Rorug03G0035600
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0010958
Physical Location & Seq
Reverse (-)
2823240 .. 2825223
1984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0035600.1

Sequence Viewer

Length: 996 bp
ATGATCCCAGCATGTTTCAGCCAACCCAACACAATCTCAAGCAGCTCTCAAGTGCCTCAAAACCTCATAACCTGCATATACCAAACTGAGCTTGGCAACTCGCCCACATATCTCACTCTCACTTGGTCCAAAGCCCTCTTCTCTCACTGCCTAACTATACATGCTCCAGACTCTTTTTCCATCACCATCTCTCTCAACCCAACAACCTTCTCATTTTTCCGAACTAAACCAGGTTCCAAGTCCATCCATCTAACCCACCACCATTACCAGAGAATCAAACTGTACTGGGACTTCACTCAGGCTAACTTTGCTCACAACTCGGCTGAGCCCGATTCTGGCTTCTATATTGCCATTTCTTGCAATGCCAAAGTTCAGTTCTTTCTAGGGGATCTTTTGGATGAGTTGACTCGACGATCAGGGTTAGTTGGAACTCACCAACTTGAACAACCGACCCTACTGTCAAGGCGAGAGCATGTGTTTGGGAATAGGAATTACATATCTCGAGCTCAGTTCTTGGGGTCTAAGCATGAAATTGGTATAGAGTGCAGTGAAGGTACTCTTAAAGTAAAGGTAGATGGAGAAACTAGCCTAATTGTGAAAAGGTTGGCTTGGAAGTTCAGAGGCAATGAGAGAATTTTCGTTGGTGGAGTCGAATTTGAATTCTATTGGGATGTGTTCAACTGGGTTAATAATCGTAAAGGTACTACTAATGGCACTGGACATGGTGTATTTGTTTTCCAAGTTGGTGATGGTGGGGTGTGGCCAGAAATGGTAGGTACTGAGAAGAGGTTGATGAGGAAGAGCTTGTCAATGTCGGCTGCTTCAGCATCAATGCCTTCGATGGTCTCATTATCACCATCCCCATCATGCTCGAGTGTGTTGCAATGGGCTGAGGAAAGCAGTGATGGTGGGAGGAGTTCATGTTCTTCATCCACTAGGTCCTGTGGTAGTAATGGAGGGTTTTCTTTGTTGCTCTATGCTTGGAGGAAGGATTGA

Protein Analysis

331

Amino Acids

36.82

Weight (kDa)

8.75

Isoelectric Point (pI)

48.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 19 - 329 5.6e-75 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010958)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01020
fragaria_vesca FvH4_6g09140 FvH4_6g09140 FvH4_6g09140
malus_domestica MD04G1180400.v1.1 MD12G1195800.v1.1
prunus_persica Prupe.6G300300_v2.0.a1
pyrus_communis pycom04g15950 pycom12g18200
rosa_chinensis RchiOBHm_Chr3g0459351
rosa_laevigata RLG00000025088
rosa_multiflora Rmu_sc0006944.1_g000003
rosa_roxburghii Rroxscaffold_6G00420240
rosa_rugosa Rorug03G0035600 Rorug03G0035700
rosa_samantha Rh3AG093700 Rh3BG096600 Rh3CG097800 Rh3DG097200
rosa_wichuraiana Rw3G008060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 457
Acc36I ACCTGC 1 cut(s) 80
AclWI GGATC 1 cut(s) 396
AcoI YGGCCR 1 cut(s) 761
AcsI RAATTY 3 cut(s) 633, 653, 659
AcuI CTGAAG 1 cut(s) 807
AfaI GTAC 4 cut(s) 284, 556, 703, 778
AfiI CCNNNNNNNGG 1 cut(s) 335
AgsI TTSAA 3 cut(s) 443, 659, 679
AjnI CCWGG 1 cut(s) 229
AjuI GAANNNNNNNTTGG 4 cut(s) 122, 154, 359, 391
AloI GAACNNNNNNTCC 2 cut(s) 907, 939
AluBI AGCT 4 cut(s) 45, 91, 506, 804
AluI AGCT 4 cut(s) 45, 91, 506, 804
Alw21I GWGCWC 1 cut(s) 508
Alw26I GTCTC 1 cut(s) 850
AlwI GGATC 1 cut(s) 396
Ama87I CYCGRG 2 cut(s) 501, 871
AoxI GGCC 1 cut(s) 761
ApeKI GCWGC 2 cut(s) 42, 818
ApoI RAATTY 3 cut(s) 633, 653, 659
AspS9I GGNCC 2 cut(s) 126, 939
AsuHPI GGTGA 4 cut(s) 175, 425, 758, 846
AvaI CYCGRG 2 cut(s) 501, 871
AvaII GGWCC 2 cut(s) 126, 939
BalI TGGCCA 1 cut(s) 763
BanII GRGCYC 2 cut(s) 330, 508
BarI GAAGNNNNNNTAC 2 cut(s) 275, 307
Bbv12I GWGCWC 1 cut(s) 508
BbvCI CCTCAGC 1 cut(s) 891
BbvI GCAGC 2 cut(s) 54, 805
BcgI CGANNNNNNTGC 2 cut(s) 862, 896
BciT130I CCWGG 1 cut(s) 231
BcoDI GTCTC 1 cut(s) 850
BfaI CTAG 3 cut(s) 383, 585, 936
BfuAI ACCTGC 1 cut(s) 80
BisI GCNGC 2 cut(s) 43, 819
BlpI GCTNAGC 1 cut(s) 324
BlsI GCNGC 2 cut(s) 44, 820
Bme1390I CCNGG 1 cut(s) 231
Bme18I GGWCC 2 cut(s) 126, 939
BmeT110I CYCGRG 2 cut(s) 501, 871
BmgT120I GGNCC 2 cut(s) 126, 939
BmiI GGNNCC 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 231
BmrI ACTGGG 2 cut(s) 295, 691
BmsI GCATC 1 cut(s) 836
BmuI ACTGGG 2 cut(s) 295, 691
BpmI CTGGAG 1 cut(s) 150
Bpu10I CCTNAGC 1 cut(s) 891
Bpu1102I GCTNAGC 1 cut(s) 324
BpuEI CTTGAG 2 cut(s) 22, 33
BsaI GGTCTC 1 cut(s) 850
BsaXI ACNNNNNCTCC 2 cut(s) 907, 937
Bsc4I CCNNNNNNNGG 1 cut(s) 335
Bse1I ACTGG 3 cut(s) 290, 686, 721
Bse3DI GCAATG 3 cut(s) 367, 631, 890
BseBI CCWGG 1 cut(s) 231
BseGI GGATG 5 cut(s) 243, 403, 676, 857, 929
BseLI CCNNNNNNNGG 1 cut(s) 335
BseMI GCAATG 3 cut(s) 367, 631, 890
BseMII CTCAG 6 cut(s) 78, 311, 315, 521, 771, 882
BseNI ACTGG 3 cut(s) 290, 686, 721
BseRI GAGGAG 1 cut(s) 928
BseXI GCAGC 2 cut(s) 54, 805
BseYI CCCAGC 1 cut(s) 7
BsgI GTGCAG 1 cut(s) 565
BshFI GGCC 1 cut(s) 763
BsiHKAI GWGCWC 1 cut(s) 508
BsiHKCI CYCGRG 2 cut(s) 501, 871
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 1 cut(s) 335
BsmAI GTCTC 1 cut(s) 850
BsmFI GGGAC 1 cut(s) 302
BsnI GGCC 1 cut(s) 763
Bso31I GGTCTC 1 cut(s) 850
BsoBI CYCGRG 2 cut(s) 501, 871
Bsp1286I GDGCHC 2 cut(s) 330, 508
Bsp143I GATC 3 cut(s) 3, 388, 413
Bsp1720I GCTNAGC 1 cut(s) 324
BspANI GGCC 1 cut(s) 763
BspCNI CTCAG 6 cut(s) 79, 310, 316, 520, 772, 883
BspLI GGNNCC 1 cut(s) 235
BspMI ACCTGC 1 cut(s) 80
BspPI GGATC 1 cut(s) 396
BspQI GCTCTTC 1 cut(s) 794
BspTNI GGTCTC 1 cut(s) 850
BsrDI GCAATG 3 cut(s) 367, 631, 890
BsrI ACTGG 3 cut(s) 290, 686, 721
BssMI GATC 3 cut(s) 3, 388, 413
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 2 cut(s) 282, 459
Bst6I CTCTTC 3 cut(s) 143, 779, 794
BstDEI CTNAG 7 cut(s) 87, 297, 324, 507, 522, 780, 891
BstF5I GGATG 5 cut(s) 243, 403, 676, 857, 929
BstKTI GATC 3 cut(s) 6, 391, 416
BstMAI GTCTC 1 cut(s) 850
BstMBI GATC 3 cut(s) 3, 388, 413
BstMWI GCNNNNNNNGC 2 cut(s) 308, 824
BstNI CCWGG 1 cut(s) 231
BstNSI RCATGY 3 cut(s) 15, 164, 476
BstSCI CCNGG 1 cut(s) 229
BstV1I GCAGC 2 cut(s) 54, 805
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
BsuRI GGCC 1 cut(s) 763
BtsCI GGATG 5 cut(s) 243, 403, 676, 857, 929
BtsI GCAGTG 3 cut(s) 145, 553, 907
BtsIMutI CAGTG 4 cut(s) 145, 553, 714, 907
BveI ACCTGC 1 cut(s) 80
Cfr13I GGNCC 2 cut(s) 126, 939
CsiI ACCWGGT 1 cut(s) 229
Csp6I GTAC 4 cut(s) 283, 555, 702, 777
CviAII CATG 7 cut(s) 12, 161, 473, 527, 722, 867, 921
CviQI GTAC 4 cut(s) 283, 555, 702, 777
DdeI CTNAG 7 cut(s) 87, 297, 324, 507, 522, 780, 891
DpnI GATC 3 cut(s) 5, 390, 415
DpnII GATC 3 cut(s) 3, 388, 413
DrdI GACNNNNNNGTC 1 cut(s) 457
DseDI GACNNNNNNGTC 1 cut(s) 457
EaeI YGGCCR 1 cut(s) 761
Eam1104I CTCTTC 3 cut(s) 143, 779, 794
EarI CTCTTC 3 cut(s) 143, 779, 794
Ecl136II GAGCTC 1 cut(s) 506
Eco24I GRGCYC 2 cut(s) 330, 508
Eco31I GGTCTC 1 cut(s) 850
Eco47I GGWCC 2 cut(s) 126, 939
Eco53kI GAGCTC 1 cut(s) 506
Eco57I CTGAAG 1 cut(s) 807
Eco88I CYCGRG 2 cut(s) 501, 871
EcoICRI GAGCTC 1 cut(s) 506
EcoO109I RGGNCCY 1 cut(s) 939
EcoRI GAATTC 1 cut(s) 659
EcoRII CCWGG 1 cut(s) 229
EcoT38I GRGCYC 2 cut(s) 330, 508
FaeI CATG 7 cut(s) 15, 164, 476, 530, 725, 870, 924
FalI AAGNNNNNCTT 4 cut(s) 543, 575, 592, 624
FaqI GGGAC 1 cut(s) 302
FatI CATG 7 cut(s) 11, 160, 472, 526, 721, 866, 920
Fnu4HI GCNGC 2 cut(s) 43, 819
FokI GGATG 5 cut(s) 230, 410, 683, 844, 916
FriOI GRGCYC 2 cut(s) 330, 508
Fsp4HI GCNGC 2 cut(s) 43, 819
FspBI CTAG 3 cut(s) 383, 585, 936
GluI GCNGC 2 cut(s) 43, 819
GsaI CCCAGC 1 cut(s) 11
GsuI CTGGAG 1 cut(s) 150
HaeIII GGCC 1 cut(s) 763
Hin1II CATG 7 cut(s) 15, 164, 476, 530, 725, 870, 924
HincII GTYRAC 1 cut(s) 405
HindII GTYRAC 1 cut(s) 405
HinfI GANTC 5 cut(s) 170, 273, 332, 406, 648
HphI GGTGA 4 cut(s) 175, 425, 758, 846
Hpy166II GTNNAC 1 cut(s) 405
Hpy188I TCNGA 2 cut(s) 221, 620
Hpy188III TCNNGA 2 cut(s) 167, 501
Hpy8I GTNNAC 1 cut(s) 405
Hpy99I CGWCG 1 cut(s) 414
HpyAV CCTTC 4 cut(s) 217, 545, 846, 982
HpyCH4III ACNGT 2 cut(s) 282, 459
HpyCH4V TGCA 4 cut(s) 75, 360, 546, 883
HpyF10VI GCNNNNNNNGC 2 cut(s) 308, 824
HpyF3I CTNAG 7 cut(s) 87, 297, 324, 507, 522, 780, 891
Hsp92II CATG 7 cut(s) 15, 164, 476, 530, 725, 870, 924
Kzo9I GATC 3 cut(s) 3, 388, 413
LguI GCTCTTC 1 cut(s) 794
LmnI GCTCC 1 cut(s) 169
Lsp1109I GCAGC 2 cut(s) 54, 805
LweI GCATC 1 cut(s) 836
MabI ACCWGGT 1 cut(s) 229
MaeI CTAG 3 cut(s) 383, 585, 936
MalI GATC 3 cut(s) 5, 390, 415
MboI GATC 3 cut(s) 3, 388, 413
MboII GAAGA 4 cut(s) 130, 796, 811, 918
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 2 cut(s) 330, 508
MlsI TGGCCA 1 cut(s) 763
MluCI AATT 6 cut(s) 490, 531, 591, 633, 653, 659
MluNI TGGCCA 1 cut(s) 763
MlyI GAGTC 3 cut(s) 164, 400, 657
MmeI TCCRAC 1 cut(s) 406
Mox20I TGGCCA 1 cut(s) 763
MscI TGGCCA 1 cut(s) 763
MseI TTAA 2 cut(s) 561, 687
Msp20I TGGCCA 1 cut(s) 763
MspR9I CCNGG 1 cut(s) 231
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 308, 824
NdeII GATC 3 cut(s) 3, 388, 413
NlaIII CATG 7 cut(s) 15, 164, 476, 530, 725, 870, 924
NlaIV GGNNCC 1 cut(s) 235
NmeAIII GCCGAG 1 cut(s) 299
NspI RCATGY 3 cut(s) 15, 164, 476
PaeR7I CTCGAG 2 cut(s) 501, 871
PciSI GCTCTTC 1 cut(s) 794
PfeI GAWTC 2 cut(s) 273, 332
PkrI GCNGC 2 cut(s) 44, 820
PleI GAGTC 3 cut(s) 164, 400, 656
PpsI GAGTC 3 cut(s) 164, 400, 656
PpuMI RGGWCCY 1 cut(s) 939
Psp124BI GAGCTC 1 cut(s) 508
Psp5II RGGWCCY 1 cut(s) 939
Psp6I CCWGG 1 cut(s) 229
PspFI CCCAGC 1 cut(s) 7
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 235
PspPI GGNCC 2 cut(s) 126, 939
PspPPI RGGWCCY 1 cut(s) 939
PspXI VCTCGAGB 1 cut(s) 871
PsuI RGATCY 1 cut(s) 388
RsaI GTAC 4 cut(s) 284, 556, 703, 778
RsaNI GTAC 4 cut(s) 283, 555, 702, 777
SacI GAGCTC 1 cut(s) 508
SapI GCTCTTC 1 cut(s) 794
SaqAI TTAA 2 cut(s) 561, 687
SatI GCNGC 2 cut(s) 43, 819
Sau3AI GATC 3 cut(s) 3, 388, 413
Sau96I GGNCC 2 cut(s) 126, 939
SchI GAGTC 3 cut(s) 164, 400, 657
ScrFI CCNGG 1 cut(s) 231
SduI GDGCHC 2 cut(s) 330, 508
SexAI ACCWGGT 1 cut(s) 229
SfaNI GCATC 1 cut(s) 836
Sfr274I CTCGAG 2 cut(s) 501, 871
SinI GGWCC 2 cut(s) 126, 939
SlaI CTCGAG 2 cut(s) 501, 871
SmlI CTYRAG 4 cut(s) 37, 48, 501, 871
SmoI CTYRAG 4 cut(s) 37, 48, 501, 871
Sse9I AATT 6 cut(s) 490, 531, 591, 633, 653, 659
SspMI CTAG 3 cut(s) 383, 585, 936
SstI GAGCTC 1 cut(s) 508
StyD4I CCNGG 1 cut(s) 229
TaaI ACNGT 2 cut(s) 282, 459
TaqI TCGA 5 cut(s) 409, 502, 651, 839, 872
TasI AATT 6 cut(s) 490, 531, 591, 633, 653, 659
TatI WGTACW 1 cut(s) 282
TfiI GAWTC 2 cut(s) 273, 332
Tru1I TTAA 2 cut(s) 561, 687
Tru9I TTAA 2 cut(s) 561, 687
TscAI CASTG 4 cut(s) 152, 553, 721, 907
TseI GCWGC 2 cut(s) 42, 818
TspDTI ATGAA 3 cut(s) 543, 909, 918
TspRI CASTG 4 cut(s) 152, 553, 721, 907
VpaK11BI GGWCC 2 cut(s) 126, 939
XapI RAATTY 3 cut(s) 633, 653, 659
XceI RCATGY 3 cut(s) 15, 164, 476
XcmI CCANNNNNNNNNTGG 2 cut(s) 89, 746
XhoI CTCGAG 2 cut(s) 501, 871
XspI CTAG 3 cut(s) 383, 585, 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.