Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0010958

Physical Location & Seq

Genomic Coordinates Reverse (-)

2825521 .. 2826540

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0035700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAAGATCACCAGCGTTGTTGTGCATGCCCTAAACGACTCCACGGTGGCCGGATTCGTGGACGACACGACGCCTTTCGAGCAATGCAGCAAGGAATGCTTCGACGAGCTCGACCTTAACGCCGACGGCGTGTTGTCGAAGGAGGAGCTTCGTTCGGGTTTTGGTAAGCTGCTGCCGGGCATAGGGTACGTGTCACAGCCCAAAGAGGAGTTGAATGGTTTGCATGATGAAATATTTGAAAGGTTCGATGCGGATCAAAACGGCGTCGTTGACCGGGGTGAGTTTAAAGAGCTGTTGAGGGAGATCATGCTCGGGGTGGCGCGTGGGATTGGGGGGTCGCCGGTGCTGGTGGCGCTTGAGCATGGGAGTCTGCTTATGAGGGCAGCTCAACACGAACAGAATAAGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

136

Amino Acids

14.84

Weight (kDa)

4.68

Isoelectric Point (pI)

28.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_5	PF13202	31 - 52	5.6e-06	EF hand
EF-hand_7	PF13499	31 - 99	1.7e-09	EF-hand domain pair
EF-hand_1	PF00036	76 - 101	1.9e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01020
fragaria_vesca	FvH4_6g09140 FvH4_6g09140 FvH4_6g09140
malus_domestica	MD04G1180400.v1.1 MD12G1195800.v1.1
prunus_persica	Prupe.6G300300_v2.0.a1
pyrus_communis	pycom04g15950 pycom12g18200
rosa_chinensis	RchiOBHm_Chr3g0459351
rosa_laevigata	RLG00000025088
rosa_multiflora	Rmu_sc0006944.1_g000003
rosa_roxburghii	Rroxscaffold_6G00420240
rosa_rugosa	Rorug03G0035600 Rorug03G0035700
rosa_samantha	Rh3AG093700 Rh3BG096600 Rh3CG097800 Rh3DG097200
rosa_wichuraiana	Rw3G008060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	322
AciI	CCGC	1 cut(s)	251
AclWI	GGATC	1 cut(s)	261
AcoI	YGGCCR	1 cut(s)	48
AcyI	GRCGYC	2 cut(s)	71, 264
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	182
AflIII	ACRYGT	1 cut(s)	189
AgsI	TTSAA	2 cut(s)	214, 239
AluBI	AGCT	5 cut(s)	109, 148, 169, 292, 386
AluI	AGCT	5 cut(s)	109, 148, 169, 292, 386
Alw21I	GWGCWC	1 cut(s)	111
AlwI	GGATC	1 cut(s)	261
Ama87I	CYCGRG	1 cut(s)	311
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	4 cut(s)	87, 169, 172, 383
AspLEI	GCGC	2 cut(s)	322, 355
AsuC2I	CCSGG	2 cut(s)	177, 275
AsuHPI	GGTGA	1 cut(s)	290
AvaI	CYCGRG	1 cut(s)	311
BanII	GRGCYC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	4 cut(s)	99, 156, 159, 395
BceAI	ACGGC	2 cut(s)	142, 277
BcnI	CCSGG	2 cut(s)	177, 275
BfoI	RGCGCY	1 cut(s)	356
BisI	GCNGC	4 cut(s)	88, 170, 173, 384
BlsI	GCNGC	4 cut(s)	89, 171, 174, 385
Bme1390I	CCNGG	2 cut(s)	177, 275
BmeT110I	CYCGRG	1 cut(s)	311
BmrFI	CCNGG	2 cut(s)	177, 275
BmsI	GCATC	1 cut(s)	238
BplI	GAGNNNNNCTC	2 cut(s)	370, 402
BpuEI	CTTGAG	1 cut(s)	377
BpuMI	CCSGG	2 cut(s)	177, 275
BsaAI	YACGTR	1 cut(s)	190
BsaBI	GATNNNNATC	1 cut(s)	252
BsaHI	GRCGYC	2 cut(s)	71, 264
BsaJI	CCNNGG	2 cut(s)	42, 274
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse118I	RCCGGY	1 cut(s)	340
Bse3DI	GCAATG	1 cut(s)	89
Bse8I	GATNNNNATC	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	42, 274
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMI	GCAATG	1 cut(s)	89
BseRI	GAGGAG	2 cut(s)	158, 221
BseXI	GCAGC	4 cut(s)	99, 156, 159, 395
Bsh1236I	CGCG	1 cut(s)	322
BshFI	GGCC	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	311
BsiSI	CCGG	4 cut(s)	51, 176, 274, 341
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmI	GAATGC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	50
BsoBI	CYCGRG	1 cut(s)	311
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	3 cut(s)	6, 253, 303
BspACI	CCGC	1 cut(s)	251
BspANI	GGCC	1 cut(s)	50
BspFNI	CGCG	1 cut(s)	322
BspPI	GGATC	1 cut(s)	261
BsrDI	GCAATG	1 cut(s)	89
BsrFI	RCCGGY	1 cut(s)	340
BssAI	RCCGGY	1 cut(s)	340
BssECI	CCNNGG	2 cut(s)	42, 274
BssMI	GATC	3 cut(s)	6, 253, 303
BssNI	GRCGYC	2 cut(s)	71, 264
Bst4CI	ACNGT	1 cut(s)	46
BstACI	GRCGYC	2 cut(s)	71, 264
BstAPI	GCANNNNNTGC	1 cut(s)	96
BstBAI	YACGTR	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	27
BstDSI	CCRYGG	1 cut(s)	42
BstFNI	CGCG	1 cut(s)	322
BstH2I	RGCGCY	1 cut(s)	356
BstHHI	GCGC	2 cut(s)	322, 355
BstKTI	GATC	3 cut(s)	9, 256, 306
BstMBI	GATC	3 cut(s)	6, 253, 303
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 96, 352
BstNSI	RCATGY	1 cut(s)	29
BstSCI	CCNGG	2 cut(s)	175, 273
BstUI	CGCG	1 cut(s)	322
BstV1I	GCAGC	4 cut(s)	99, 156, 159, 395
BsuRI	GGCC	1 cut(s)	50
BtgI	CCRYGG	1 cut(s)	42
Cac8I	GCNNGC	1 cut(s)	27
CfoI	GCGC	2 cut(s)	322, 355
Cfr10I	RCCGGY	1 cut(s)	340
CseI	GACGC	2 cut(s)	79, 253
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	4 cut(s)	26, 224, 307, 362
CviJI	RGCY	7 cut(s)	50, 109, 148, 169, 199, 292, 386
CviKI_1	RGCY	7 cut(s)	50, 109, 148, 169, 199, 292, 386
CviQI	GTAC	1 cut(s)	187
DpnI	GATC	3 cut(s)	8, 255, 305
DpnII	GATC	3 cut(s)	6, 253, 303
DraI	TTTAAA	1 cut(s)	286
EaeI	YGGCCR	1 cut(s)	48
Ecl136II	GAGCTC	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	111
Eco53kI	GAGCTC	1 cut(s)	109
Eco88I	CYCGRG	1 cut(s)	311
EcoICRI	GAGCTC	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	111
FaeI	CATG	4 cut(s)	29, 227, 310, 365
FaiI	YATR	6 cut(s)	27, 182, 225, 308, 363, 377
FalI	AAGNNNNNCTT	2 cut(s)	83, 115
FatI	CATG	4 cut(s)	25, 223, 306, 361
Fnu4HI	GCNGC	4 cut(s)	88, 170, 173, 384
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	4 cut(s)	88, 170, 173, 384
GlaI	GCGC	2 cut(s)	321, 354
GluI	GCNGC	4 cut(s)	88, 170, 173, 384
HaeII	RGCGCY	1 cut(s)	356
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	4 cut(s)	51, 176, 274, 341
HgaI	GACGC	2 cut(s)	79, 253
HhaI	GCGC	2 cut(s)	322, 355
Hin1I	GRCGYC	2 cut(s)	71, 264
Hin1II	CATG	4 cut(s)	29, 227, 310, 365
Hin6I	GCGC	2 cut(s)	320, 353
HinP1I	GCGC	2 cut(s)	320, 353
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	3 cut(s)	38, 54, 367
HpaII	CCGG	4 cut(s)	51, 176, 274, 341
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	2 cut(s)	61, 271
Hpy8I	GTNNAC	2 cut(s)	61, 271
Hpy99I	CGWCG	4 cut(s)	73, 107, 128, 269
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	3 cut(s)	25, 87, 223
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 96, 352
HpySE526I	ACGT	1 cut(s)	189
Hsp92I	GRCGYC	2 cut(s)	71, 264
Hsp92II	CATG	4 cut(s)	29, 227, 310, 365
HspAI	GCGC	2 cut(s)	320, 353
Kzo9I	GATC	3 cut(s)	6, 253, 303
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	6 cut(s)	25, 64, 189, 287, 332, 354
Lsp1109I	GCAGC	4 cut(s)	99, 156, 159, 395
LweI	GCATC	1 cut(s)	238
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	192
MalI	GATC	3 cut(s)	8, 255, 305
MboI	GATC	3 cut(s)	6, 253, 303
MboII	GAAGA	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	111
MlyI	GAGTC	2 cut(s)	32, 376
MnlI	CCTC	4 cut(s)	136, 199, 291, 372
MseI	TTAA	2 cut(s)	117, 285
MspI	CCGG	4 cut(s)	51, 176, 274, 341
MspR9I	CCNGG	2 cut(s)	177, 275
Mva1269I	GAATGC	1 cut(s)	101
MvnI	CGCG	1 cut(s)	322
MwoI	GCNNNNNNNGC	3 cut(s)	79, 96, 352
NciI	CCSGG	2 cut(s)	177, 275
NdeII	GATC	3 cut(s)	6, 253, 303
NlaIII	CATG	4 cut(s)	29, 227, 310, 365
NmuCI	GTSAC	1 cut(s)	192
NspI	RCATGY	1 cut(s)	29
PaeI	GCATGC	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	2 cut(s)	108, 126
PctI	GAATGC	1 cut(s)	101
PfeI	GAWTC	1 cut(s)	54
PkrI	GCNGC	4 cut(s)	89, 171, 174, 385
PleI	GAGTC	2 cut(s)	32, 375
PpsI	GAGTC	2 cut(s)	32, 375
Ppu21I	YACGTR	1 cut(s)	190
Psp124BI	GAGCTC	1 cut(s)	111
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SacI	GAGCTC	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	117, 285
SatI	GCNGC	4 cut(s)	88, 170, 173, 384
Sau3AI	GATC	3 cut(s)	6, 253, 303
SchI	GAGTC	2 cut(s)	32, 376
ScrFI	CCNGG	2 cut(s)	177, 275
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	8 cut(s)	111, 117, 150, 171, 192, 245, 294, 388
SfaNI	GCATC	1 cut(s)	238
SgrAI	CRCCGGYG	1 cut(s)	340
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
SphI	GCATGC	1 cut(s)	29
SsiI	CCGC	1 cut(s)	251
SspI	AATATT	1 cut(s)	234
SstI	GAGCTC	1 cut(s)	111
StyD4I	CCNGG	2 cut(s)	175, 273
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	5 cut(s)	78, 102, 111, 137, 246
TfiI	GAWTC	1 cut(s)	54
Tru1I	TTAA	2 cut(s)	117, 285
Tru9I	TTAA	2 cut(s)	117, 285
TseFI	GTSAC	1 cut(s)	192
TseI	GCWGC	4 cut(s)	87, 169, 172, 383
Tsp45I	GTSAC	1 cut(s)	192
TspDTI	ATGAA	2 cut(s)	17, 243
XceI	RCATGY	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.