Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005478

Physical Location & Seq

Genomic Coordinates Forward (+)

6815628 .. 6817136

Gene Structure 1509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0087400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTTGAAAGTAAGTTTCTTAATGTTGCTTGCCATGGCTTTCGCAGCAACTAGTGCTCATGCTCGCTTAGATCTATTTGGCCAGCTGCTCACCTCCAAGAACCAACCAAATCCCAATTATGAATGCCAGAAAATTCCATTTCTACTATGCGGCCGTGTCTGTGACGCTTGCATTTGCGATAGGCGTGCTCCAGAGTTTGCAGAGTGCACTTGCGGACAGTGGAAACCATATGCAGAACTCCAAAAATCTGACGAAGCACAAGTGCAGGTGATAGGATTAGAAAAATCTTCTATTAAAGCTAAGTCTTCGGGCGCCATTCCATATACAGAATGCATCAAAGTCTGCAAAATTTGTGCTTGTACACTAATCTGGCCCCCTGAGGCAAATTGGTGCATTGATTGCCGCGAGACTGAAGCTGAAGGCAGAGCCCTCCCCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052866 GO:0071704 GO:0106019

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

146

Amino Acids

16.18

Weight (kDa)

6.55

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37440 AT2G37440 AT2G37440
fragaria_vesca	FvH4_6g14390 FvH4_6g14390 FvH4_6g14390 FvH4_6g14390 FvH4_6g14390 FvH4_6g14390
malus_domestica	MD04G1120100.v1.1 MD12G1137500.v1.1
prunus_persica	Prupe.6G249400_v2.0.a1 Prupe.6G249400_v2.0.a1 Prupe.6G249400_v2.0.a1 Prupe.6G249400_v2.0.a1
pyrus_communis	pycom04g10930 pycom12g13150
rosa_chinensis	RchiOBHm_Chr3g0467461
rosa_laevigata	RLG00000024503
rosa_multiflora	Rmu_sc0001601.1_g000003
rosa_roxburghii	Rroxscaffold_6G00413660
rosa_rugosa	Rorug03G0087200 Rorug03G0087300 Rorug03G0087400
rosa_samantha	Rh3AG135600 Rh3BG157200 Rh3CG157100 Rh3DG158000
rosa_wichuraiana	Rw3G012880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	256
Acc36I	ACCTGC	1 cut(s)	256
AccB1I	GGYRCC	1 cut(s)	311
AccII	CGCG	1 cut(s)	405
AciI	CCGC	3 cut(s)	150, 213, 403
AcoI	YGGCCR	2 cut(s)	79, 151
AcsI	RAATTY	2 cut(s)	132, 348
AcuI	CTGAAG	2 cut(s)	432, 438
AcyI	GRCGYC	1 cut(s)	312
AfaI	GTAC	1 cut(s)	361
AgsI	TTSAA	1 cut(s)	7
AhlI	ACTAGT	1 cut(s)	50
AluBI	AGCT	3 cut(s)	85, 299, 416
AluI	AGCT	3 cut(s)	85, 299, 416
Alw21I	GWGCWC	3 cut(s)	58, 190, 209
Alw26I	GTCTC	1 cut(s)	401
Alw44I	GTGCAC	1 cut(s)	205
AoxI	GGCC	3 cut(s)	79, 151, 371
ApaLI	GTGCAC	1 cut(s)	205
ApeKI	GCWGC	2 cut(s)	44, 85
ApoI	RAATTY	2 cut(s)	132, 348
AspLEI	GCGC	1 cut(s)	314
AspS9I	GGNCC	1 cut(s)	372
AsuHPI	GGTGA	2 cut(s)	82, 280
AxyI	CCTNAGG	1 cut(s)	378
BaeGI	GKGCMC	1 cut(s)	209
BalI	TGGCCA	1 cut(s)	81
BanI	GGYRCC	1 cut(s)	311
BanII	GRGCYC	1 cut(s)	430
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	3 cut(s)	58, 190, 209
BbvI	GCAGC	2 cut(s)	56, 72
BceAI	ACGGC	1 cut(s)	138
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BcoDI	GTCTC	1 cut(s)	401
BcuI	ACTAGT	1 cut(s)	50
BfaI	CTAG	2 cut(s)	51, 439
BfoI	RGCGCY	1 cut(s)	315
BfuAI	ACCTGC	1 cut(s)	256
BglII	AGATCT	1 cut(s)	70
BisI	GCNGC	4 cut(s)	45, 86, 151, 403
BlsI	GCNGC	4 cut(s)	46, 87, 152, 404
BmgT120I	GGNCC	1 cut(s)	372
BmiI	GGNNCC	2 cut(s)	313, 374
BmsI	GCATC	1 cut(s)	342
BpiI	GAAGAC	1 cut(s)	297
BpmI	CTGGAG	1 cut(s)	174
BsaHI	GRCGYC	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	33
Bse21I	CCTNAGG	1 cut(s)	378
BseDI	CCNNGG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	369
BseSI	GKGCMC	1 cut(s)	209
BseX3I	CGGCCG	1 cut(s)	151
BseXI	GCAGC	2 cut(s)	56, 72
BsgI	GTGCAG	1 cut(s)	284
Bsh1236I	CGCG	1 cut(s)	405
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	3 cut(s)	81, 153, 373
BshNI	GGYRCC	1 cut(s)	311
BsiEI	CGRYCG	1 cut(s)	154
BsiHKAI	GWGCWC	3 cut(s)	58, 190, 209
BsmAI	GTCTC	1 cut(s)	401
BsmI	GAATGC	2 cut(s)	128, 335
BsnI	GGCC	3 cut(s)	81, 153, 373
Bsp1286I	GDGCHC	4 cut(s)	58, 190, 209, 430
Bsp1407I	TGTACA	1 cut(s)	359
Bsp143I	GATC	1 cut(s)	70
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	3 cut(s)	150, 213, 403
BspANI	GGCC	3 cut(s)	81, 153, 373
BspCNI	CTCAG	1 cut(s)	370
BspFNI	CGCG	1 cut(s)	405
BspLI	GGNNCC	2 cut(s)	313, 374
BspMI	ACCTGC	1 cut(s)	256
BspT107I	GGYRCC	1 cut(s)	311
BsrGI	TGTACA	1 cut(s)	359
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	1 cut(s)	70
BssNI	GRCGYC	1 cut(s)	312
BssT1I	CCWWGG	1 cut(s)	33
Bst4CI	ACNGT	1 cut(s)	219
BstACI	GRCGYC	1 cut(s)	312
BstAPI	GCANNNNNTGC	2 cut(s)	53, 399
BstAUI	TGTACA	1 cut(s)	359
BstC8I	GCNNGC	5 cut(s)	30, 64, 83, 169, 186
BstDEI	CTNAG	3 cut(s)	67, 300, 378
BstDSI	CCRYGG	1 cut(s)	33
BstFNI	CGCG	1 cut(s)	405
BstH2I	RGCGCY	1 cut(s)	315
BstHHI	GCGC	1 cut(s)	314
BstKTI	GATC	1 cut(s)	73
BstMAI	GTCTC	1 cut(s)	401
BstMBI	GATC	1 cut(s)	70
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 53, 399
BstSLI	GKGCMC	1 cut(s)	209
BstUI	CGCG	1 cut(s)	405
BstV1I	GCAGC	2 cut(s)	56, 72
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BstZI	CGGCCG	1 cut(s)	151
Bsu36I	CCTNAGG	1 cut(s)	378
BsuRI	GGCC	3 cut(s)	81, 153, 373
BtgI	CCRYGG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	224
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	5 cut(s)	30, 64, 83, 169, 186
CfoI	GCGC	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	372
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	360
CviAII	CATG	2 cut(s)	34, 59
CviJI	RGCY	8 cut(s)	38, 81, 85, 153, 299, 373, 416, 428
CviKI_1	RGCY	8 cut(s)	38, 81, 85, 153, 299, 373, 416, 428
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	3 cut(s)	67, 300, 378
DinI	GGCGCC	1 cut(s)	313
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
EaeI	YGGCCR	2 cut(s)	79, 151
EagI	CGGCCG	1 cut(s)	151
EclXI	CGGCCG	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	430
Eco52I	CGGCCG	1 cut(s)	151
Eco57I	CTGAAG	2 cut(s)	432, 438
Eco81I	CCTNAGG	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	33
EcoT22I	ATGCAT	1 cut(s)	335
EcoT38I	GRGCYC	1 cut(s)	430
EgeI	GGCGCC	1 cut(s)	313
EheI	GGCGCC	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	2 cut(s)	37, 62
FaiI	YATR	8 cut(s)	35, 60, 120, 148, 229, 231, 322, 324
FatI	CATG	2 cut(s)	33, 58
FauNDI	CATATG	1 cut(s)	229
Fnu4HI	GCNGC	4 cut(s)	45, 86, 151, 403
FriOI	GRGCYC	1 cut(s)	430
Fsp4HI	GCNGC	4 cut(s)	45, 86, 151, 403
FspBI	CTAG	2 cut(s)	51, 439
GlaI	GCGC	1 cut(s)	313
GluI	GCNGC	4 cut(s)	45, 86, 151, 403
GsuI	CTGGAG	1 cut(s)	174
HaeII	RGCGCY	1 cut(s)	315
HaeIII	GGCC	3 cut(s)	81, 153, 373
HgaI	GACGC	1 cut(s)	173
HhaI	GCGC	1 cut(s)	314
Hin1I	GRCGYC	1 cut(s)	312
Hin1II	CATG	2 cut(s)	37, 62
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HphI	GGTGA	2 cut(s)	82, 280
Hpy166II	GTNNAC	2 cut(s)	207, 362
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	1 cut(s)	191
Hpy8I	GTNNAC	2 cut(s)	207, 362
HpyAV	CCTTC	1 cut(s)	413
HpyCH4III	ACNGT	1 cut(s)	219
HpyCH4V	TGCA	8 cut(s)	171, 200, 207, 233, 265, 333, 345, 393
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 53, 399
HpyF3I	CTNAG	3 cut(s)	67, 300, 378
Hsp92I	GRCGYC	1 cut(s)	312
Hsp92II	CATG	2 cut(s)	37, 62
HspAI	GCGC	1 cut(s)	312
KasI	GGCGCC	1 cut(s)	311
Kzo9I	GATC	1 cut(s)	70
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	6 cut(s)	95, 140, 204, 251, 355, 390
Lsp1109I	GCAGC	2 cut(s)	56, 72
LweI	GCATC	1 cut(s)	342
MaeI	CTAG	2 cut(s)	51, 439
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	2 cut(s)	279, 297
MflI	RGATCY	1 cut(s)	70
MhlI	GDGCHC	4 cut(s)	58, 190, 209, 430
MlsI	TGGCCA	1 cut(s)	81
MluCI	AATT	4 cut(s)	115, 132, 348, 385
MluNI	TGGCCA	1 cut(s)	81
Mly113I	GGCGCC	1 cut(s)	312
MnlI	CCTC	3 cut(s)	103, 373, 440
Mox20I	TGGCCA	1 cut(s)	81
Mph1103I	ATGCAT	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	81
MseI	TTAA	2 cut(s)	20, 294
Msp20I	TGGCCA	1 cut(s)	81
MspA1I	CMGCKG	1 cut(s)	85
Mva1269I	GAATGC	2 cut(s)	128, 335
MvnI	CGCG	1 cut(s)	405
MwoI	GCNNNNNNNGC	3 cut(s)	44, 53, 399
NarI	GGCGCC	1 cut(s)	312
NcoI	CCATGG	1 cut(s)	33
NdeI	CATATG	1 cut(s)	229
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	2 cut(s)	37, 62
NlaIV	GGNNCC	2 cut(s)	313, 374
NmuCI	GTSAC	1 cut(s)	161
NsiI	ATGCAT	1 cut(s)	335
PaqCI	CACCTGC	1 cut(s)	256
PctI	GAATGC	2 cut(s)	128, 335
PkrI	GCNGC	4 cut(s)	46, 87, 152, 404
PluTI	GGCGCC	1 cut(s)	315
PspN4I	GGNNCC	2 cut(s)	313, 374
PspPI	GGNCC	1 cut(s)	372
PsuI	RGATCY	1 cut(s)	70
PvuII	CAGCTG	1 cut(s)	85
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
SaqAI	TTAA	2 cut(s)	20, 294
SatI	GCNGC	4 cut(s)	45, 86, 151, 403
Sau3AI	GATC	1 cut(s)	70
Sau96I	GGNCC	1 cut(s)	372
SduI	GDGCHC	4 cut(s)	58, 190, 209, 430
SetI	ASST	5 cut(s)	87, 95, 270, 301, 418
SfaNI	GCATC	1 cut(s)	342
SfoI	GGCGCC	1 cut(s)	313
SpeI	ACTAGT	1 cut(s)	50
Sse9I	AATT	4 cut(s)	115, 132, 348, 385
SsiI	CCGC	3 cut(s)	150, 213, 403
SspDI	GGCGCC	1 cut(s)	311
SspMI	CTAG	2 cut(s)	51, 439
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	219
TasI	AATT	4 cut(s)	115, 132, 348, 385
TatI	WGTACW	1 cut(s)	359
TauI	GCSGC	2 cut(s)	153, 405
Tru1I	TTAA	2 cut(s)	20, 294
Tru9I	TTAA	2 cut(s)	20, 294
TscAI	CASTG	1 cut(s)	224
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	2 cut(s)	44, 85
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	135
TspRI	CASTG	1 cut(s)	224
VneI	GTGCAC	1 cut(s)	205
XapI	RAATTY	2 cut(s)	132, 348
XspI	CTAG	2 cut(s)	51, 439
Zsp2I	ATGCAT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.