Rorug03G0099900

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0015958
Physical Location & Seq
Reverse (-)
7834684 .. 7835150
467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0099900.1

Sequence Viewer

Length: 354 bp
ATGGCTAGCTCTAACGCTATGAAGCTTACTTTGGTTGCTCTCTTGTGCGTGGTGGTTGCTTTGCCCATAGCCCAAGCCATCACATGCGGCCAAGTGGCGAGCAACATTGCACCTTGCGCAACCTACGTGAAGAGTGGCGGCGTTGTCCCTGCCGCTTGCTGCAACGGAATTAGAAACCTTAACGCCATGGCCAAGACCACCCCTGACCGCCAGGCCGCCTGCAATTGCCTCAAACAGGTTACCGGTGGCATCAAAGGACTCAACCCTAACCTTGCAGCTGGGCTTCCCGGCAAGTGTGGAGTTAGCGTTCCCTACAAGATCAGCACCTCCACCAACTGCGCCACCGTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

117

Amino Acids

11.71

Weight (kDa)

9.34

Isoelectric Point (pI)

28.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tryp_alpha_amyl PF00234 29 - 113 5.2e-15 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015958)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53380
fragaria_vesca FvH4_6g15560
malus_domestica MD04G1102000.v1.1 MD12G1121700.v1.1
prunus_persica Prupe.6G239500_v2.0.a1
pyrus_communis pycom04g09730 pycom12g12070
rosa_chinensis RchiOBHm_Chr3g0469121
rosa_laevigata RLG00000024371
rosa_multiflora Rmu_sc0000302.1_g000014 Rmu_sc0007933.1_g000020
rosa_roxburghii Rroxscaffold_6G00412190
rosa_rugosa Rorug03G0099900
rosa_samantha Rh3AG148900
rosa_wichuraiana Rw3G014050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 118
AciI CCGC 5 cut(s) 87, 138, 153, 208, 216
AcoI YGGCCR 2 cut(s) 88, 189
AfiI CCNNNNNNNGG 1 cut(s) 235
AgeI ACCGGT 1 cut(s) 242
AjnI CCWGG 1 cut(s) 210
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
AloI GAACNNNNNNTCC 2 cut(s) 291, 323
AluBI AGCT 3 cut(s) 9, 25, 278
AluI AGCT 3 cut(s) 9, 25, 278
AoxI GGCC 3 cut(s) 88, 189, 213
ApeKI GCWGC 2 cut(s) 159, 275
AsiGI ACCGGT 1 cut(s) 242
AspLEI GCGC 2 cut(s) 119, 341
AsuC2I CCSGG 1 cut(s) 288
AsuNHI GCTAGC 1 cut(s) 5
BalI TGGCCA 1 cut(s) 191
BbvI GCAGC 2 cut(s) 146, 287
BccI CCATC 1 cut(s) 86
BciT130I CCWGG 1 cut(s) 212
BcnI CCSGG 1 cut(s) 288
BfaI CTAG 1 cut(s) 6
BisI GCNGC 6 cut(s) 88, 139, 153, 160, 216, 276
BlsI GCNGC 6 cut(s) 89, 140, 154, 161, 217, 277
Bme1390I CCNGG 2 cut(s) 212, 288
BmrFI CCNGG 2 cut(s) 212, 288
BmsI GCATC 1 cut(s) 258
BmtI GCTAGC 1 cut(s) 9
BpuMI CCSGG 1 cut(s) 288
BsaAI YACGTR 1 cut(s) 127
BsaJI CCNNGG 1 cut(s) 186
BsaWI WCCGGW 1 cut(s) 242
BsaXI ACNNNNNCTCC 2 cut(s) 291, 321
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse118I RCCGGY 1 cut(s) 242
Bse3DI GCAATG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMI GCAATG 1 cut(s) 105
BseXI GCAGC 2 cut(s) 146, 287
BseYI CCCAGC 1 cut(s) 278
BshFI GGCC 3 cut(s) 90, 191, 215
BshTI ACCGGT 1 cut(s) 242
BsiSI CCGG 2 cut(s) 243, 288
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 235
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 3 cut(s) 90, 191, 215
Bsp143I GATC 1 cut(s) 318
Bsp19I CCATGG 1 cut(s) 186
BspACI CCGC 5 cut(s) 87, 138, 153, 208, 216
BspANI GGCC 3 cut(s) 90, 191, 215
BspOI GCTAGC 1 cut(s) 9
BsrDI GCAATG 1 cut(s) 105
BsrFI RCCGGY 1 cut(s) 242
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 1 cut(s) 318
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 1 cut(s) 346
Bst6I CTCTTC 1 cut(s) 125
BstBAI YACGTR 1 cut(s) 127
BstC8I GCNNGC 4 cut(s) 7, 100, 157, 220
BstDSI CCRYGG 1 cut(s) 186
BstEII GGTNACC 1 cut(s) 238
BstENI CCTNNNNNAGG 1 cut(s) 233
BstHHI GCGC 2 cut(s) 119, 341
BstKTI GATC 1 cut(s) 321
BstMBI GATC 1 cut(s) 318
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstNI CCWGG 1 cut(s) 212
BstNSI RCATGY 1 cut(s) 87
BstPI GGTNACC 1 cut(s) 238
BstSCI CCNGG 2 cut(s) 210, 286
BstV1I GCAGC 2 cut(s) 146, 287
BsuRI GGCC 3 cut(s) 90, 191, 215
BtgI CCRYGG 1 cut(s) 186
Cac8I GCNNGC 4 cut(s) 7, 100, 157, 220
CfoI GCGC 2 cut(s) 119, 341
Cfr10I RCCGGY 1 cut(s) 242
CspAI ACCGGT 1 cut(s) 242
CviAII CATG 2 cut(s) 84, 187
DpnI GATC 1 cut(s) 320
DpnII GATC 1 cut(s) 318
EaeI YGGCCR 2 cut(s) 88, 189
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco130I CCWWGG 1 cut(s) 186
Eco91I GGTNACC 1 cut(s) 238
EcoNI CCTNNNNNAGG 1 cut(s) 233
EcoO65I GGTNACC 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 2 cut(s) 87, 190
FaiI YATR 4 cut(s) 20, 68, 85, 188
FaqI GGGAC 1 cut(s) 131
FatI CATG 2 cut(s) 83, 186
Fnu4HI GCNGC 6 cut(s) 88, 139, 153, 160, 216, 276
Fsp4HI GCNGC 6 cut(s) 88, 139, 153, 160, 216, 276
FspBI CTAG 1 cut(s) 6
FspI TGCGCA 1 cut(s) 118
GlaI GCGC 2 cut(s) 118, 340
GluI GCNGC 6 cut(s) 88, 139, 153, 160, 216, 276
GsaI CCCAGC 1 cut(s) 282
HaeIII GGCC 3 cut(s) 90, 191, 215
HapII CCGG 2 cut(s) 243, 288
HhaI GCGC 2 cut(s) 119, 341
Hin1II CATG 2 cut(s) 87, 190
Hin6I GCGC 2 cut(s) 117, 339
HinP1I GCGC 2 cut(s) 117, 339
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 1 cut(s) 258
HpaII CCGG 2 cut(s) 243, 288
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 4 cut(s) 110, 162, 222, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 2 cut(s) 87, 190
HspAI GCGC 2 cut(s) 117, 339
Kzo9I GATC 1 cut(s) 318
LpnPI CCDG 9 cut(s) 162, 197, 216, 221, 224, 232, 256, 264, 301
Lsp1109I GCAGC 2 cut(s) 146, 287
LweI GCATC 1 cut(s) 258
MaeI CTAG 1 cut(s) 6
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 238
MalI GATC 1 cut(s) 320
MboI GATC 1 cut(s) 318
MboII GAAGA 1 cut(s) 142
MfeI CAATTG 1 cut(s) 223
MlsI TGGCCA 1 cut(s) 191
MluCI AATT 2 cut(s) 168, 223
MluNI TGGCCA 1 cut(s) 191
MlyI GAGTC 1 cut(s) 252
MnlI CCTC 2 cut(s) 239, 337
Mox20I TGGCCA 1 cut(s) 191
MscI TGGCCA 1 cut(s) 191
MseI TTAA 1 cut(s) 180
Msp20I TGGCCA 1 cut(s) 191
MspA1I CMGCKG 1 cut(s) 278
MspI CCGG 2 cut(s) 243, 288
MspR9I CCNGG 2 cut(s) 212, 288
MunI CAATTG 1 cut(s) 223
MvaI CCWGG 1 cut(s) 212
MwoI GCNNNNNNNGC 1 cut(s) 116
NciI CCSGG 1 cut(s) 288
NcoI CCATGG 1 cut(s) 186
NdeII GATC 1 cut(s) 318
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 2 cut(s) 87, 190
NsbI TGCGCA 1 cut(s) 118
NspI RCATGY 1 cut(s) 87
PinAI ACCGGT 1 cut(s) 242
PkrI GCNGC 6 cut(s) 89, 140, 154, 161, 217, 277
PleI GAGTC 1 cut(s) 252
PpsI GAGTC 1 cut(s) 252
Ppu21I YACGTR 1 cut(s) 127
Psp6I CCWGG 1 cut(s) 210
PspEI GGTNACC 1 cut(s) 238
PspFI CCCAGC 1 cut(s) 278
PspGI CCWGG 1 cut(s) 210
PvuII CAGCTG 1 cut(s) 278
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 6 cut(s) 88, 139, 153, 160, 216, 276
Sau3AI GATC 1 cut(s) 318
SchI GAGTC 1 cut(s) 252
ScrFI CCNGG 2 cut(s) 212, 288
SfaNI GCATC 1 cut(s) 258
Sse9I AATT 2 cut(s) 168, 223
SsiI CCGC 5 cut(s) 87, 138, 153, 208, 216
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 2 cut(s) 210, 286
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 346
TaiI ACGT 1 cut(s) 129
TasI AATT 2 cut(s) 168, 223
TauI GCSGC 4 cut(s) 90, 141, 155, 218
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TseI GCWGC 2 cut(s) 159, 275
TspDTI ATGAA 1 cut(s) 35
TspGWI ACGGA 1 cut(s) 180
XagI CCTNNNNNAGG 1 cut(s) 233
XceI RCATGY 1 cut(s) 87
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.