cut(s)	445
Bsh1285I	CGRYCG	1 cut(s)	958
BshFI	GGCC	4 cut(s)	236, 431, 441, 805
BshNI	GGYRCC	1 cut(s)	98
BshTI	ACCGGT	1 cut(s)	702
BsiEI	CGRYCG	1 cut(s)	958
BsiHKAI	GWGCWC	1 cut(s)	614
BsiHKCI	CYCGRG	1 cut(s)	618
BsiSI	CCGG	4 cut(s)	703, 722, 731, 885
BslI	CCNNNNNNNGG	1 cut(s)	448
BsmAI	GTCTC	2 cut(s)	370, 402
BsmBI	CGTCTC	1 cut(s)	402
BsmI	GAATGC	1 cut(s)	456
BsnI	GGCC	4 cut(s)	236, 431, 441, 805
BsoBI	CYCGRG	1 cut(s)	618
Bsp1286I	GDGCHC	1 cut(s)	614
Bsp13I	TCCGGA	1 cut(s)	884
Bsp1407I	TGTACA	1 cut(s)	172
Bsp143I	GATC	3 cut(s)	76, 140, 816
Bsp1720I	GCTNAGC	1 cut(s)	608
BspACI	CCGC	4 cut(s)	406, 443, 629, 635
BspANI	GGCC	4 cut(s)	236, 431, 441, 805
BspCNI	CTCAG	5 cut(s)	197, 251, 387, 600, 993
BspEI	TCCGGA	1 cut(s)	884
BspFNI	CGCG	1 cut(s)	445
BspHI	TCATGA	1 cut(s)	775
BspLI	GGNNCC	2 cut(s)	100, 883
BspMAI	CTGCAG	1 cut(s)	358
BspOI	GCTAGC	1 cut(s)	353
BspT107I	GGYRCC	1 cut(s)	98
BsrDI	GCAATG	3 cut(s)	219, 480, 624
BsrFI	RCCGGY	1 cut(s)	702
BsrGI	TGTACA	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	93
BssAI	RCCGGY	1 cut(s)	702
BssECI	CCNNGG	3 cut(s)	519, 558, 1005
BssMI	GATC	3 cut(s)	76, 140, 816
BssT1I	CCWWGG	2 cut(s)	558, 1005
Bst2UI	CCWGG	2 cut(s)	286, 520
Bst4CI	ACNGT	3 cut(s)	196, 585, 956
BstAUI	TGTACA	1 cut(s)	172
BstC8I	GCNNGC	7 cut(s)	202, 234, 347, 351, 443, 478, 548
BstDEI	CTNAG	6 cut(s)	18, 184, 238, 374, 608, 980
BstF5I	GGATG	2 cut(s)	88, 990
BstFNI	CGCG	1 cut(s)	445
BstKTI	GATC	3 cut(s)	79, 143, 819
BstMAI	GTCTC	2 cut(s)	370, 402
BstMBI	GATC	3 cut(s)	76, 140, 816
BstMCI	CGRYCG	1 cut(s)	958
BstMWI	GCNNNNNNNGC	5 cut(s)	125, 312, 326, 359, 482
BstNI	CCWGG	2 cut(s)	286, 520
BstNSI	RCATGY	1 cut(s)	310
BstSCI	CCNGG	3 cut(s)	284, 518, 729
BstSFI	CTRYAG	1 cut(s)	354
BstUI	CGCG	1 cut(s)	445
BstV1I	GCAGC	1 cut(s)	340
BstV2I	GAAGAC	1 cut(s)	732
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
Bsu36I	CCTNAGG	1 cut(s)	980
BsuI	GTATCC	1 cut(s)	302
BsuRI	GGCC	4 cut(s)	236, 431, 441, 805
BtsCI	GGATG	2 cut(s)	88, 990
BtsI	GCAGTG	2 cut(s)	251, 384
BtsIMutI	CAGTG	4 cut(s)	100, 251, 384, 581
Cac8I	GCNNGC	7 cut(s)	202, 234, 347, 351, 443, 478, 548
CciI	TCATGA	1 cut(s)	775
Cfr10I	RCCGGY	1 cut(s)	702
Cfr13I	GGNCC	6 cut(s)	430, 440, 652, 700, 804, 882
CseI	GACGC	2 cut(s)	669, 680
Csp6I	GTAC	7 cut(s)	10, 173, 538, 595, 706, 793, 973
CspAI	ACCGGT	1 cut(s)	702
CviAII	CATG	5 cut(s)	225, 307, 468, 598, 776
CviQI	GTAC	7 cut(s)	10, 173, 538, 595, 706, 793, 973
DdeI	CTNAG	6 cut(s)	18, 184, 238, 374, 608, 980
DpnI	GATC	3 cut(s)	78, 142, 818
DpnII	GATC	3 cut(s)	76, 140, 816
Eco130I	CCWWGG	2 cut(s)	558, 1005
Eco47I	GGWCC	3 cut(s)	652, 700, 882
Eco81I	CCTNAGG	1 cut(s)	980
Eco88I	CYCGRG	1 cut(s)	618
EcoRI	GAATTC	2 cut(s)	88, 827
EcoRII	CCWGG	2 cut(s)	284, 518
EcoT14I	CCWWGG	2 cut(s)	558, 1005
ErhI	CCWWGG	2 cut(s)	558, 1005
Esp3I	CGTCTC	1 cut(s)	402
FaeI	CATG	5 cut(s)	228, 310, 471, 601, 779
FalI	AAGNNNNNCTT	2 cut(s)	631, 663
FatI	CATG	5 cut(s)	224, 306, 467, 597, 775
FauI	CCCGC	2 cut(s)	450, 628
FauNDI	CATATG	1 cut(s)	104
FbaI	TGATCA	1 cut(s)	76
Fnu4HI	GCNGC	2 cut(s)	354, 1039
FokI	GGATG	2 cut(s)	95, 997
Fsp4HI	GCNGC	2 cut(s)	354, 1039
FspBI	CTAG	4 cut(s)	111, 350, 801, 1051
GluI	GCNGC	2 cut(s)	354, 1039
GsaI	CCCAGC	1 cut(s)	69
HaeIII	GGCC	4 cut(s)	236, 431, 441, 805
HapII	CCGG	4 cut(s)	703, 722, 731, 885
HgaI	GACGC	2 cut(s)	669, 680
Hin1II	CATG	5 cut(s)	228, 310, 471, 601, 779
HinfI	GANTC	2 cut(s)	114, 948
HpaII	CCGG	4 cut(s)	703, 722, 731, 885
HphI	GGTGA	3 cut(s)	148, 164, 508
Hpy166II	GTNNAC	1 cut(s)	708
Hpy188I	TCNGA	5 cut(s)	377, 591, 652, 670, 905
Hpy188III	TCNNGA	7 cut(s)	80, 111, 332, 401, 776, 885, 982
Hpy8I	GTNNAC	1 cut(s)	708
Hpy99I	CGWCG	2 cut(s)	557, 956
HpyAV	CCTTC	4 cut(s)	190, 305, 431, 728
HpyCH4III	ACNGT	3 cut(s)	196, 585, 956
HpyCH4IV	ACGT	1 cut(s)	593
HpyCH4V	TGCA	5 cut(s)	224, 256, 356, 480, 741
HpyF10VI	GCNNNNNNNGC	5 cut(s)	125, 312, 326, 359, 482
HpyF3I	CTNAG	6 cut(s)	18, 184, 238, 374, 608, 980
HpySE526I	ACGT	1 cut(s)	593
Hsp92II	CATG	5 cut(s)	228, 310, 471, 601, 779
Kpn2I	TCCGGA	1 cut(s)	884
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	3 cut(s)	76, 140, 816
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	2 cut(s)	27, 115
MaeI	CTAG	4 cut(s)	111, 350, 801, 1051
MaeII	ACGT	1 cut(s)	593
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	3 cut(s)	78, 142, 818
MboI	GATC	3 cut(s)	76, 140, 816
MboII	GAAGA	3 cut(s)	46, 737, 950
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	1 cut(s)	614
MluCI	AATT	4 cut(s)	24, 88, 827, 909
MlyI	GAGTC	1 cut(s)	108
MmeI	TCCRAC	2 cut(s)	393, 678
MnlI	CCTC	6 cut(s)	222, 247, 352, 383, 536, 989
MroI	TCCGGA	1 cut(s)	884
MseI	TTAA	5 cut(s)	507, 822, 908, 933, 989
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	4 cut(s)	703, 722, 731, 885
MspR9I	CCNGG	3 cut(s)	286, 520, 731
Mva1269I	GAATGC	1 cut(s)	456
MvaI	CCWGG	2 cut(s)	286, 520
MvnI	CGCG	1 cut(s)	445
MwoI	GCNNNNNNNGC	5 cut(s)	125, 312, 326, 359, 482
NciI	CCSGG	1 cut(s)	731
NdeI	CATATG	1 cut(s)	104
NdeII	GATC	3 cut(s)	76, 140, 816
NheI	GCTAGC	1 cut(s)	349
NlaIII	CATG	5 cut(s)	228, 310, 471, 601, 779
NlaIV	GGNNCC	2 cut(s)	100, 883
NmuCI	GTSAC	1 cut(s)	190
NspI	RCATGY	1 cut(s)	310
PagI	TCATGA	1 cut(s)	775
PctI	GAATGC	1 cut(s)	456
PfeI	GAWTC	1 cut(s)	948
PinAI	ACCGGT	1 cut(s)	702
PkrI	GCNGC	2 cut(s)	355, 1040
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
PshBI	ATTAAT	1 cut(s)	908
Psp6I	CCWGG	2 cut(s)	284, 518
PspFI	CCCAGC	1 cut(s)	65
PspGI	CCWGG	2 cut(s)	284, 518
PspN4I	GGNNCC	2 cut(s)	100, 883
PspPI	GGNCC	6 cut(s)	430, 440, 652, 700, 804, 882
PstI	CTGCAG	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	140
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	7 cut(s)	11, 174, 539, 596, 707, 794, 974
RsaNI	GTAC	7 cut(s)	10, 173, 538, 595, 706, 793, 973
SaqAI	TTAA	5 cut(s)	507, 822, 908, 933, 989
SatI	GCNGC	2 cut(s)	354, 1039
Sau3AI	GATC	3 cut(s)	76, 140, 816
Sau96I	GGNCC	6 cut(s)	430, 440, 652, 700, 804, 882
ScaI	AGTACT	1 cut(s)	11
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	3 cut(s)	286, 520, 731
SduI	GDGCHC	1 cut(s)	614
SfaNI	GCATC	2 cut(s)	27, 115
SfcI	CTRYAG	1 cut(s)	354
SinI	GGWCC	3 cut(s)	652, 700, 882
SmlI	CTYRAG	3 cut(s)	330, 399, 498
SmoI	CTYRAG	3 cut(s)	330, 399, 498
Sse9I	AATT	4 cut(s)	24, 88, 827, 909
SsiI	CCGC	4 cut(s)	406, 443, 629, 635
SspMI	CTAG	4 cut(s)	111, 350, 801, 1051
StyD4I	CCNGG	3 cut(s)	284, 518, 729
StyI	CCWWGG	2 cut(s)	558, 1005
TaaI	ACNGT	3 cut(s)	196, 585, 956
TaiI	ACGT	1 cut(s)	596
TaqI	TCGA	5 cut(s)	423, 460, 843, 951, 958
TasI	AATT	4 cut(s)	24, 88, 827, 909
TatI	WGTACW	2 cut(s)	9, 172
TfiI	GAWTC	1 cut(s)	948
Tru1I	TTAA	5 cut(s)	507, 822, 908, 933, 989
Tru9I	TTAA	5 cut(s)	507, 822, 908, 933, 989
TscAI	CASTG	4 cut(s)	100, 258, 391, 588
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	2 cut(s)	353, 1038
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	2 cut(s)	351, 764
TspGWI	ACGGA	2 cut(s)	555, 673
TspRI	CASTG	4 cut(s)	100, 258, 391, 588
VpaK11BI	GGWCC	3 cut(s)	652, 700, 882
VspI	ATTAAT	1 cut(s)	908
XapI	RAATTY	2 cut(s)	88, 827
XbaI	TCTAGA	1 cut(s)	110
XceI	RCATGY	1 cut(s)	310
XspI	CTAG	4 cut(s)	111, 350, 801, 1051
ZrmI	AGTACT	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.