Rh3DG194700
MYB Family

TSL-kinase interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0005307
Physical Location & Seq
Forward (+)
17468944 .. 17475718
6775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG194700.1

Sequence Viewer

Length: 1716 bp
ATGGACAGTGAAGCACACCCGCGTCAGGAAAGTATTTTGGTTCAGGAGGGAGATCCTGCTTTAGCCCCGTCCACCTCAAATCATGTTGCCGTGCAGCAGCCTGTTAAAAAACCAACACGGCAATGGGCTGCTTGGACACATCAAGAAGAGCAAAGTTTTTTTGCTGCACTACGACAAGTTGGCAAGAATTTTGAGAAAATCACTTGTCGTGTTCAAAGTAAAAACAAGGATCAGGTCAGGCATTATTACTATCGTCTTGTGAGGCGTATGAACAAGCTGCTGGGTCCAGGATTATATTTGGATTCCAGAAATTCTAAAGATACTAATGCTGCTATGCTTAGATGGTGGTCTTTGCTGGAAAAGTATAGCTGCAAAGCATCAAAGCTTCACTTGAAGCCCCGACGGTTTAAGATTTTTATGGAAGCATTGGAACACCAACTCCTTAAAGACCGGAAGAAGACTGTCAGGAAACGGCCTTCTCAGGGGGAAAACTGCCCTCCTGAGGCTCCCAGCACTGTCTCAAATCAGAGTAGACCATCAGAACATGATCGTCCAGTTAAACTTGTTCTCGTTGACAGTCACAATATTCAGAAATCAGGACCTGGAAAAGCATCATTAAAGCGCAGTGGAAGCATAGGTGTTAATCGTGGCAACAAAGGAGATGCAAGTACCATGAAACCTGCTAGACAACGACGTAAACCAGCAGCATATAAAAAGTGGGAGAAGGCTGCAATTGCTGGGGTTTCTTTGGTTGCAGATGCTGCTGAGCACTTGGAGCGAACAATCGATAAAGATGTTGGACAAGACAAAAGCAGTGCAGAGAAAAATAGTGCTGTCCCTGTTGGAAATTTTCTGCCTCCTATGCCCAATTTTCCACAAAATATTTATGCAGAGAACAACATAAACAACTCTGTGAAGCTTAAACTCCAGTTGTTCCCAATTGATGATAGTACTAGAAAAGCCTTGGAAATGGATAAACATAATCCTCACCTGGAGCTTACGCTCCCTACTCGGAAAAAGATATCCTCAGTTATGGAACACCTAAATCGCAAATGGGGAAGTTCAAGTGTGGCATCAGGAGAGCTAATGCTTTTCCCTAATAGTATCCAGCAGGATTGTCCAACAGGCTATCTGAGGTGGACACAAGACTCAAATGTCAGTGCAGGAGATGTATATGCTATGATTGGAAGCCCTCCAGTTTTCCGATTAAGGTATGGTTGGTTCTCCACTACTGAGCTTGGATCTGTTTCATCGCAAGCACCTGTAGCATCTTGCACGATTCCAGTTGAGCATGATATGAATGTGGAGAAGATGAAGGATCCTGTATTGGAATCAGCATCTATTTCTCCACTATCAGCTAGTAATCAATGTGTAGATATCCACAAAGACCTCTTACCCTCAGTGACAAAAAGTCATTCTCTTGCTCAAACTTCAGCTGGTGAGCCCAACCAGAAGAATAACCTTGAGGGAGACCCTACAGAAAGTGCATCATGGCATGAAAAGGTTGCAGGTGATGAGGGTATCTTAAGACATCAAGGAGAAGTGGTAAATTATCCTCTTTCCCATGTTTTAAATGTTAATACGGCTCATAGGCATACATATTTTCAGCTAATTCACTTATACACAGAAGTGGAACTTCTTATTGTGATTTTTTATGCTAGAAATGCTTTATTTGGATTTTTCATGTTAACCTTTTATCTTATATGTTTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

571

Amino Acids

64.25

Weight (kDa)

9.37

Isoelectric Point (pI)

49.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 44 - 86 1.9e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1499
AasI GACNNNNNNGTC 1 cut(s) 1154
Acc36I ACCTGC 2 cut(s) 688, 1499
AccI GTMKAC 1 cut(s) 532
AccII CGCG 1 cut(s) 22
AciI CCGC 1 cut(s) 20
AclWI GGATC 5 cut(s) 47, 237, 1249, 1313, 1326
AcsI RAATTY 3 cut(s) 187, 310, 847
AcuI CTGAAG 1 cut(s) 1416
AfaI GTAC 2 cut(s) 670, 952
AfiI CCNNNNNNNGG 3 cut(s) 25, 482, 502
AflII CTTAAG 1 cut(s) 1525
AgsI TTSAA 3 cut(s) 215, 394, 1065
AhdI GACNNNNNGTC 1 cut(s) 1410
AjnI CCWGG 3 cut(s) 286, 601, 990
AleI CACNNNNGTG 1 cut(s) 1628
AloI GAACNNNNNNTCC 2 cut(s) 423, 455
Alw21I GWGCWC 1 cut(s) 771
Alw26I GTCTC 2 cut(s) 523, 1464
AlwI GGATC 5 cut(s) 47, 237, 1249, 1313, 1326
AlwNI CAGNNNCTG 2 cut(s) 602, 761
AoxI GGCC 1 cut(s) 473
ApoI RAATTY 3 cut(s) 187, 310, 847
AspLEI GCGC 1 cut(s) 624
AspS9I GGNCC 2 cut(s) 284, 599
AsuHPI GGTGA 3 cut(s) 980, 1451, 1523
AvaII GGWCC 2 cut(s) 284, 599
AxyI CCTNAGG 1 cut(s) 501
BamHI GGATCC 1 cut(s) 1318
BanII GRGCYC 1 cut(s) 1446
BbsI GAAGAC 1 cut(s) 464
Bbv12I GWGCWC 1 cut(s) 771
BccI CCATC 2 cut(s) 336, 544
BceAI ACGGC 4 cut(s) 74, 134, 488, 1599
BciT130I CCWGG 3 cut(s) 288, 603, 992
BciVI GTATCC 1 cut(s) 1115
BcoDI GTCTC 2 cut(s) 523, 1464
BfaI CTAG 4 cut(s) 684, 954, 1359, 1659
BfmI CTRYAG 2 cut(s) 1263, 1476
BfrI CTTAAG 1 cut(s) 1525
BfuAI ACCTGC 2 cut(s) 688, 1499
BfuI GTATCC 1 cut(s) 1115
BlpI GCTNAGC 1 cut(s) 765
BmcAI AGTACT 1 cut(s) 952
Bme1390I CCNGG 3 cut(s) 288, 603, 992
Bme18I GGWCC 2 cut(s) 284, 599
BmeRI GACNNNNNGTC 1 cut(s) 1410
BmgT120I GGNCC 2 cut(s) 284, 599
BmiI GGNNCC 3 cut(s) 285, 507, 1320
BmrFI CCNGG 3 cut(s) 288, 603, 992
BmsI GCATC 8 cut(s) 386, 620, 652, 748, 1082, 1277, 1346, 1496
BpiI GAAGAC 1 cut(s) 464
BpmI CTGGAG 3 cut(s) 911, 1013, 1179
Bpu1102I GCTNAGC 1 cut(s) 765
BpuEI CTTGAG 1 cut(s) 1484
Bsa29I ATCGAT 1 cut(s) 786
BsaI GGTCTC 1 cut(s) 1464
BsaJI CCNNGG 1 cut(s) 963
BsaWI WCCGGW 1 cut(s) 450
BsaXI ACNNNNNCTCC 4 cut(s) 423, 453, 1530, 1560
Bsc4I CCNNNNNNNGG 3 cut(s) 25, 482, 502
Bse1I ACTGG 4 cut(s) 554, 928, 1196, 1283
Bse21I CCTNAGG 1 cut(s) 501
Bse3DI GCAATG 1 cut(s) 128
BseBI CCWGG 3 cut(s) 288, 603, 992
BseCI ATCGAT 1 cut(s) 786
BseDI CCNNGG 1 cut(s) 963
BseLI CCNNNNNNNGG 3 cut(s) 25, 482, 502
BseMI GCAATG 1 cut(s) 128
BseMII CTCAG 7 cut(s) 492, 494, 756, 1041, 1124, 1224, 1413
BseNI ACTGG 4 cut(s) 554, 928, 1196, 1283
BseYI CCCAGC 3 cut(s) 280, 509, 737
BsgI GTGCAG 4 cut(s) 113, 150, 837, 1182
Bsh1236I CGCG 1 cut(s) 22
BshFI GGCC 1 cut(s) 475
BshVI ATCGAT 1 cut(s) 786
BsiHKAI GWGCWC 1 cut(s) 771
BsiSI CCGG 1 cut(s) 451
BslFI GGGAC 1 cut(s) 821
BslI CCNNNNNNNGG 3 cut(s) 25, 482, 502
BsmAI GTCTC 2 cut(s) 523, 1464
BsmFI GGGAC 1 cut(s) 821
BsnI GGCC 1 cut(s) 475
Bso31I GGTCTC 1 cut(s) 1464
Bsp1286I GDGCHC 2 cut(s) 771, 1446
Bsp143I GATC 5 cut(s) 52, 229, 547, 1241, 1318
Bsp1720I GCTNAGC 1 cut(s) 765
BspACI CCGC 1 cut(s) 20
BspANI GGCC 1 cut(s) 475
BspCNI CTCAG 7 cut(s) 493, 493, 757, 1040, 1125, 1225, 1412
BspDI ATCGAT 1 cut(s) 786
BspFNI CGCG 1 cut(s) 22
BspLI GGNNCC 3 cut(s) 285, 507, 1320
BspMI ACCTGC 2 cut(s) 688, 1499
BspPI GGATC 5 cut(s) 47, 237, 1249, 1313, 1326
BspQI GCTCTTC 1 cut(s) 141
BspTI CTTAAG 1 cut(s) 1525
BspTNI GGTCTC 1 cut(s) 1464
BsrDI GCAATG 1 cut(s) 128
BsrI ACTGG 4 cut(s) 554, 928, 1196, 1283
BssECI CCNNGG 1 cut(s) 963
BssMI GATC 5 cut(s) 52, 229, 547, 1241, 1318
BssT1I CCWWGG 1 cut(s) 963
Bst2UI CCWGG 3 cut(s) 288, 603, 992
Bst4CI ACNGT 5 cut(s) 8, 405, 463, 517, 578
Bst6I CTCTTC 1 cut(s) 141
BstAFI CTTAAG 1 cut(s) 1525
BstAPI GCANNNNNTGC 1 cut(s) 761
BstC8I GCNNGC 1 cut(s) 1257
BstDEI CTNAG 8 cut(s) 338, 480, 501, 765, 1027, 1133, 1233, 1399
BstFNI CGCG 1 cut(s) 22
BstHHI GCGC 1 cut(s) 624
BstKTI GATC 5 cut(s) 55, 232, 550, 1244, 1321
BstMAI GTCTC 2 cut(s) 523, 1464
BstMBI GATC 5 cut(s) 52, 229, 547, 1241, 1318
BstMWI GCNNNNNNNGC 7 cut(s) 630, 734, 761, 775, 862, 1265, 1664
BstNI CCWGG 3 cut(s) 288, 603, 992
BstSCI CCNGG 3 cut(s) 286, 601, 990
BstSFI CTRYAG 2 cut(s) 1263, 1476
BstUI CGCG 1 cut(s) 22
BstV2I GAAGAC 1 cut(s) 464
BstX2I RGATCY 3 cut(s) 52, 1241, 1318
BstYI RGATCY 3 cut(s) 52, 1241, 1318
Bsu15I ATCGAT 1 cut(s) 786
Bsu36I CCTNAGG 1 cut(s) 501
BsuI GTATCC 1 cut(s) 1115
BsuRI GGCC 1 cut(s) 475
BsuTUI ATCGAT 1 cut(s) 786
BtgZI GCGATG 1 cut(s) 1236
BtsI GCAGTG 2 cut(s) 631, 820
BtsIMutI CAGTG 6 cut(s) 13, 513, 631, 820, 1165, 1407
BveI ACCTGC 2 cut(s) 688, 1499
Cac8I GCNNGC 1 cut(s) 1257
CaiI CAGNNNCTG 2 cut(s) 602, 761
CfoI GCGC 1 cut(s) 624
Cfr13I GGNCC 2 cut(s) 284, 599
ClaI ATCGAT 1 cut(s) 786
CseI GACGC 1 cut(s) 11
Csp6I GTAC 2 cut(s) 669, 951
CviAII CATG 8 cut(s) 83, 545, 673, 1292, 1491, 1496, 1565, 1684
CviQI GTAC 2 cut(s) 669, 951
DdeI CTNAG 8 cut(s) 338, 480, 501, 765, 1027, 1133, 1233, 1399
DpnI GATC 5 cut(s) 54, 231, 549, 1243, 1320
DpnII GATC 5 cut(s) 52, 229, 547, 1241, 1318
DraI TTTAAA 1 cut(s) 1572
DrdI GACNNNNNNGTC 1 cut(s) 1154
DriI GACNNNNNGTC 1 cut(s) 1410
DseDI GACNNNNNNGTC 1 cut(s) 1154
Eam1104I CTCTTC 1 cut(s) 141
Eam1105I GACNNNNNGTC 1 cut(s) 1410
EarI CTCTTC 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 963
Eco24I GRGCYC 1 cut(s) 1446
Eco31I GGTCTC 1 cut(s) 1464
Eco32I GATATC 2 cut(s) 1023, 1378
Eco47I GGWCC 2 cut(s) 284, 599
Eco57I CTGAAG 1 cut(s) 1416
Eco81I CCTNAGG 1 cut(s) 501
EcoO109I RGGNCCY 1 cut(s) 599
EcoRII CCWGG 3 cut(s) 286, 601, 990
EcoRV GATATC 2 cut(s) 1023, 1378
EcoT14I CCWWGG 1 cut(s) 963
EcoT38I GRGCYC 1 cut(s) 1446
ErhI CCWWGG 1 cut(s) 963
FaeI CATG 8 cut(s) 86, 548, 676, 1295, 1494, 1499, 1568, 1687
FalI AAGNNNNNCTT 4 cut(s) 374, 406, 1620, 1652
FaqI GGGAC 1 cut(s) 821
FatI CATG 8 cut(s) 82, 544, 672, 1291, 1490, 1495, 1564, 1683
FauI CCCGC 1 cut(s) 27
FblI GTMKAC 1 cut(s) 532
FriOI GRGCYC 1 cut(s) 1446
FspBI CTAG 4 cut(s) 684, 954, 1359, 1659
GlaI GCGC 1 cut(s) 623
GsaI CCCAGC 3 cut(s) 284, 513, 741
GsuI CTGGAG 3 cut(s) 911, 1013, 1179
HaeIII GGCC 1 cut(s) 475
HapII CCGG 1 cut(s) 451
HgaI GACGC 1 cut(s) 11
HhaI GCGC 1 cut(s) 624
Hin1II CATG 8 cut(s) 86, 548, 676, 1295, 1494, 1499, 1568, 1687
Hin6I GCGC 1 cut(s) 622
HinP1I GCGC 1 cut(s) 622
HincII GTYRAC 2 cut(s) 574, 1689
HindII GTYRAC 2 cut(s) 574, 1689
HindIII AAGCTT 2 cut(s) 383, 917
HinfI GANTC 4 cut(s) 302, 1148, 1279, 1331
HpaI GTTAAC 1 cut(s) 1689
HpaII CCGG 1 cut(s) 451
HphI GGTGA 3 cut(s) 980, 1451, 1523
Hpy166II GTNNAC 6 cut(s) 72, 533, 574, 698, 1140, 1689
Hpy188I TCNGA 7 cut(s) 528, 541, 591, 1014, 1134, 1205, 1715
Hpy188III TCNNGA 8 cut(s) 26, 44, 143, 306, 466, 500, 597, 1077
Hpy8I GTNNAC 6 cut(s) 72, 533, 574, 698, 1140, 1689
Hpy99I CGWCG 2 cut(s) 405, 696
HpyAV CCTTC 3 cut(s) 486, 718, 1309
HpyCH4III ACNGT 5 cut(s) 8, 405, 463, 517, 578
HpyCH4IV ACGT 1 cut(s) 694
HpyF10VI GCNNNNNNNGC 7 cut(s) 630, 734, 761, 775, 862, 1265, 1664
HpyF3I CTNAG 8 cut(s) 338, 480, 501, 765, 1027, 1133, 1233, 1399
HpySE526I ACGT 1 cut(s) 694
Hsp92II CATG 8 cut(s) 86, 548, 676, 1295, 1494, 1499, 1568, 1687
HspAI GCGC 1 cut(s) 622
KspAI GTTAAC 1 cut(s) 1689
Kzo9I GATC 5 cut(s) 52, 229, 547, 1241, 1318
LguI GCTCTTC 1 cut(s) 141
LmnI GCTCC 4 cut(s) 511, 775, 994, 1008
LweI GCATC 8 cut(s) 386, 620, 652, 748, 1082, 1277, 1346, 1496
MaeI CTAG 4 cut(s) 684, 954, 1359, 1659
MaeII ACGT 1 cut(s) 694
MaeIII GTNAC 2 cut(s) 578, 1402
MalI GATC 5 cut(s) 54, 231, 549, 1243, 1320
MboI GATC 5 cut(s) 52, 229, 547, 1241, 1318
MboII GAAGA 5 cut(s) 158, 466, 469, 1321, 1465
MfeI CAATTG 2 cut(s) 732, 939
MflI RGATCY 3 cut(s) 52, 1241, 1318
MhlI GDGCHC 2 cut(s) 771, 1446
MluCI AATT 8 cut(s) 187, 310, 732, 847, 868, 939, 1549, 1611
MlyI GAGTC 1 cut(s) 1142
MmeI TCCRAC 3 cut(s) 778, 823, 1145
MslI CAYNNNNRTG 2 cut(s) 121, 1628
MspA1I CMGCKG 1 cut(s) 1436
MspCI CTTAAG 1 cut(s) 1525
MspI CCGG 1 cut(s) 451
MspR9I CCNGG 3 cut(s) 288, 603, 992
MunI CAATTG 2 cut(s) 732, 939
MvaI CCWGG 3 cut(s) 288, 603, 992
MvnI CGCG 1 cut(s) 22
MwoI GCNNNNNNNGC 7 cut(s) 630, 734, 761, 775, 862, 1265, 1664
NdeII GATC 5 cut(s) 52, 229, 547, 1241, 1318
NlaIII CATG 8 cut(s) 86, 548, 676, 1295, 1494, 1499, 1568, 1687
NlaIV GGNNCC 3 cut(s) 285, 507, 1320
NmuCI GTSAC 2 cut(s) 578, 1402
OliI CACNNNNGTG 1 cut(s) 1628
PaqCI CACCTGC 1 cut(s) 1499
PciSI GCTCTTC 1 cut(s) 141
PfeI GAWTC 3 cut(s) 302, 1279, 1331
PfoI TCCNGGA 1 cut(s) 286
PleI GAGTC 1 cut(s) 1142
PpsI GAGTC 1 cut(s) 1142
PpuMI RGGWCCY 1 cut(s) 599
Psp5II RGGWCCY 1 cut(s) 599
Psp6I CCWGG 3 cut(s) 286, 601, 990
PspFI CCCAGC 3 cut(s) 280, 509, 737
PspGI CCWGG 3 cut(s) 286, 601, 990
PspN4I GGNNCC 3 cut(s) 285, 507, 1320
PspPI GGNCC 2 cut(s) 284, 599
PspPPI RGGWCCY 1 cut(s) 599
PsrI GAACNNNNNNTAC 2 cut(s) 1205, 1237
PstNI CAGNNNCTG 2 cut(s) 602, 761
PsuI RGATCY 3 cut(s) 52, 1241, 1318
PvuII CAGCTG 1 cut(s) 1436
RsaI GTAC 2 cut(s) 670, 952
RsaNI GTAC 2 cut(s) 669, 951
RseI CAYNNNNRTG 2 cut(s) 121, 1628
SapI GCTCTTC 1 cut(s) 141
Sau3AI GATC 5 cut(s) 52, 229, 547, 1241, 1318
Sau96I GGNCC 2 cut(s) 284, 599
ScaI AGTACT 1 cut(s) 952
SchI GAGTC 1 cut(s) 1142
ScrFI CCNGG 3 cut(s) 288, 603, 992
SduI GDGCHC 2 cut(s) 771, 1446
SfaNI GCATC 8 cut(s) 386, 620, 652, 748, 1082, 1277, 1346, 1496
SfcI CTRYAG 2 cut(s) 1263, 1476
SinI GGWCC 2 cut(s) 284, 599
SmiMI CAYNNNNRTG 2 cut(s) 121, 1628
SmlI CTYRAG 2 cut(s) 1463, 1525
SmoI CTYRAG 2 cut(s) 1463, 1525
Sse9I AATT 8 cut(s) 187, 310, 732, 847, 868, 939, 1549, 1611
SsiI CCGC 1 cut(s) 20
SspI AATATT 2 cut(s) 586, 883
SspMI CTAG 4 cut(s) 684, 954, 1359, 1659
StyD4I CCNGG 3 cut(s) 286, 601, 990
StyI CCWWGG 1 cut(s) 963
TaaI ACNGT 5 cut(s) 8, 405, 463, 517, 578
TaiI ACGT 1 cut(s) 697
TaqI TCGA 1 cut(s) 786
TasI AATT 8 cut(s) 187, 310, 732, 847, 868, 939, 1549, 1611
TatI WGTACW 1 cut(s) 950
TfiI GAWTC 3 cut(s) 302, 1279, 1331
TscAI CASTG 6 cut(s) 13, 520, 631, 820, 1165, 1407
TseFI GTSAC 2 cut(s) 578, 1402
Tsp45I GTSAC 2 cut(s) 578, 1402
TspDTI ATGAA 7 cut(s) 284, 689, 1239, 1313, 1328, 1512, 1672
TspRI CASTG 6 cut(s) 13, 520, 631, 820, 1165, 1407
Vha464I CTTAAG 1 cut(s) 1525
VpaK11BI GGWCC 2 cut(s) 284, 599
XapI RAATTY 3 cut(s) 187, 310, 847
XcmI CCANNNNNNNNNTGG 1 cut(s) 120
XmiI GTMKAC 1 cut(s) 532
XspI CTAG 4 cut(s) 684, 954, 1359, 1659
ZrmI AGTACT 1 cut(s) 952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.