Rorug03G0107100
MYB Family

TSL-kinase interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0005307
Physical Location & Seq
Forward (+)
8604888 .. 8605725
838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0107100.1

Sequence Viewer

Length: 720 bp
ATGCTTAAAGCTAGTGTTGGAGAGGTAAAGTTGCCGCGGTTTCTTCACTATGACCGTATGATTAGCAAGTTTGTCTTATCATCGTGCCCCTTCTCATCATCGGATTGGATTGTCGTGCTTTACGCGGTGGACATCGAAGGCAACATCTTGATTTGTGATATCCAAGACCTTGAGCAACCAAAAACGAGCATTCTTCTATCAAAGGGGATACCAATGGAACCTATATACGGGGGTAGTCGTCAAAGAATCTACATAGTAGAATCAGCAGGAGTCTTGTTGGTGGTTTTGCACACCTTTGCAAAGAGTTCATCAATTAAAACCATTAAGTTAAGGGTATTCGAAGTGCCGTTTGATAAAACTGAAGAGTGGGAGTGGTCGAATTTGGAGGTTAAGAACTTGGGGAATAAAACTCTCTTTTTGGGATGTAAAAATTCTTCATACTCTATTGAAGCCTCGGAGTATTACTTTGGATGCAAACCCAATTGCATATACTTCACCATTGAATGGCTTGACTGGGTGTTGCTCAACTCTCTTCCTGAAATAAACGTGGATGATGTTAATATGGAATACGAAAAGGCGGAGCTACTTTTAAACGGGAACGCGAGTGTTTTTATTTTTAATATGGAAGATGAGAAGGTGGAGCAACTTTTAGCACCTACGGATTTAGGTTTAGGGGAAGGAGAAACTCTATGGTTACAACCACAGCCACCAAGCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

239

Amino Acids

27.15

Weight (kDa)

4.63

Isoelectric Point (pI)

45.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 40 - 182 1e-21 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 504
AccII CGCG 3 cut(s) 37, 125, 602
AciI CCGC 4 cut(s) 35, 37, 125, 578
AcsI RAATTY 2 cut(s) 379, 430
AcuI CTGAAG 1 cut(s) 381
AfiI CCNNNNNNNGG 2 cut(s) 227, 504
AgsI TTSAA 2 cut(s) 449, 503
AluBI AGCT 3 cut(s) 11, 583, 714
AluI AGCT 3 cut(s) 11, 583, 714
ApoI RAATTY 2 cut(s) 379, 430
AsuHPI GGTGA 1 cut(s) 487
AsuII TTCGAA 1 cut(s) 339
BaeGI GKGCMC 1 cut(s) 89
BarI GAAGNNNNNNTAC 2 cut(s) 418, 450
BceAI ACGGC 1 cut(s) 331
BciVI GTATCC 1 cut(s) 201
BfaI CTAG 1 cut(s) 12
BfuI GTATCC 1 cut(s) 201
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 219
BmrI ACTGGG 1 cut(s) 523
BmsI GCATC 1 cut(s) 461
BmuI ACTGGG 1 cut(s) 523
Bpu14I TTCGAA 1 cut(s) 339
BpuEI CTTGAG 1 cut(s) 191
BsaJI CCNNGG 2 cut(s) 35, 453
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 504
Bse1I ACTGG 1 cut(s) 518
BseDI CCNNGG 2 cut(s) 35, 453
BseGI GGATG 3 cut(s) 428, 476, 556
BseLI CCNNNNNNNGG 2 cut(s) 227, 504
BseNI ACTGG 1 cut(s) 518
BseSI GKGCMC 1 cut(s) 89
Bsh1236I CGCG 3 cut(s) 37, 125, 602
BslI CCNNNNNNNGG 2 cut(s) 227, 504
BsmI GAATGC 1 cut(s) 189
Bsp119I TTCGAA 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 89
BspACI CCGC 4 cut(s) 35, 37, 125, 578
BspFNI CGCG 3 cut(s) 37, 125, 602
BspLI GGNNCC 1 cut(s) 219
BspT104I TTCGAA 1 cut(s) 339
BsrI ACTGG 1 cut(s) 518
BssECI CCNNGG 2 cut(s) 35, 453
Bst4CI ACNGT 1 cut(s) 56
Bst6I CTCTTC 2 cut(s) 357, 537
BstBI TTCGAA 1 cut(s) 339
BstDSI CCRYGG 1 cut(s) 35
BstF5I GGATG 3 cut(s) 428, 476, 556
BstFNI CGCG 3 cut(s) 37, 125, 602
BstSLI GKGCMC 1 cut(s) 89
BstUI CGCG 3 cut(s) 37, 125, 602
BsuI GTATCC 1 cut(s) 201
BtgI CCRYGG 1 cut(s) 35
BtsCI GGATG 3 cut(s) 428, 476, 556
Cfr42I CCGCGG 1 cut(s) 38
CspCI CAANNNNNGTGG 1 cut(s) 696
CviJI RGCY 6 cut(s) 11, 452, 508, 583, 706, 714
CviKI_1 RGCY 6 cut(s) 11, 452, 508, 583, 706, 714
DraI TTTAAA 1 cut(s) 591
Eam1104I CTCTTC 2 cut(s) 357, 537
EarI CTCTTC 2 cut(s) 357, 537
EciI GGCGGA 1 cut(s) 593
Eco32I GATATC 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 381
EcoRV GATATC 1 cut(s) 160
FalI AAGNNNNNCTT 2 cut(s) 59, 91
Fnu4HI GCNGC 1 cut(s) 35
FokI GGATG 3 cut(s) 435, 483, 563
Fsp4HI GCNGC 1 cut(s) 35
FspBI CTAG 1 cut(s) 12
GluI GCNGC 1 cut(s) 35
HindIII AAGCTT 1 cut(s) 712
HinfI GANTC 3 cut(s) 246, 260, 270
HphI GGTGA 1 cut(s) 487
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 2 cut(s) 103, 457
Hpy188III TCNNGA 2 cut(s) 148, 536
Hpy8I GTNNAC 1 cut(s) 130
HpyAV CCTTC 4 cut(s) 100, 131, 628, 671
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 4 cut(s) 289, 299, 474, 486
HpySE526I ACGT 1 cut(s) 546
KspI CCGCGG 1 cut(s) 38
LmnI GCTCC 2 cut(s) 580, 640
LpnPI CCDG 3 cut(s) 252, 499, 549
LweI GCATC 1 cut(s) 461
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 1 cut(s) 693
MboII GAAGA 6 cut(s) 35, 185, 374, 426, 524, 638
MfeI CAATTG 1 cut(s) 481
MhlI GDGCHC 1 cut(s) 89
MluCI AATT 4 cut(s) 312, 379, 430, 481
MlyI GAGTC 1 cut(s) 279
MnlI CCTC 3 cut(s) 16, 379, 463
MseI TTAA 8 cut(s) 6, 315, 324, 329, 390, 558, 590, 618
MspA1I CMGCKG 1 cut(s) 37
MunI CAATTG 1 cut(s) 481
Mva1269I GAATGC 1 cut(s) 189
MvnI CGCG 3 cut(s) 37, 125, 602
NlaIV GGNNCC 1 cut(s) 219
NspV TTCGAA 1 cut(s) 339
PctI GAATGC 1 cut(s) 189
PfeI GAWTC 2 cut(s) 246, 260
PflMI CCANNNNNTGG 1 cut(s) 504
PkrI GCNGC 1 cut(s) 36
PleI GAGTC 1 cut(s) 278
PpsI GAGTC 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 219
SacII CCGCGG 1 cut(s) 38
SaqAI TTAA 8 cut(s) 6, 315, 324, 329, 390, 558, 590, 618
SatI GCNGC 1 cut(s) 35
SchI GAGTC 1 cut(s) 279
SduI GDGCHC 1 cut(s) 89
SfaNI GCATC 1 cut(s) 461
Sfr303I CCGCGG 1 cut(s) 38
SfuI TTCGAA 1 cut(s) 339
SgrBI CCGCGG 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 4 cut(s) 312, 379, 430, 481
SsiI CCGC 4 cut(s) 35, 37, 125, 578
SspMI CTAG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 56
TaiI ACGT 1 cut(s) 549
TaqI TCGA 3 cut(s) 135, 339, 377
TasI AATT 4 cut(s) 312, 379, 430, 481
TauI GCSGC 1 cut(s) 37
TfiI GAWTC 2 cut(s) 246, 260
Tru1I TTAA 8 cut(s) 6, 315, 324, 329, 390, 558, 590, 618
Tru9I TTAA 8 cut(s) 6, 315, 324, 329, 390, 558, 590, 618
TspDTI ATGAA 2 cut(s) 297, 426
TspGWI ACGGA 1 cut(s) 674
Van91I CCANNNNNTGG 1 cut(s) 504
XapI RAATTY 2 cut(s) 379, 430
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.