Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009540

Physical Location & Seq

Genomic Coordinates Reverse (-)

18106564 .. 18109625

Gene Structure 3062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0204100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCTGCTTTCTCTCTCTCCTCCTCCCCTCCTCCTCTCTCCCTAATTCCTCGCACCTCCTCCTCCCCCCATGGCAGCAGACGCCTCTCCCTCTCCAAATCCCCCTCCTCCTCGTCGCGTCCCAGAGTCTCCTGTTCCTCTTCTTCTGAGAAATCCTCCCCCGGCGGCGATAACATTACTCCCAGCTCTTTTTGTATCATAGAGGGGCCGGAGACGGTGCAGGACTTTGTGCAGATGCAGCTGCAGGAAATTCAGGACAACATAAGGAGCAGGCGGAGCAAGATTTTTCTGCTCATGGAAGAGCTGAGGAGATTGCGGGTGCAACACCGGATAAAGATGGCGAAGGATTTCTATGAGAGTGGTGAGGAAGAGTCGAACGAGATGCCTGACATTCCATCATCCATCCCTTTTCTCCCTTCTGTGACAGCAAAGACTTTGAAGCAACTCTACCTCACAAGCGCAACATTTATATCTGGGATAATTGTATTTGGGGGCCTTATTGCACCGACGCTGGAACTTAAATTAGGCATAGGAGGTACCTCATATGAAGATTTCATTCGCAGCATGCATTTGCCCATGCAATTAAGTCAGGTTGATCCCATTGTGGCGTCCTTTTCGGGTGGGGCAGTGGGTGTCATTTCAGCATTGATGTTGATTGAAGCTAACAATGTTGAGCAACAAGAGAAGAAAAGGTGCAAGTATTGCCATGGAACTGGGTATTTGGCCTGTGCTCGATGTTCTGCAAGTGGTGTATGCTTGAGCATCAATCCTATATCAGTATCTAATGCATCTGACCGCCCTTTGCGAGTGCCCACAACTCAGAGGTGTTTAAATTGCTCTGGTGCTGGAAAGGTAATGTGCCCAACATGTCTGTGCACCGGGATGATGATGGCGAGCGAGCATGACCCACGGATAGATCCATTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

309

Amino Acids

33.51

Weight (kDa)

8.24

Isoelectric Point (pI)

71.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10310 AT3G10310
fragaria_vesca	FvH4_6g24140 FvH4_6g24140 FvH4_6g24140 FvH4_6g24140 FvH4_6g24140 FvH4_6g24140 FvH4_6g24140
malus_domestica	MD12G1076000.v1.1 MD14G1074400.v1.1
prunus_persica	Prupe.7G055800_v2.0.a1
pyrus_communis	pycom14g06340
rosa_chinensis	RchiOBHm_Chr3g0483041
rosa_laevigata	RLG00000023304
rosa_multiflora	Rmu_sc0000441.1_g000128
rosa_roxburghii	Rroxscaffold_6G00398680
rosa_rugosa	Rorug03G0204100
rosa_samantha	Rh3AG251900 Rh3CG286100 Rh3DG281700
rosa_wichuraiana	Rw3G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	536
AccB1I	GGYRCC	1 cut(s)	536
AccII	CGCG	1 cut(s)	118
AciI	CCGC	4 cut(s)	165, 274, 316, 796
AclWI	GGATC	2 cut(s)	590, 911
AcsI	RAATTY	1 cut(s)	249
AcyI	GRCGYC	2 cut(s)	82, 608
AfaI	GTAC	1 cut(s)	538
AflIII	ACRYGT	1 cut(s)	866
AgsI	TTSAA	2 cut(s)	439, 659
AluBI	AGCT	4 cut(s)	186, 241, 304, 662
AluI	AGCT	4 cut(s)	186, 241, 304, 662
Alw21I	GWGCWC	2 cut(s)	733, 878
Alw26I	GTCTC	2 cut(s)	133, 206
Alw44I	GTGCAC	1 cut(s)	874
AlwI	GGATC	2 cut(s)	590, 911
AoxI	GGCC	3 cut(s)	206, 493, 723
ApaLI	GTGCAC	1 cut(s)	874
ApeKI	GCWGC	5 cut(s)	5, 75, 238, 241, 561
ApoI	RAATTY	1 cut(s)	249
Asp700I	GAANNNNTTC	1 cut(s)	347
Asp718I	GGTACC	1 cut(s)	536
AspLEI	GCGC	1 cut(s)	461
AspS9I	GGNCC	2 cut(s)	206, 493
AsuC2I	CCSGG	2 cut(s)	162, 880
AsuHPI	GGTGA	1 cut(s)	374
BaeGI	GKGCMC	3 cut(s)	813, 863, 878
BanI	GGYRCC	1 cut(s)	536
BarI	GAAGNNNNNNTAC	2 cut(s)	431, 463
Bbv12I	GWGCWC	2 cut(s)	733, 878
BbvCI	CCTCAGC	1 cut(s)	305
BbvI	GCAGC	4 cut(s)	87, 228, 250, 573
BccI	CCATC	4 cut(s)	331, 403, 410, 883
BcgI	CGANNNNNNTGC	2 cut(s)	364, 398
BcnI	CCSGG	2 cut(s)	162, 880
BcoDI	GTCTC	2 cut(s)	133, 206
BfmI	CTRYAG	1 cut(s)	242
BisI	GCNGC	6 cut(s)	6, 76, 166, 239, 242, 562
BlsI	GCNGC	6 cut(s)	7, 77, 167, 240, 243, 563
Bme1390I	CCNGG	2 cut(s)	162, 880
BmgT120I	GGNCC	2 cut(s)	206, 493
BmiI	GGNNCC	3 cut(s)	207, 494, 538
BmrFI	CCNGG	2 cut(s)	162, 880
BmrI	ACTGGG	1 cut(s)	723
BmsI	GCATC	4 cut(s)	225, 372, 771, 797
BmuI	ACTGGG	1 cut(s)	723
BplI	GAGNNNNNCTC	2 cut(s)	140, 172
Bpu10I	CCTNAGC	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	778
BpuMI	CCSGG	2 cut(s)	162, 880
BsaHI	GRCGYC	2 cut(s)	82, 608
BsaJI	CCNNGG	4 cut(s)	70, 160, 706, 908
BsaWI	WCCGGW	1 cut(s)	327
Bse1I	ACTGG	1 cut(s)	718
BseDI	CCNNGG	4 cut(s)	70, 160, 706, 908
BseGI	GGATG	3 cut(s)	398, 402, 888
BseMII	CTCAG	3 cut(s)	138, 296, 833
BseNI	ACTGG	1 cut(s)	718
BseRI	GAGGAG	9 cut(s)	10, 13, 21, 24, 49, 52, 97, 100, 322
BseSI	GKGCMC	3 cut(s)	813, 863, 878
BseXI	GCAGC	4 cut(s)	87, 228, 250, 573
BseYI	CCCAGC	1 cut(s)	182
BsgI	GTGCAG	2 cut(s)	239, 251
Bsh1236I	CGCG	1 cut(s)	118
BshFI	GGCC	3 cut(s)	208, 495, 725
BshNI	GGYRCC	1 cut(s)	536
BsiHKAI	GWGCWC	2 cut(s)	733, 878
BsiSI	CCGG	4 cut(s)	162, 209, 328, 879
BslFI	GGGAC	1 cut(s)	105
BsmAI	GTCTC	2 cut(s)	133, 206
BsmBI	CGTCTC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	105
BsnI	GGCC	3 cut(s)	208, 495, 725
Bsp1286I	GDGCHC	4 cut(s)	733, 813, 863, 878
Bsp143I	GATC	2 cut(s)	595, 916
Bsp19I	CCATGG	2 cut(s)	70, 706
BspACI	CCGC	4 cut(s)	165, 274, 316, 796
BspANI	GGCC	3 cut(s)	208, 495, 725
BspCNI	CTCAG	3 cut(s)	139, 297, 832
BspFNI	CGCG	1 cut(s)	118
BspLI	GGNNCC	3 cut(s)	207, 494, 538
BspMAI	CTGCAG	1 cut(s)	246
BspPI	GGATC	2 cut(s)	590, 911
BspQI	GCTCTTC	1 cut(s)	294
BspT107I	GGYRCC	1 cut(s)	536
BsrI	ACTGG	1 cut(s)	718
BssECI	CCNNGG	4 cut(s)	70, 160, 706, 908
BssMI	GATC	2 cut(s)	595, 916
BssNI	GRCGYC	2 cut(s)	82, 608
BssT1I	CCWWGG	2 cut(s)	70, 706
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	3 cut(s)	145, 294, 363
BstACI	GRCGYC	2 cut(s)	82, 608
BstAPI	GCANNNNNTGC	1 cut(s)	702
BstC8I	GCNNGC	4 cut(s)	272, 566, 895, 899
BstDEI	CTNAG	3 cut(s)	147, 305, 819
BstDSI	CCRYGG	3 cut(s)	70, 706, 908
BstF5I	GGATG	3 cut(s)	398, 402, 888
BstFNI	CGCG	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	461
BstKTI	GATC	2 cut(s)	598, 919
BstMAI	GTCTC	2 cut(s)	133, 206
BstMBI	GATC	2 cut(s)	595, 916
BstMWI	GCNNNNNNNGC	4 cut(s)	81, 238, 276, 702
BstNSI	RCATGY	2 cut(s)	568, 870
BstSCI	CCNGG	2 cut(s)	160, 878
BstSFI	CTRYAG	1 cut(s)	242
BstSLI	GKGCMC	3 cut(s)	813, 863, 878
BstUI	CGCG	1 cut(s)	118
BstV1I	GCAGC	4 cut(s)	87, 228, 250, 573
BstX2I	RGATCY	1 cut(s)	916
BstXI	CCANNNNNNTGG	1 cut(s)	713
BstYI	RGATCY	1 cut(s)	916
BsuRI	GGCC	3 cut(s)	208, 495, 725
BtgI	CCRYGG	3 cut(s)	70, 706, 908
BtsCI	GGATG	3 cut(s)	398, 402, 888
BtsI	GCAGTG	1 cut(s)	633
BtsIMutI	CAGTG	1 cut(s)	633
Cac8I	GCNNGC	4 cut(s)	272, 566, 895, 899
CfoI	GCGC	1 cut(s)	461
Cfr13I	GGNCC	2 cut(s)	206, 493
CseI	GACGC	4 cut(s)	90, 107, 517, 597
Csp6I	GTAC	1 cut(s)	537
CviAII	CATG	7 cut(s)	71, 295, 565, 577, 707, 867, 902
CviJI	RGCY	8 cut(s)	5, 186, 208, 241, 304, 495, 662, 725
CviKI_1	RGCY	8 cut(s)	5, 186, 208, 241, 304, 495, 662, 725
CviQI	GTAC	1 cut(s)	537
DdeI	CTNAG	3 cut(s)	147, 305, 819
DpnI	GATC	2 cut(s)	597, 918
DpnII	GATC	2 cut(s)	595, 916
DraI	TTTAAA	1 cut(s)	831
Eam1104I	CTCTTC	3 cut(s)	145, 294, 363
EarI	CTCTTC	3 cut(s)	145, 294, 363
EciI	GGCGGA	1 cut(s)	289
Eco130I	CCWWGG	2 cut(s)	70, 706
EcoO109I	RGGNCCY	1 cut(s)	493
EcoT14I	CCWWGG	2 cut(s)	70, 706
EcoT22I	ATGCAT	2 cut(s)	570, 790
ErhI	CCWWGG	2 cut(s)	70, 706
Esp3I	CGTCTC	1 cut(s)	206
FaeI	CATG	7 cut(s)	74, 298, 568, 580, 710, 870, 905
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	7 cut(s)	70, 294, 564, 576, 706, 866, 901
FauI	CCCGC	1 cut(s)	309
FauNDI	CATATG	1 cut(s)	544
Fnu4HI	GCNGC	6 cut(s)	6, 76, 166, 239, 242, 562
FokI	GGATG	3 cut(s)	385, 389, 895
Fsp4HI	GCNGC	6 cut(s)	6, 76, 166, 239, 242, 562
GlaI	GCGC	1 cut(s)	460
GluI	GCNGC	6 cut(s)	6, 76, 166, 239, 242, 562
GsaI	CCCAGC	1 cut(s)	186
HaeIII	GGCC	3 cut(s)	208, 495, 725
HapII	CCGG	4 cut(s)	162, 209, 328, 879
HgaI	GACGC	4 cut(s)	90, 107, 517, 597
HhaI	GCGC	1 cut(s)	461
Hin1I	GRCGYC	2 cut(s)	82, 608
Hin1II	CATG	7 cut(s)	74, 298, 568, 580, 710, 870, 905
Hin6I	GCGC	1 cut(s)	459
HinP1I	GCGC	1 cut(s)	459
HinfI	GANTC	2 cut(s)	126, 371
HpaII	CCGG	4 cut(s)	162, 209, 328, 879
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	1 cut(s)	876
Hpy188I	TCNGA	3 cut(s)	148, 793, 822
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	1 cut(s)	876
Hpy99I	CGWCG	2 cut(s)	118, 511
HpyAV	CCTTC	2 cut(s)	337, 426
HpyCH4III	ACNGT	1 cut(s)	217
HpyF10VI	GCNNNNNNNGC	4 cut(s)	81, 238, 276, 702
HpyF3I	CTNAG	3 cut(s)	147, 305, 819
Hsp92I	GRCGYC	2 cut(s)	82, 608
Hsp92II	CATG	7 cut(s)	74, 298, 568, 580, 710, 870, 905
HspAI	GCGC	1 cut(s)	459
KpnI	GGTACC	1 cut(s)	540
Kzo9I	GATC	2 cut(s)	595, 916
LguI	GCTCTTC	1 cut(s)	294
LmnI	GCTCC	2 cut(s)	267, 276
Lsp1109I	GCAGC	4 cut(s)	87, 228, 250, 573
LweI	GCATC	4 cut(s)	225, 372, 771, 797
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	2 cut(s)	597, 918
MboI	GATC	2 cut(s)	595, 916
MboII	GAAGA	6 cut(s)	132, 135, 311, 380, 560, 697
MflI	RGATCY	1 cut(s)	916
MhlI	GDGCHC	4 cut(s)	733, 813, 863, 878
MluCI	AATT	6 cut(s)	45, 249, 480, 521, 581, 832
MlyI	GAGTC	2 cut(s)	135, 380
Mph1103I	ATGCAT	2 cut(s)	570, 790
MroXI	GAANNNNTTC	1 cut(s)	347
MseI	TTAA	3 cut(s)	519, 584, 830
MslI	CAYNNNNRTG	2 cut(s)	871, 881
MspA1I	CMGCKG	1 cut(s)	241
MspI	CCGG	4 cut(s)	162, 209, 328, 879
MspR9I	CCNGG	2 cut(s)	162, 880
MvnI	CGCG	1 cut(s)	118
MwoI	GCNNNNNNNGC	4 cut(s)	81, 238, 276, 702
NciI	CCSGG	2 cut(s)	162, 880
NcoI	CCATGG	2 cut(s)	70, 706
NdeI	CATATG	1 cut(s)	544
NdeII	GATC	2 cut(s)	595, 916
NlaIII	CATG	7 cut(s)	74, 298, 568, 580, 710, 870, 905
NlaIV	GGNNCC	3 cut(s)	207, 494, 538
NmuCI	GTSAC	1 cut(s)	421
NsiI	ATGCAT	2 cut(s)	570, 790
NspI	RCATGY	2 cut(s)	568, 870
PaeI	GCATGC	1 cut(s)	568
PciI	ACATGT	1 cut(s)	866
PciSI	GCTCTTC	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	347
PkrI	GCNGC	6 cut(s)	7, 77, 167, 240, 243, 563
PleI	GAGTC	2 cut(s)	134, 379
PpsI	GAGTC	2 cut(s)	134, 379
PscI	ACATGT	1 cut(s)	866
PspFI	CCCAGC	1 cut(s)	182
PspN4I	GGNNCC	3 cut(s)	207, 494, 538
PspPI	GGNCC	2 cut(s)	206, 493
PstI	CTGCAG	1 cut(s)	246
PsuI	RGATCY	1 cut(s)	916
PvuII	CAGCTG	1 cut(s)	241
RsaI	GTAC	1 cut(s)	538
RsaNI	GTAC	1 cut(s)	537
RseI	CAYNNNNRTG	2 cut(s)	871, 881
SapI	GCTCTTC	1 cut(s)	294
SaqAI	TTAA	3 cut(s)	519, 584, 830
SatI	GCNGC	6 cut(s)	6, 76, 166, 239, 242, 562
Sau3AI	GATC	2 cut(s)	595, 916
Sau96I	GGNCC	2 cut(s)	206, 493
SchI	GAGTC	2 cut(s)	135, 380
ScrFI	CCNGG	2 cut(s)	162, 880
SduI	GDGCHC	4 cut(s)	733, 813, 863, 878
SfaNI	GCATC	4 cut(s)	225, 372, 771, 797
SfcI	CTRYAG	1 cut(s)	242
SmiMI	CAYNNNNRTG	2 cut(s)	871, 881
SmlI	CTYRAG	1 cut(s)	757
SmoI	CTYRAG	1 cut(s)	757
SphI	GCATGC	1 cut(s)	568
Sse9I	AATT	6 cut(s)	45, 249, 480, 521, 581, 832
SsiI	CCGC	4 cut(s)	165, 274, 316, 796
StyD4I	CCNGG	2 cut(s)	160, 878
StyI	CCWWGG	2 cut(s)	70, 706
TaaI	ACNGT	1 cut(s)	217
TaqI	TCGA	2 cut(s)	374, 733
TasI	AATT	6 cut(s)	45, 249, 480, 521, 581, 832
TauI	GCSGC	1 cut(s)	168
Tru1I	TTAA	3 cut(s)	519, 584, 830
Tru9I	TTAA	3 cut(s)	519, 584, 830
TscAI	CASTG	1 cut(s)	633
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	5 cut(s)	5, 75, 238, 241, 561
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	2 cut(s)	544, 561
TspGWI	ACGGA	1 cut(s)	925
TspRI	CASTG	1 cut(s)	633
VneI	GTGCAC	1 cut(s)	874
XapI	RAATTY	1 cut(s)	249
XceI	RCATGY	2 cut(s)	568, 870
XmnI	GAANNNNTTC	1 cut(s)	347
Zsp2I	ATGCAT	2 cut(s)	570, 790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.