Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005478

Physical Location & Seq

Genomic Coordinates Forward (+)

6802618 .. 6804534

Gene Structure 1917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0087200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGAGAAACAAACGCAGGGAGGATGTTGCCAGTTCCATCACTGAAGATCTCCACATGGAAATCTTAGTAAGACTCCCGGTAAAATCACTCATTCGGTTTCAGTGTGTATGCAAGCGGTGGAGGGGTTTGATTCGCAGCTCAAGTTTTGTTACAGCACATATCAGACAACATTCCCATACCCATCTAATTACGGATGACCGCTCATGTTTTGACCAGGTTGAGCTTTGTTACTCTCTTTTTCGTTGTGAAAGATTTGAGCAGTCCCTGGAGTTAAAACCTCCCTTTCATCCCCAACTAGACTATAATTCCCGACTAGACTACTTCAAGATATATGGTTCAAAAAACGGTTTAGTGTGTCTTGCTGGGAATGTAATGGATTCAAGCAGCCCTATATACATATGGAACCCCTCTGTTAGGAAATTCAGGATTCTTCCACAACCAAGATTCGATCATTATTGTGTGGACTGTTTTCCCAAGCATGTTGATATCCCTCTCTTATTTGGATTCCACCCAGAACTAAATGACTATAAGGTGATAAGGATGATGCTGCCTGGTTCCATCAAAATGGAGGTTTATACTCTTAGCACAAACTCTTGGAAGATTATTCAAGTCATTCCACCTTGGCTCAATACCATGAAGTTTTCTACTCGATCTGAATTTTGGAATGGAATGGCATATTGGCTTGCCACCAAAGATTCAATGGTTAGGGTTGTGTCGTTTGATACTAACAATGAAGAATTTGAAGAGCTAGCGGTCCCAATTACGATTTTGAGTGATGATTGGGATGCATATATCGAAGTGTACAAAGAATCGATTTGCCTACTTCATGTCAAAGTTGAACTGGATAATGACGTTGGCTGTGACTGTATCGACTTCTGGGTTCTGCAAGAACGGTGTTTTAAGAAACTGCATACTGTTTATTTTCCTCAAGTATATCATGTCATTTGGGGCTTTAGCGTGGATAATGAGCTCTTACTAGAAGATTATTCTTCTGATGGCGAATTGGCGTTTTATAATCTTGAATCCAAACAGGTTCAGAAAATTCGAATCAGTTCCTATTTAAGCGTACATACTTACATTGAAAGTTTAGTTTTATTTGATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052866 GO:0071704 GO:0106019

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

368

Amino Acids

43.48

Weight (kDa)

5.91

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	13 - 49	1.5e-08	F-box domain
FBA_1	PF07734	80 - 295	1.4e-14	F-box associated beta propeller domain
FBA_3	PF08268	91 - 350	4.5e-19	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37440 AT2G37440 AT2G37440
fragaria_vesca	FvH4_6g14390 FvH4_6g14390 FvH4_6g14390 FvH4_6g14390 FvH4_6g14390 FvH4_6g14390
malus_domestica	MD04G1120100.v1.1 MD12G1137500.v1.1
prunus_persica	Prupe.6G249400_v2.0.a1 Prupe.6G249400_v2.0.a1 Prupe.6G249400_v2.0.a1 Prupe.6G249400_v2.0.a1
pyrus_communis	pycom04g10930 pycom12g13150
rosa_chinensis	RchiOBHm_Chr3g0467461
rosa_laevigata	RLG00000024503
rosa_multiflora	Rmu_sc0001601.1_g000003
rosa_roxburghii	Rroxscaffold_6G00413660
rosa_rugosa	Rorug03G0087200 Rorug03G0087300 Rorug03G0087400
rosa_samantha	Rh3AG135600 Rh3BG157200 Rh3CG157100 Rh3DG158000
rosa_wichuraiana	Rw3G012880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1014
AccBSI	CCGCTC	1 cut(s)	201
AciI	CCGC	3 cut(s)	115, 199, 752
AcsI	RAATTY	4 cut(s)	419, 656, 737, 1041
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	2 cut(s)	803, 1068
AfiI	CCNNNNNNNGG	1 cut(s)	414
AgsI	TTSAA	9 cut(s)	325, 339, 381, 608, 699, 743, 839, 1022, 1082
AjnI	CCWGG	3 cut(s)	213, 264, 550
AjuI	GAANNNNNNNTTGG	2 cut(s)	661, 693
AluBI	AGCT	4 cut(s)	138, 223, 748, 970
AluI	AGCT	4 cut(s)	138, 223, 748, 970
Alw21I	GWGCWC	1 cut(s)	972
AlwNI	CAGNNNCTG	1 cut(s)	265
ApeKI	GCWGC	3 cut(s)	135, 384, 547
ApoI	RAATTY	4 cut(s)	419, 656, 737, 1041
Asp700I	GAANNNNTTC	1 cut(s)	1051
AspS9I	GGNCC	1 cut(s)	754
AsuC2I	CCSGG	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	544
AsuII	TTCGAA	1 cut(s)	1045
AsuNHI	GCTAGC	1 cut(s)	748
AvaII	GGWCC	1 cut(s)	754
BanII	GRGCYC	1 cut(s)	972
Bbv12I	GWGCWC	1 cut(s)	972
BbvI	GCAGC	3 cut(s)	147, 396, 534
BccI	CCATC	4 cut(s)	44, 189, 566, 989
BciT130I	CCWGG	3 cut(s)	215, 266, 552
BcnI	CCSGG	1 cut(s)	77
BfaI	CTAG	4 cut(s)	296, 314, 749, 977
BglII	AGATCT	1 cut(s)	46
BisI	GCNGC	3 cut(s)	136, 385, 548
BlsI	GCNGC	3 cut(s)	137, 386, 549
Bme1390I	CCNGG	4 cut(s)	77, 215, 266, 552
Bme18I	GGWCC	1 cut(s)	754
BmgT120I	GGNCC	1 cut(s)	754
BmiI	GGNNCC	3 cut(s)	404, 556, 756
BmrFI	CCNGG	4 cut(s)	77, 215, 266, 552
BmsI	GCATC	2 cut(s)	534, 775
BmtI	GCTAGC	1 cut(s)	752
BpmI	CTGGAG	1 cut(s)	287
Bpu14I	TTCGAA	1 cut(s)	1045
BpuEI	CTTGAG	2 cut(s)	124, 912
BpuMI	CCSGG	1 cut(s)	77
Bsa29I	ATCGAT	1 cut(s)	812
BsaJI	CCNNGG	2 cut(s)	264, 620
Bsc4I	CCNNNNNNNGG	1 cut(s)	414
Bse1I	ACTGG	2 cut(s)	30, 846
BseBI	CCWGG	3 cut(s)	215, 266, 552
BseCI	ATCGAT	1 cut(s)	812
BseDI	CCNNGG	2 cut(s)	264, 620
BseGI	GGATG	5 cut(s)	28, 199, 286, 546, 790
BseLI	CCNNNNNNNGG	1 cut(s)	414
BseNI	ACTGG	2 cut(s)	30, 846
BseXI	GCAGC	3 cut(s)	147, 396, 534
BseYI	CCCAGC	1 cut(s)	362
BshVI	ATCGAT	1 cut(s)	812
BsiHKAI	GWGCWC	1 cut(s)	972
BsiSI	CCGG	1 cut(s)	77
BslFI	GGGAC	2 cut(s)	247, 740
BslI	CCNNNNNNNGG	1 cut(s)	414
BsmFI	GGGAC	2 cut(s)	247, 740
Bsp119I	TTCGAA	1 cut(s)	1045
Bsp1286I	GDGCHC	1 cut(s)	972
Bsp1407I	TGTACA	1 cut(s)	801
Bsp143I	GATC	3 cut(s)	46, 448, 650
BspACI	CCGC	3 cut(s)	115, 199, 752
BspDI	ATCGAT	1 cut(s)	812
BspLI	GGNNCC	3 cut(s)	404, 556, 756
BspOI	GCTAGC	1 cut(s)	752
BspQI	GCTCTTC	1 cut(s)	738
BspT104I	TTCGAA	1 cut(s)	1045
BsrBI	CCGCTC	1 cut(s)	201
BsrGI	TGTACA	1 cut(s)	801
BsrI	ACTGG	2 cut(s)	30, 846
BssECI	CCNNGG	2 cut(s)	264, 620
BssMI	GATC	3 cut(s)	46, 448, 650
BssT1I	CCWWGG	1 cut(s)	620
Bst2UI	CCWGG	3 cut(s)	215, 266, 552
Bst4CI	ACNGT	5 cut(s)	347, 467, 866, 894, 916
Bst6I	CTCTTC	1 cut(s)	738
BstAUI	TGTACA	1 cut(s)	801
BstBI	TTCGAA	1 cut(s)	1045
BstC8I	GCNNGC	3 cut(s)	113, 684, 750
BstDEI	CTNAG	2 cut(s)	64, 581
BstENI	CCTNNNNNAGG	1 cut(s)	412
BstF5I	GGATG	5 cut(s)	28, 199, 286, 546, 790
BstKTI	GATC	3 cut(s)	49, 451, 653
BstMBI	GATC	3 cut(s)	46, 448, 650
BstNI	CCWGG	3 cut(s)	215, 266, 552
BstNSI	RCATGY	1 cut(s)	482
BstSCI	CCNGG	4 cut(s)	75, 213, 264, 550
BstV1I	GCAGC	3 cut(s)	147, 396, 534
BstX2I	RGATCY	1 cut(s)	46
BstXI	CCANNNNNNTGG	1 cut(s)	565
BstYI	RGATCY	1 cut(s)	46
Bsu15I	ATCGAT	1 cut(s)	812
BsuTUI	ATCGAT	1 cut(s)	812
BtsCI	GGATG	5 cut(s)	28, 199, 286, 546, 790
BtsIMutI	CAGTG	2 cut(s)	39, 107
Cac8I	GCNNGC	3 cut(s)	113, 684, 750
CaiI	CAGNNNCTG	1 cut(s)	265
Cfr13I	GGNCC	1 cut(s)	754
ClaI	ATCGAT	1 cut(s)	812
CsiI	ACCWGGT	1 cut(s)	213
Csp6I	GTAC	2 cut(s)	802, 1067
CviAII	CATG	6 cut(s)	55, 204, 479, 634, 827, 938
CviJI	RGCY	9 cut(s)	138, 223, 387, 625, 682, 748, 858, 951, 970
CviKI_1	RGCY	9 cut(s)	138, 223, 387, 625, 682, 748, 858, 951, 970
CviQI	GTAC	2 cut(s)	802, 1067
DdeI	CTNAG	2 cut(s)	64, 581
DpnI	GATC	3 cut(s)	48, 450, 652
DpnII	GATC	3 cut(s)	46, 448, 650
Eam1104I	CTCTTC	1 cut(s)	738
EarI	CTCTTC	1 cut(s)	738
Ecl136II	GAGCTC	1 cut(s)	970
Eco130I	CCWWGG	1 cut(s)	620
Eco24I	GRGCYC	1 cut(s)	972
Eco32I	GATATC	1 cut(s)	487
Eco47I	GGWCC	1 cut(s)	754
Eco53kI	GAGCTC	1 cut(s)	970
Eco57I	CTGAAG	1 cut(s)	63
EcoICRI	GAGCTC	1 cut(s)	970
EcoNI	CCTNNNNNAGG	1 cut(s)	412
EcoRII	CCWGG	3 cut(s)	213, 264, 550
EcoRV	GATATC	1 cut(s)	487
EcoT14I	CCWWGG	1 cut(s)	620
EcoT22I	ATGCAT	1 cut(s)	790
EcoT38I	GRGCYC	1 cut(s)	972
ErhI	CCWWGG	1 cut(s)	620
FaeI	CATG	6 cut(s)	58, 207, 482, 637, 830, 941
FaqI	GGGAC	2 cut(s)	247, 740
FatI	CATG	6 cut(s)	54, 203, 478, 633, 826, 937
FauNDI	CATATG	1 cut(s)	398
Fnu4HI	GCNGC	3 cut(s)	136, 385, 548
FokI	GGATG	5 cut(s)	35, 206, 273, 553, 797
FriOI	GRGCYC	1 cut(s)	972
Fsp4HI	GCNGC	3 cut(s)	136, 385, 548
FspBI	CTAG	4 cut(s)	296, 314, 749, 977
GluI	GCNGC	3 cut(s)	136, 385, 548
GsaI	CCCAGC	1 cut(s)	366
GsuI	CTGGAG	1 cut(s)	287
HapII	CCGG	1 cut(s)	77
Hin1II	CATG	6 cut(s)	58, 207, 482, 637, 830, 941
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	1 cut(s)	544
Hpy166II	GTNNAC	2 cut(s)	463, 802
Hpy188I	TCNGA	4 cut(s)	164, 655, 994, 1038
Hpy188III	TCNNGA	4 cut(s)	309, 325, 424, 1019
Hpy8I	GTNNAC	2 cut(s)	463, 802
HpyCH4III	ACNGT	5 cut(s)	347, 467, 866, 894, 916
HpyCH4IV	ACGT	1 cut(s)	852
HpyCH4V	TGCA	4 cut(s)	111, 788, 886, 910
HpyF3I	CTNAG	2 cut(s)	64, 581
HpySE526I	ACGT	1 cut(s)	852
Hsp92II	CATG	6 cut(s)	58, 207, 482, 637, 830, 941
Kzo9I	GATC	3 cut(s)	46, 448, 650
LguI	GCTCTTC	1 cut(s)	738
Lsp1109I	GCAGC	3 cut(s)	147, 396, 534
LweI	GCATC	2 cut(s)	534, 775
MabI	ACCWGGT	1 cut(s)	213
MaeI	CTAG	4 cut(s)	296, 314, 749, 977
MaeII	ACGT	1 cut(s)	852
MaeIII	GTNAC	3 cut(s)	148, 227, 860
MalI	GATC	3 cut(s)	48, 450, 652
MbiI	CCGCTC	1 cut(s)	201
MboI	GATC	3 cut(s)	46, 448, 650
MboII	GAAGA	7 cut(s)	56, 422, 610, 746, 755, 981, 992
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	1 cut(s)	972
MluCI	AATT	8 cut(s)	186, 304, 419, 656, 737, 759, 1001, 1041
MlyI	GAGTC	1 cut(s)	66
MnlI	CCTC	7 cut(s)	13, 114, 288, 418, 501, 562, 936
Mph1103I	ATGCAT	1 cut(s)	790
MroXI	GAANNNNTTC	1 cut(s)	1051
MseI	TTAA	3 cut(s)	272, 900, 1061
MslI	CAYNNNNRTG	2 cut(s)	456, 563
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	4 cut(s)	77, 215, 266, 552
MvaI	CCWGG	3 cut(s)	215, 266, 552
NciI	CCSGG	1 cut(s)	77
NdeI	CATATG	1 cut(s)	398
NdeII	GATC	3 cut(s)	46, 448, 650
NheI	GCTAGC	1 cut(s)	748
NlaIII	CATG	6 cut(s)	58, 207, 482, 637, 830, 941
NlaIV	GGNNCC	3 cut(s)	404, 556, 756
NmuCI	GTSAC	1 cut(s)	860
NsiI	ATGCAT	1 cut(s)	790
NspI	RCATGY	1 cut(s)	482
NspV	TTCGAA	1 cut(s)	1045
PciSI	GCTCTTC	1 cut(s)	738
PdmI	GAANNNNTTC	1 cut(s)	1051
PfeI	GAWTC	9 cut(s)	130, 377, 427, 444, 504, 695, 809, 1022, 1047
PkrI	GCNGC	3 cut(s)	137, 386, 549
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
PsiI	TTATAA	1 cut(s)	1014
Psp124BI	GAGCTC	1 cut(s)	972
Psp6I	CCWGG	3 cut(s)	213, 264, 550
PspFI	CCCAGC	1 cut(s)	362
PspGI	CCWGG	3 cut(s)	213, 264, 550
PspN4I	GGNNCC	3 cut(s)	404, 556, 756
PspPI	GGNCC	1 cut(s)	754
PstNI	CAGNNNCTG	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	46
RsaI	GTAC	2 cut(s)	803, 1068
RsaNI	GTAC	2 cut(s)	802, 1067
RseI	CAYNNNNRTG	2 cut(s)	456, 563
SacI	GAGCTC	1 cut(s)	972
SapI	GCTCTTC	1 cut(s)	738
SaqAI	TTAA	3 cut(s)	272, 900, 1061
SatI	GCNGC	3 cut(s)	136, 385, 548
Sau3AI	GATC	3 cut(s)	46, 448, 650
Sau96I	GGNCC	1 cut(s)	754
SchI	GAGTC	1 cut(s)	66
ScrFI	CCNGG	4 cut(s)	77, 215, 266, 552
SduI	GDGCHC	1 cut(s)	972
SexAI	ACCWGGT	1 cut(s)	213
SfaNI	GCATC	2 cut(s)	534, 775
SfuI	TTCGAA	1 cut(s)	1045
SinI	GGWCC	1 cut(s)	754
SmiMI	CAYNNNNRTG	2 cut(s)	456, 563
SmlI	CTYRAG	2 cut(s)	139, 927
SmoI	CTYRAG	2 cut(s)	139, 927
Sse9I	AATT	8 cut(s)	186, 304, 419, 656, 737, 759, 1001, 1041
SsiI	CCGC	3 cut(s)	115, 199, 752
SspMI	CTAG	4 cut(s)	296, 314, 749, 977
SstI	GAGCTC	1 cut(s)	972
StyD4I	CCNGG	4 cut(s)	75, 213, 264, 550
StyI	CCWWGG	1 cut(s)	620
TaaI	ACNGT	5 cut(s)	347, 467, 866, 894, 916
TaiI	ACGT	1 cut(s)	855
TaqI	TCGA	6 cut(s)	447, 649, 795, 812, 870, 1045
TasI	AATT	8 cut(s)	186, 304, 419, 656, 737, 759, 1001, 1041
TatI	WGTACW	1 cut(s)	801
TfiI	GAWTC	9 cut(s)	130, 377, 427, 444, 504, 695, 809, 1022, 1047
Tru1I	TTAA	3 cut(s)	272, 900, 1061
Tru9I	TTAA	3 cut(s)	272, 900, 1061
TscAI	CASTG	2 cut(s)	46, 107
TseFI	GTSAC	1 cut(s)	860
TseI	GCWGC	3 cut(s)	135, 384, 547
Tsp45I	GTSAC	1 cut(s)	860
TspDTI	ATGAA	4 cut(s)	275, 650, 747, 815
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	2 cut(s)	46, 107
VpaK11BI	GGWCC	1 cut(s)	754
XagI	CCTNNNNNAGG	1 cut(s)	412
XapI	RAATTY	4 cut(s)	419, 656, 737, 1041
XceI	RCATGY	1 cut(s)	482
XcmI	CCANNNNNNNNNTGG	1 cut(s)	697
XmnI	GAANNNNTTC	1 cut(s)	1051
XspI	CTAG	4 cut(s)	296, 314, 749, 977
Zsp2I	ATGCAT	1 cut(s)	790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.