Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004966

Physical Location & Seq

Genomic Coordinates Forward (+)

31949297 .. 31950549

Gene Structure 1253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0302600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGTCCTCCTCAGCTCTGATACAGAAACCAAGATACTCGAACCAAGGGCCAAGCATGTGGGATCCTGATGCCCACGGATCAATGTATCGTAATGGCAGTGTGACTAGGGCGTTGGGGGGCTTGAATCTCAACGCTGGTAGGTGGGCTGACCCAAAGTGCATTCCACCGTGGGCCTTCAAGACCAAAGAAGACTTCCTTAAAGATAATTACTTTTTTCCCACCCCTTTGTGTTCTGATGTGGGTGATGGGCCTAGCCAAGCACAACCCAGTGCCGTCTCGTTGGTGGAGTTACCAAATGACCTTGTGTCAGAGGAAAACATGGTGACAAATCTCCCTGCAAAACAAAAAAGACAGGCTAAAACAAAAACTGATGGGGAAGTGACCGCCAGCACAAAAAAATCAAAAATCCCTTTTAGTCCTGGTCTCCGTCTGTCTACAGGAGCAGGTCGATCCAGGGGCAAAGGTAGAGGAAGTAGAGGTGGTAGGGGCAAGGGGAGAGCTAGTGTGAAAGATCTTGCCCCATCTGATAGTCTGAACGTGAGTTCCCAGGAGTGGATGGATAGGCCTATTAACATTGAGGCTGAACAACTAGAAGGAGAGTTGGTAGGCATAAGTGGCAAGATCAGGGTGACTTGGATGTATGGCCCACCCTATGCGACAGATAAGGAGGTTTTCTGGAATTTCTGGATAACCAATGGTAGAGGAGCTCAATCCCCTTGGCTGGTAATTGGGGACTTAAATGAGATGCTCTACCAATTCAAAATGGAAGGTGGGGTTCCCTGGAGTCCCAACAGACCTCAATACCTCAGAAGTTTTACTAATTCTAACTCCCTACTTGATATTGGCTTCAACGGGCAAAAGTTCACCTGGGCTAGAAAAGAGGGGAATGTTATCGTATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0004038 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0006950 GO:0006995 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016812 GO:0017144 GO:0019439 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034641 GO:0042594 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0050896 GO:0051716 GO:0055086 GO:0071496 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01120 map00230 map01100 map01120

Pfam Domains

Protein Families

Amidohydro_1

Protein Analysis

300

Amino Acids

33.09

Weight (kDa)

9.5

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04955 AT4G04955
fragaria_vesca	FvH4_3g09410 FvH4_3g09410 FvH4_3g09410 FvH4_3g09410
malus_domestica	MD00G1095000.v1.1 MD05G1314100.v1.1
prunus_persica	Prupe.4G045000_v2.0.a1
pyrus_communis	pycom05g29210
rosa_chinensis	RchiOBHm_Chr5g0008181
rosa_laevigata	RLG00000031540 RLG00000031544
rosa_multiflora	Rmu_sc0001352.1_g000006 Rmu_sc0001352.1_g000028 Rmu_sc0001626.1_g000019
rosa_roxburghii	Rroxscaffold_1G00068300
rosa_rugosa	Rorug03G0302600 Rorug04G0433600 Rorug04G0433700 Rorug04G0433800 Rorug04G0433900 Rorug04G0433900
rosa_samantha	Rh4AG007300 Rh4AG211200 Rh5AG062500 Rh5BG058600 Rh5CG069000 Rh5DG057900
rosa_wichuraiana	Rw5G005860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	434
AccI	GTMKAC	1 cut(s)	434
AciI	CCGC	1 cut(s)	384
AclWI	GGATC	4 cut(s)	56, 69, 85, 444
AcsI	RAATTY	1 cut(s)	679
AfiI	CCNNNNNNNGG	2 cut(s)	552, 721
AgsI	TTSAA	4 cut(s)	124, 178, 760, 850
AhdI	GACNNNNNGTC	1 cut(s)	304
AjnI	CCWGG	5 cut(s)	418, 452, 546, 779, 866
AjuI	GAANNNNNNNTTGG	2 cut(s)	176, 208
AloI	GAACNNNNNNTCC	2 cut(s)	527, 559
AluBI	AGCT	3 cut(s)	14, 500, 707
AluI	AGCT	3 cut(s)	14, 500, 707
Alw21I	GWGCWC	1 cut(s)	709
Alw26I	GTCTC	2 cut(s)	280, 428
AlwI	GGATC	4 cut(s)	56, 69, 85, 444
AoxI	GGCC	5 cut(s)	47, 171, 248, 563, 643
ApoI	RAATTY	1 cut(s)	679
AspS9I	GGNCC	4 cut(s)	47, 171, 248, 644
AsuHPI	GGTGA	4 cut(s)	254, 334, 640, 856
BamHI	GGATCC	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	709
BbsI	GAAGAC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	709
BbvCI	CCTCAGC	1 cut(s)	10
BccI	CCATC	4 cut(s)	239, 365, 529, 550
BceAI	ACGGC	1 cut(s)	257
BciT130I	CCWGG	5 cut(s)	420, 454, 548, 781, 868
BcoDI	GTCTC	2 cut(s)	280, 428
BfaI	CTAG	5 cut(s)	105, 252, 501, 590, 873
BfmI	CTRYAG	1 cut(s)	435
BfuAI	ACCTGC	1 cut(s)	434
BglII	AGATCT	1 cut(s)	511
Bme1390I	CCNGG	5 cut(s)	420, 454, 548, 781, 868
BmeRI	GACNNNNNGTC	1 cut(s)	304
BmgT120I	GGNCC	4 cut(s)	47, 171, 248, 644
BmiI	GGNNCC	2 cut(s)	63, 777
BmrFI	CCNGG	5 cut(s)	420, 454, 548, 781, 868
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	2 cut(s)	58, 735
BmuI	ACTGGG	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	195
BpmI	CTGGAG	1 cut(s)	802
Bpu10I	CCTNAGC	1 cut(s)	10
BsaI	GGTCTC	1 cut(s)	428
BsaJI	CCNNGG	8 cut(s)	43, 73, 167, 453, 546, 716, 779, 867
BsaXI	ACNNNNNCTCC	4 cut(s)	487, 517, 588, 618
Bsc4I	CCNNNNNNNGG	2 cut(s)	552, 721
Bse1I	ACTGG	1 cut(s)	267
BseBI	CCWGG	5 cut(s)	420, 454, 548, 781, 868
BseDI	CCNNGG	8 cut(s)	43, 73, 167, 453, 546, 716, 779, 867
BseGI	GGATG	2 cut(s)	561, 642
BseLI	CCNNNNNNNGG	2 cut(s)	552, 721
BseMII	CTCAG	2 cut(s)	24, 820
BseNI	ACTGG	1 cut(s)	267
BseRI	GAGGAG	1 cut(s)	717
BshFI	GGCC	5 cut(s)	49, 173, 250, 565, 645
BsiHKAI	GWGCWC	1 cut(s)	709
BslFI	GGGAC	2 cut(s)	746, 771
BslI	CCNNNNNNNGG	2 cut(s)	552, 721
BsmAI	GTCTC	2 cut(s)	280, 428
BsmBI	CGTCTC	1 cut(s)	280
BsmFI	GGGAC	2 cut(s)	746, 771
BsmI	GAATGC	1 cut(s)	159
BsnI	GGCC	5 cut(s)	49, 173, 250, 565, 645
Bso31I	GGTCTC	1 cut(s)	428
Bsp1286I	GDGCHC	1 cut(s)	709
Bsp143I	GATC	5 cut(s)	61, 77, 449, 511, 621
BspACI	CCGC	1 cut(s)	384
BspANI	GGCC	5 cut(s)	49, 173, 250, 565, 645
BspCNI	CTCAG	2 cut(s)	23, 819
BspLI	GGNNCC	2 cut(s)	63, 777
BspMI	ACCTGC	1 cut(s)	434
BspPI	GGATC	4 cut(s)	56, 69, 85, 444
BspTNI	GGTCTC	1 cut(s)	428
BsrI	ACTGG	1 cut(s)	267
BssECI	CCNNGG	8 cut(s)	43, 73, 167, 453, 546, 716, 779, 867
BssMI	GATC	5 cut(s)	61, 77, 449, 511, 621
BssT1I	CCWWGG	2 cut(s)	43, 716
Bst2UI	CCWGG	5 cut(s)	420, 454, 548, 781, 868
Bst4CI	ACNGT	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	388
BstDEI	CTNAG	2 cut(s)	10, 806
BstDSI	CCRYGG	2 cut(s)	73, 167
BstF5I	GGATG	2 cut(s)	561, 642
BstKTI	GATC	5 cut(s)	64, 80, 452, 514, 624
BstMAI	GTCTC	2 cut(s)	280, 428
BstMBI	GATC	5 cut(s)	61, 77, 449, 511, 621
BstMWI	GCNNNNNNNGC	1 cut(s)	615
BstNI	CCWGG	5 cut(s)	420, 454, 548, 781, 868
BstNSI	RCATGY	1 cut(s)	58
BstSCI	CCNGG	5 cut(s)	418, 452, 546, 779, 866
BstSFI	CTRYAG	1 cut(s)	435
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	2 cut(s)	61, 511
BstXI	CCANNNNNNTGG	1 cut(s)	57
BstYI	RGATCY	2 cut(s)	61, 511
BsuRI	GGCC	5 cut(s)	49, 173, 250, 565, 645
BtgI	CCRYGG	2 cut(s)	73, 167
BtsCI	GGATG	2 cut(s)	561, 642
BtsI	GCAGTG	1 cut(s)	103
BtsIMutI	CAGTG	2 cut(s)	103, 274
BveI	ACCTGC	1 cut(s)	434
Cac8I	GCNNGC	1 cut(s)	388
Cfr13I	GGNCC	4 cut(s)	47, 171, 248, 644
CviAII	CATG	2 cut(s)	55, 319
DdeI	CTNAG	2 cut(s)	10, 806
DpnI	GATC	5 cut(s)	63, 79, 451, 513, 623
DpnII	GATC	5 cut(s)	61, 77, 449, 511, 621
DriI	GACNNNNNGTC	1 cut(s)	304
Eam1105I	GACNNNNNGTC	1 cut(s)	304
Ecl136II	GAGCTC	1 cut(s)	707
Eco130I	CCWWGG	2 cut(s)	43, 716
Eco147I	AGGCCT	1 cut(s)	565
Eco24I	GRGCYC	1 cut(s)	709
Eco31I	GGTCTC	1 cut(s)	428
Eco53kI	GAGCTC	1 cut(s)	707
EcoICRI	GAGCTC	1 cut(s)	707
EcoRII	CCWGG	5 cut(s)	418, 452, 546, 779, 866
EcoT14I	CCWWGG	2 cut(s)	43, 716
EcoT38I	GRGCYC	1 cut(s)	709
ErhI	CCWWGG	2 cut(s)	43, 716
Esp3I	CGTCTC	1 cut(s)	280
FaeI	CATG	2 cut(s)	58, 322
FaiI	YATR	6 cut(s)	56, 320, 611, 642, 654, 901
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FaqI	GGGAC	2 cut(s)	746, 771
FatI	CATG	2 cut(s)	54, 318
FblI	GTMKAC	1 cut(s)	434
FokI	GGATG	2 cut(s)	568, 649
FriOI	GRGCYC	1 cut(s)	709
FspBI	CTAG	5 cut(s)	105, 252, 501, 590, 873
GsuI	CTGGAG	1 cut(s)	802
HaeIII	GGCC	5 cut(s)	49, 173, 250, 565, 645
Hin1II	CATG	2 cut(s)	58, 322
HinfI	GANTC	2 cut(s)	124, 784
HphI	GGTGA	4 cut(s)	254, 334, 640, 856
Hpy166II	GTNNAC	2 cut(s)	435, 864
Hpy188I	TCNGA	6 cut(s)	18, 235, 310, 526, 534, 809
Hpy188III	TCNNGA	4 cut(s)	65, 178, 676, 685
Hpy8I	GTNNAC	2 cut(s)	435, 864
HpyAV	CCTTC	3 cut(s)	184, 587, 761
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4IV	ACGT	1 cut(s)	537
HpyCH4V	TGCA	2 cut(s)	159, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	615
HpyF3I	CTNAG	2 cut(s)	10, 806
HpySE526I	ACGT	1 cut(s)	537
Hsp92II	CATG	2 cut(s)	58, 322
Kzo9I	GATC	5 cut(s)	61, 77, 449, 511, 621
LmnI	GCTCC	2 cut(s)	440, 704
LweI	GCATC	2 cut(s)	58, 735
MaeI	CTAG	5 cut(s)	105, 252, 501, 590, 873
MaeII	ACGT	1 cut(s)	537
MaeIII	GTNAC	5 cut(s)	100, 288, 322, 379, 628
MalI	GATC	5 cut(s)	63, 79, 451, 513, 623
MboI	GATC	5 cut(s)	61, 77, 449, 511, 621
MboII	GAAGA	1 cut(s)	200
MflI	RGATCY	2 cut(s)	61, 511
MhlI	GDGCHC	1 cut(s)	709
MluCI	AATT	5 cut(s)	205, 679, 726, 755, 820
MlyI	GAGTC	1 cut(s)	793
MseI	TTAA	3 cut(s)	198, 570, 737
MspR9I	CCNGG	5 cut(s)	420, 454, 548, 781, 868
Mva1269I	GAATGC	1 cut(s)	159
MvaI	CCWGG	5 cut(s)	420, 454, 548, 781, 868
MwoI	GCNNNNNNNGC	1 cut(s)	615
NdeII	GATC	5 cut(s)	61, 77, 449, 511, 621
NlaIII	CATG	2 cut(s)	58, 322
NlaIV	GGNNCC	2 cut(s)	63, 777
NmuCI	GTSAC	4 cut(s)	100, 322, 379, 628
NspI	RCATGY	1 cut(s)	58
PceI	AGGCCT	1 cut(s)	565
PctI	GAATGC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	124
PleI	GAGTC	1 cut(s)	792
PpsI	GAGTC	1 cut(s)	792
Psp124BI	GAGCTC	1 cut(s)	709
Psp6I	CCWGG	5 cut(s)	418, 452, 546, 779, 866
PspGI	CCWGG	5 cut(s)	418, 452, 546, 779, 866
PspN4I	GGNNCC	2 cut(s)	63, 777
PspPI	GGNCC	4 cut(s)	47, 171, 248, 644
PsuI	RGATCY	2 cut(s)	61, 511
SacI	GAGCTC	1 cut(s)	709
SaqAI	TTAA	3 cut(s)	198, 570, 737
Sau3AI	GATC	5 cut(s)	61, 77, 449, 511, 621
Sau96I	GGNCC	4 cut(s)	47, 171, 248, 644
SchI	GAGTC	1 cut(s)	793
ScrFI	CCNGG	5 cut(s)	420, 454, 548, 781, 868
SduI	GDGCHC	1 cut(s)	709
SfaNI	GCATC	2 cut(s)	58, 735
SfcI	CTRYAG	1 cut(s)	435
Sse9I	AATT	5 cut(s)	205, 679, 726, 755, 820
SseBI	AGGCCT	1 cut(s)	565
SsiI	CCGC	1 cut(s)	384
SspMI	CTAG	5 cut(s)	105, 252, 501, 590, 873
SstI	GAGCTC	1 cut(s)	709
StuI	AGGCCT	1 cut(s)	565
StyD4I	CCNGG	5 cut(s)	418, 452, 546, 779, 866
StyI	CCWWGG	2 cut(s)	43, 716
TaaI	ACNGT	1 cut(s)	168
TaiI	ACGT	1 cut(s)	540
TaqI	TCGA	2 cut(s)	38, 448
TasI	AATT	5 cut(s)	205, 679, 726, 755, 820
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	3 cut(s)	198, 570, 737
Tru9I	TTAA	3 cut(s)	198, 570, 737
TscAI	CASTG	2 cut(s)	103, 274
TseFI	GTSAC	4 cut(s)	100, 322, 379, 628
Tsp45I	GTSAC	4 cut(s)	100, 322, 379, 628
TspGWI	ACGGA	2 cut(s)	90, 416
TspRI	CASTG	2 cut(s)	103, 274
XapI	RAATTY	1 cut(s)	679
XceI	RCATGY	1 cut(s)	58
XmiI	GTMKAC	1 cut(s)	434
XspI	CTAG	5 cut(s)	105, 252, 501, 590, 873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.