Rorug02G0635700

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011661
Physical Location & Seq
Forward (+)
74934564 .. 74936999
2436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0635700.1

Sequence Viewer

Length: 1182 bp
ATGTCCCCTCCATCTAAGAGACTGAATAAATGGGTTAGAGATTGTGAATATTATGCATATAGGGCTACAATTTCTGCTGACCCAATACTAGATGCAAGTGATTGCACTGTTGTGGTCATTTATGAGGAACTAGGCGAATTGGCTTTTCTCAGACTTGGTAAAGACACGAGATGGACGTACGTTGATAAAAGCTTTTCCCTAAATCATGATGTTATTTATGCTCAAGATAAGTTTTATTCGGTTGATGGTAAGAATGGCAGTCTTCTAGCTTTTGATGTTCCCACTCATATGAACTCTACGACGGCAAAGAAAAAGAAGGTATTCTCTAATGTAGAACGCGTTGCTCCTGGAGTTAAACTTCAACAACAAATGCAGAATTACATCAAGAAATATATTGTGGAATCAAATGGAAAAGAATTGCTGATGGTTCAAAGGTATATTGATCTTGTAAATGATGAACGTAGGACAAGAAAAATCGAAGTTTTTGAATTGGATTTCCACAAGTGTGTGTGGAAAGAGATAAATACACTAGGTGATCTCGCTCTCTTCATAGGTGATAACCATTCAGTAGCTGTCTTGGCATCACATTTTCCAGGATGTCATCCAAATTGCATATACTTCAACCATGACCATGATCGTATTGAGTGGCATTTTGACGGGGCTGAACATCATGATTTTGATAAGTTCCTGAAAACACGAAAGATTAGAGAGGCAGAACAGGCAGCTCGCAGGTCAAGGATAACAAAGGCTGTGATCAGGGTTCGCTTTCCTGATAATACAACATTAGAGGCCACTTTTCATCCATCAGAAACAATTCAGAGCTTGGTTGATCTCCTCATGAAAGTGGTTGCTCGACCAGAATTATCGTTCCACATATATACTACTCCTCCTAAGAAGCTGATAAAAGACATGACACAGGACTTTTACTCTGCTGGCTTTGCTCCTGGTGCAATTTTATATTTTTCATATGATATTCCAAAAGGTGATGATACTGCAGATGTCAAGTCAGGTCCTTTCCTTCACGACGAGATCATGTCTTTGAAAGGTCCGGAACTTGTGAAAGAGCATGCAGAGCCTGTTCAGACTGCACCAGAACCTATACACGAGGCACCACCCCCTGTTGTCCAAGAGAAGAGGCCTGCCGAGAAAAAATCTGTTAAGCTGAAGTGGCTGAAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

393

Amino Acids

45.21

Weight (kDa)

7.27

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 14 - 212 8e-41 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 720
AccB1I GGYRCC 1 cut(s) 1108
AccII CGCG 1 cut(s) 339
AccIII TCCGGA 1 cut(s) 1048
AdeI CACNNNGTG 1 cut(s) 533
AfaI GTAC 1 cut(s) 179
AflIII ACRYGT 1 cut(s) 337
AgsI TTSAA 5 cut(s) 362, 431, 488, 622, 1042
AjnI CCWGG 3 cut(s) 346, 592, 943
AleI CACNNNNGTG 2 cut(s) 110, 504
AluBI AGCT 7 cut(s) 192, 269, 572, 725, 822, 898, 1162
AluI AGCT 7 cut(s) 192, 269, 572, 725, 822, 898, 1162
Alw26I GTCTC 1 cut(s) 13
AlwNI CAGNNNCTG 2 cut(s) 572, 1076
Aor13HI TCCGGA 1 cut(s) 1048
AoxI GGCC 2 cut(s) 789, 1136
ApeKI GCWGC 1 cut(s) 722
Asp700I GAANNNNTTC 2 cut(s) 320, 813
AspS9I GGNCC 2 cut(s) 1010, 1046
AsuHPI GGTGA 3 cut(s) 545, 566, 995
AvaII GGWCC 2 cut(s) 1010, 1046
BanI GGYRCC 1 cut(s) 1108
BauI CACGAG 2 cut(s) 166, 1103
BbsI GAAGAC 1 cut(s) 254
BbvI GCAGC 1 cut(s) 734
BccI CCATC 5 cut(s) 19, 165, 239, 418, 811
BceAI ACGGC 1 cut(s) 318
BciT130I CCWGG 3 cut(s) 348, 594, 945
BclI TGATCA 1 cut(s) 753
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 4 cut(s) 89, 131, 266, 530
BfmI CTRYAG 1 cut(s) 993
BfuAI ACCTGC 1 cut(s) 720
BisI GCNGC 1 cut(s) 723
BlsI GCNGC 1 cut(s) 724
Bme1390I CCNGG 3 cut(s) 348, 594, 945
Bme18I GGWCC 2 cut(s) 1010, 1046
BmgT120I GGNCC 2 cut(s) 1010, 1046
BmiI GGNNCC 1 cut(s) 1110
BmrFI CCNGG 3 cut(s) 348, 594, 945
BmsI GCATC 2 cut(s) 82, 590
BpiI GAAGAC 1 cut(s) 254
BpmI CTGGAG 1 cut(s) 369
BpuEI CTTGAG 1 cut(s) 207
BsaWI WCCGGW 1 cut(s) 1048
BsaXI ACNNNNNCTCC 2 cut(s) 871, 901
BseAI TCCGGA 1 cut(s) 1048
BseBI CCWGG 3 cut(s) 348, 594, 945
BseGI GGATG 3 cut(s) 601, 602, 799
BseMII CTCAG 1 cut(s) 163
BseRI GAGGAG 2 cut(s) 824, 876
BseXI GCAGC 1 cut(s) 734
BsgI GTGCAG 1 cut(s) 1071
Bsh1236I CGCG 1 cut(s) 339
BshFI GGCC 2 cut(s) 791, 1138
BshNI GGYRCC 1 cut(s) 1108
BsiSI CCGG 1 cut(s) 1049
BsiWI CGTACG 1 cut(s) 177
BsmAI GTCTC 1 cut(s) 13
BsnI GGCC 2 cut(s) 791, 1138
Bsp13I TCCGGA 1 cut(s) 1048
Bsp143I GATC 6 cut(s) 442, 535, 634, 753, 829, 1029
BspANI GGCC 2 cut(s) 791, 1138
BspCNI CTCAG 1 cut(s) 162
BspEI TCCGGA 1 cut(s) 1048
BspFNI CGCG 1 cut(s) 339
BspHI TCATGA 3 cut(s) 205, 670, 837
BspLI GGNNCC 1 cut(s) 1110
BspMAI CTGCAG 1 cut(s) 997
BspMI ACCTGC 1 cut(s) 720
BspT107I GGYRCC 1 cut(s) 1108
BssMI GATC 6 cut(s) 442, 535, 634, 753, 829, 1029
BssSI CACGAG 2 cut(s) 166, 1103
Bst2BI CACGAG 2 cut(s) 166, 1103
Bst2UI CCWGG 3 cut(s) 348, 594, 945
Bst4CI ACNGT 1 cut(s) 109
Bst6I CTCTTC 2 cut(s) 551, 1127
BstC8I GCNNGC 4 cut(s) 727, 934, 1068, 1140
BstDEI CTNAG 3 cut(s) 15, 149, 891
BstF5I GGATG 3 cut(s) 601, 602, 799
BstFNI CGCG 1 cut(s) 339
BstKTI GATC 6 cut(s) 445, 538, 637, 756, 832, 1032
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 6 cut(s) 442, 535, 634, 753, 829, 1029
BstMWI GCNNNNNNNGC 7 cut(s) 62, 578, 719, 938, 947, 1072, 1168
BstNI CCWGG 3 cut(s) 348, 594, 945
BstNSI RCATGY 1 cut(s) 1070
BstSCI CCNGG 3 cut(s) 346, 592, 943
BstSFI CTRYAG 1 cut(s) 993
BstUI CGCG 1 cut(s) 339
BstV1I GCAGC 1 cut(s) 734
BstV2I GAAGAC 1 cut(s) 254
BsuRI GGCC 2 cut(s) 791, 1138
BtsCI GGATG 3 cut(s) 601, 602, 799
BtsIMutI CAGTG 1 cut(s) 105
BveI ACCTGC 1 cut(s) 720
Cac8I GCNNGC 4 cut(s) 727, 934, 1068, 1140
CaiI CAGNNNCTG 2 cut(s) 572, 1076
CciI TCATGA 3 cut(s) 205, 670, 837
Cfr13I GGNCC 2 cut(s) 1010, 1046
Csp6I GTAC 1 cut(s) 178
CviAII CATG 8 cut(s) 206, 626, 632, 671, 838, 910, 1033, 1067
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 3 cut(s) 15, 149, 891
DpnI GATC 6 cut(s) 444, 537, 636, 755, 831, 1031
DpnII GATC 6 cut(s) 442, 535, 634, 753, 829, 1029
DraIII CACNNNGTG 1 cut(s) 533
Eam1104I CTCTTC 2 cut(s) 551, 1127
EarI CTCTTC 2 cut(s) 551, 1127
Eco147I AGGCCT 1 cut(s) 1138
Eco47I GGWCC 2 cut(s) 1010, 1046
EcoO109I RGGNCCY 1 cut(s) 1010
EcoRII CCWGG 3 cut(s) 346, 592, 943
EcoT22I ATGCAT 1 cut(s) 58
FaeI CATG 8 cut(s) 209, 629, 635, 674, 841, 913, 1036, 1070
FatI CATG 8 cut(s) 205, 625, 631, 670, 837, 909, 1032, 1066
FauNDI CATATG 2 cut(s) 288, 967
FbaI TGATCA 1 cut(s) 753
Fnu4HI GCNGC 1 cut(s) 723
FokI GGATG 3 cut(s) 588, 609, 786
Fsp4HI GCNGC 1 cut(s) 723
FspBI CTAG 4 cut(s) 89, 131, 266, 530
GluI GCNGC 1 cut(s) 723
GsuI CTGGAG 1 cut(s) 369
HaeIII GGCC 2 cut(s) 791, 1138
HapII CCGG 1 cut(s) 1049
Hin1II CATG 8 cut(s) 209, 629, 635, 674, 841, 913, 1036, 1070
HindIII AAGCTT 1 cut(s) 190
HinfI GANTC 1 cut(s) 401
HpaII CCGG 1 cut(s) 1049
HphI GGTGA 3 cut(s) 545, 566, 995
Hpy188I TCNGA 4 cut(s) 152, 808, 819, 1083
Hpy188III TCNNGA 9 cut(s) 206, 224, 385, 671, 688, 770, 838, 1022, 1049
Hpy99I CGWCG 2 cut(s) 304, 1028
HpyAV CCTTC 2 cut(s) 310, 1028
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 3 cut(s) 176, 180, 460
HpyCH4V TGCA 9 cut(s) 56, 95, 105, 373, 612, 950, 995, 1070, 1088
HpyF10VI GCNNNNNNNGC 7 cut(s) 62, 578, 719, 938, 947, 1072, 1168
HpyF3I CTNAG 3 cut(s) 15, 149, 891
HpySE526I ACGT 3 cut(s) 176, 180, 460
Hsp92II CATG 8 cut(s) 209, 629, 635, 674, 841, 913, 1036, 1070
Kpn2I TCCGGA 1 cut(s) 1048
Ksp22I TGATCA 1 cut(s) 753
Kzo9I GATC 6 cut(s) 442, 535, 634, 753, 829, 1029
LmnI GCTCC 2 cut(s) 349, 946
Lsp1109I GCAGC 1 cut(s) 734
LweI GCATC 2 cut(s) 82, 590
MaeI CTAG 4 cut(s) 89, 131, 266, 530
MaeII ACGT 3 cut(s) 176, 180, 460
MalI GATC 6 cut(s) 444, 537, 636, 755, 831, 1031
MboI GATC 6 cut(s) 442, 535, 634, 753, 829, 1029
MboII GAAGA 3 cut(s) 254, 538, 1144
MluCI AATT 9 cut(s) 69, 137, 376, 416, 488, 607, 813, 860, 951
MluI ACGCGT 1 cut(s) 337
MnlI CCTC 8 cut(s) 18, 118, 703, 781, 845, 897, 1099, 1128
Mph1103I ATGCAT 1 cut(s) 58
MroI TCCGGA 1 cut(s) 1048
MroXI GAANNNNTTC 2 cut(s) 320, 813
MseI TTAA 2 cut(s) 354, 1158
MslI CAYNNNNRTG 5 cut(s) 110, 287, 504, 630, 842
MspI CCGG 1 cut(s) 1049
MspR9I CCNGG 3 cut(s) 348, 594, 945
MvaI CCWGG 3 cut(s) 348, 594, 945
MvnI CGCG 1 cut(s) 339
MwoI GCNNNNNNNGC 7 cut(s) 62, 578, 719, 938, 947, 1072, 1168
NdeI CATATG 2 cut(s) 288, 967
NdeII GATC 6 cut(s) 442, 535, 634, 753, 829, 1029
NlaIII CATG 8 cut(s) 209, 629, 635, 674, 841, 913, 1036, 1070
NlaIV GGNNCC 1 cut(s) 1110
NmeAIII GCCGAG 1 cut(s) 1168
NsiI ATGCAT 1 cut(s) 58
NspI RCATGY 1 cut(s) 1070
OliI CACNNNNGTG 2 cut(s) 110, 504
PaeI GCATGC 1 cut(s) 1070
PagI TCATGA 3 cut(s) 205, 670, 837
PceI AGGCCT 1 cut(s) 1138
PcsI WCGNNNNNNNCGW 1 cut(s) 173
PdmI GAANNNNTTC 2 cut(s) 320, 813
PfeI GAWTC 1 cut(s) 401
Pfl23II CGTACG 1 cut(s) 177
PfoI TCCNGGA 2 cut(s) 346, 592
PkrI GCNGC 1 cut(s) 724
PpuMI RGGWCCY 1 cut(s) 1010
Psp5II RGGWCCY 1 cut(s) 1010
Psp6I CCWGG 3 cut(s) 346, 592, 943
PspGI CCWGG 3 cut(s) 346, 592, 943
PspLI CGTACG 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 1110
PspPI GGNCC 2 cut(s) 1010, 1046
PspPPI RGGWCCY 1 cut(s) 1010
PstI CTGCAG 1 cut(s) 997
PstNI CAGNNNCTG 2 cut(s) 572, 1076
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
RseI CAYNNNNRTG 5 cut(s) 110, 287, 504, 630, 842
SaqAI TTAA 2 cut(s) 354, 1158
SatI GCNGC 1 cut(s) 723
Sau3AI GATC 6 cut(s) 442, 535, 634, 753, 829, 1029
Sau96I GGNCC 2 cut(s) 1010, 1046
ScrFI CCNGG 3 cut(s) 348, 594, 945
SfaNI GCATC 2 cut(s) 82, 590
SfcI CTRYAG 1 cut(s) 993
SinI GGWCC 2 cut(s) 1010, 1046
SmiMI CAYNNNNRTG 5 cut(s) 110, 287, 504, 630, 842
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
SphI GCATGC 1 cut(s) 1070
Sse9I AATT 9 cut(s) 69, 137, 376, 416, 488, 607, 813, 860, 951
SseBI AGGCCT 1 cut(s) 1138
SspI AATATT 1 cut(s) 50
SspMI CTAG 4 cut(s) 89, 131, 266, 530
StuI AGGCCT 1 cut(s) 1138
StyD4I CCNGG 3 cut(s) 346, 592, 943
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 3 cut(s) 179, 183, 463
TaqI TCGA 2 cut(s) 477, 853
TasI AATT 9 cut(s) 69, 137, 376, 416, 488, 607, 813, 860, 951
TfiI GAWTC 1 cut(s) 401
Tru1I TTAA 2 cut(s) 354, 1158
Tru9I TTAA 2 cut(s) 354, 1158
TscAI CASTG 1 cut(s) 112
TseI GCWGC 1 cut(s) 722
TspDTI ATGAA 6 cut(s) 305, 471, 538, 788, 854, 954
TspRI CASTG 1 cut(s) 112
VpaK11BI GGWCC 2 cut(s) 1010, 1046
XceI RCATGY 1 cut(s) 1070
XmnI GAANNNNTTC 2 cut(s) 320, 813
XspI CTAG 4 cut(s) 89, 131, 266, 530
Zsp2I ATGCAT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.