Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004966

Physical Location & Seq

Genomic Coordinates Reverse (-)

50389183 .. 50391360

Gene Structure 2178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG211200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGCCTCTAAATAGCTTTCCTTCCACTGTCTCTAGAGAGACTTTGGAGCTCAAGCTTAAGGCTGCGGAAAGCAGAATTTACGTTGATGTTGGTTTCTGGGGAGGCCTTGTTCCTGAAAATGCATTCAATAAATCTGCTCTTGAGGATCTCTTAAATGCCGGTGCTCTTGGTTTGAAGTCTTTCATGTGTCCATCAGGGATCAATGACTTTCCTATGACAAACAGCAGTCATATTAAGGAGGGTCTGTTTGTACTGGCAAAATATCGAAGGCCTTTACTTGTACATGCAGAGAAACAACTAGATCCTGAAACTAACTTGGGAGTCGAAGATGGTCGTAATGATGCTCGTTCCTATTCGACATATCTTAAGACTAGACCACCTTCATGGGAAGAGGCAGCTATAAAGGATCTCGTTACCTTTACAAAGGACACAAGGATCGGTGCTCCTGCAGAAGGAGCTCATCTTCATATTGTGCACTTGTCTGACTCAAGCTCTTCATTAGATCTTATTAAGGAAGCAAAAAGTGGTGGCGATAGTTTAACTGTTGAGACGTGCCCCCACTACTTAGCTTTCTCCGCCGAAGAGATTCGGGATGGAGCTACTCGTTTTAAGTGTTCTCCGCCCATCCTTGATGCTGTCAATAAGGAAAAACTGTGGAACGCTTTGTTGGAAGGGGATCTTGACATGTTAAGCTCTGATCATTCTCCAACAACACCCGAACTTAAGCGTCTGGATGATGGTGACTTTTTAAAGGCTTGGGGTGGCATATCGTGCTTGCAGTTTGTTCTTCCTGTGACATGGTCGTATGGCCAGATATATGGAGTGACTTTAGAACAAATGGCTCTGTGGTGGAGTGAAAGGCCGGCCAAGCTTGCTGGACAAAAACTAAAGGGGGCAATTGCAATTGGAAACTATGCAGATATTGTGGTATGGAATCCAGATGTTGATTTTGACCTTGACAGTGACGTACTATCCTATACACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0004038 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0006950 GO:0006995 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016812 GO:0017144 GO:0019439 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034641 GO:0042594 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0050896 GO:0051716 GO:0055086 GO:0071496 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01120 map00230 map01100 map01120

Pfam Domains

Protein Families

Amidohydro_1

Protein Analysis

328

Amino Acids

36.18

Weight (kDa)

5.03

Isoelectric Point (pI)

41.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amidohydro_1	PF01979	127 - 321	2.1e-08	Amidohydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04955 AT4G04955
fragaria_vesca	FvH4_3g09410 FvH4_3g09410 FvH4_3g09410 FvH4_3g09410
malus_domestica	MD00G1095000.v1.1 MD05G1314100.v1.1
prunus_persica	Prupe.4G045000_v2.0.a1
pyrus_communis	pycom05g29210
rosa_chinensis	RchiOBHm_Chr5g0008181
rosa_laevigata	RLG00000031540 RLG00000031544
rosa_multiflora	Rmu_sc0001352.1_g000006 Rmu_sc0001352.1_g000028 Rmu_sc0001626.1_g000019
rosa_roxburghii	Rroxscaffold_1G00068300
rosa_rugosa	Rorug03G0302600 Rorug04G0433600 Rorug04G0433700 Rorug04G0433800 Rorug04G0433900 Rorug04G0433900
rosa_samantha	Rh4AG007300 Rh4AG211200 Rh5AG062500 Rh5BG058600 Rh5CG069000 Rh5DG057900
rosa_wichuraiana	Rw5G005860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	65, 576, 620
AclWI	GGATC	6 cut(s)	153, 206, 296, 414, 443, 684
AcoI	YGGCCR	2 cut(s)	808, 864
AcsI	RAATTY	1 cut(s)	75
AfaI	GTAC	3 cut(s)	252, 282, 969
AfiI	CCNNNNNNNGG	1 cut(s)	452
AflII	CTTAAG	3 cut(s)	56, 365, 722
AflIII	ACRYGT	1 cut(s)	684
AgsI	TTSAA	2 cut(s)	127, 175
AjiI	CACGTC	1 cut(s)	552
AjuI	GAANNNNNNNTTGG	2 cut(s)	650, 682
AloI	GAACNNNNNNTCC	2 cut(s)	93, 125
Alw21I	GWGCWC	5 cut(s)	51, 166, 445, 460, 477
Alw26I	GTCTC	3 cut(s)	32, 34, 542
Alw44I	GTGCAC	1 cut(s)	473
AlwI	GGATC	6 cut(s)	153, 206, 296, 414, 443, 684
AoxI	GGCC	5 cut(s)	103, 269, 808, 860, 864
ApaLI	GTGCAC	1 cut(s)	473
ApeKI	GCWGC	2 cut(s)	62, 395
ApoI	RAATTY	1 cut(s)	75
Asp700I	GAANNNNTTC	2 cut(s)	179, 585
AsuHPI	GGTGA	1 cut(s)	752
BaeGI	GKGCMC	2 cut(s)	477, 557
BalI	TGGCCA	1 cut(s)	810
BanII	GRGCYC	2 cut(s)	51, 460
Bbv12I	GWGCWC	5 cut(s)	51, 166, 445, 460, 477
BbvI	GCAGC	2 cut(s)	49, 407
BccI	CCATC	5 cut(s)	199, 323, 587, 632, 731
BclI	TGATCA	1 cut(s)	697
BcoDI	GTCTC	3 cut(s)	32, 34, 542
BfaI	CTAG	3 cut(s)	33, 299, 372
BfmI	CTRYAG	1 cut(s)	447
BfrI	CTTAAG	3 cut(s)	56, 365, 722
BglII	AGATCT	1 cut(s)	502
BisI	GCNGC	2 cut(s)	63, 396
BlsI	GCNGC	2 cut(s)	64, 397
BmgBI	CACGTC	1 cut(s)	552
BmsI	GCATC	2 cut(s)	331, 622
BpuEI	CTTGAG	3 cut(s)	35, 161, 472
BsaXI	ACNNNNNCTCC	4 cut(s)	93, 123, 230, 260
Bsc4I	CCNNNNNNNGG	1 cut(s)	452
Bse118I	RCCGGY	2 cut(s)	158, 862
Bse1I	ACTGG	1 cut(s)	258
BseGI	GGATG	3 cut(s)	598, 624, 739
BseLI	CCNNNNNNNGG	1 cut(s)	452
BseNI	ACTGG	1 cut(s)	258
BseSI	GKGCMC	2 cut(s)	477, 557
BseXI	GCAGC	2 cut(s)	49, 407
BshFI	GGCC	5 cut(s)	105, 271, 810, 862, 866
BsiHKAI	GWGCWC	5 cut(s)	51, 166, 445, 460, 477
BsiSI	CCGG	2 cut(s)	159, 863
BslI	CCNNNNNNNGG	1 cut(s)	452
BsmAI	GTCTC	3 cut(s)	32, 34, 542
BsmBI	CGTCTC	1 cut(s)	542
BsmI	GAATGC	1 cut(s)	122
BsnI	GGCC	5 cut(s)	105, 271, 810, 862, 866
Bsp1286I	GDGCHC	6 cut(s)	51, 166, 445, 460, 477, 557
Bsp1407I	TGTACA	1 cut(s)	280
Bsp143I	GATC	8 cut(s)	145, 198, 301, 406, 435, 502, 676, 697
BspACI	CCGC	3 cut(s)	65, 576, 620
BspANI	GGCC	5 cut(s)	105, 271, 810, 862, 866
BspMAI	CTGCAG	1 cut(s)	451
BspPI	GGATC	6 cut(s)	153, 206, 296, 414, 443, 684
BspQI	GCTCTTC	1 cut(s)	499
BspTI	CTTAAG	3 cut(s)	56, 365, 722
BsrFI	RCCGGY	2 cut(s)	158, 862
BsrGI	TGTACA	1 cut(s)	280
BsrI	ACTGG	1 cut(s)	258
BssAI	RCCGGY	2 cut(s)	158, 862
BssMI	GATC	8 cut(s)	145, 198, 301, 406, 435, 502, 676, 697
Bst4CI	ACNGT	4 cut(s)	28, 544, 654, 962
Bst6I	CTCTTC	3 cut(s)	384, 499, 576
BstAFI	CTTAAG	3 cut(s)	56, 365, 722
BstAPI	GCANNNNNTGC	1 cut(s)	771
BstAUI	TGTACA	1 cut(s)	280
BstC8I	GCNNGC	3 cut(s)	776, 864, 873
BstDEI	CTNAG	1 cut(s)	565
BstENI	CCTNNNNNAGG	1 cut(s)	450
BstF5I	GGATG	3 cut(s)	598, 624, 739
BstKTI	GATC	8 cut(s)	148, 201, 304, 409, 438, 505, 679, 700
BstMAI	GTCTC	3 cut(s)	32, 34, 542
BstMBI	GATC	8 cut(s)	145, 198, 301, 406, 435, 502, 676, 697
BstMWI	GCNNNNNNNGC	5 cut(s)	455, 575, 771, 868, 872
BstNSI	RCATGY	2 cut(s)	287, 688
BstSFI	CTRYAG	1 cut(s)	447
BstSLI	GKGCMC	2 cut(s)	477, 557
BstV1I	GCAGC	2 cut(s)	49, 407
BstX2I	RGATCY	5 cut(s)	145, 301, 406, 502, 676
BstXI	CCANNNNNNTGG	2 cut(s)	384, 818
BstYI	RGATCY	5 cut(s)	145, 301, 406, 502, 676
BsuRI	GGCC	5 cut(s)	105, 271, 810, 862, 866
BtrI	CACGTC	1 cut(s)	552
BtsCI	GGATG	3 cut(s)	598, 624, 739
BtsIMutI	CAGTG	2 cut(s)	24, 967
Cac8I	GCNNGC	3 cut(s)	776, 864, 873
Cfr10I	RCCGGY	2 cut(s)	158, 862
CseI	GACGC	1 cut(s)	716
Csp6I	GTAC	3 cut(s)	251, 281, 968
CviAII	CATG	5 cut(s)	184, 284, 384, 685, 798
CviQI	GTAC	3 cut(s)	251, 281, 968
DdeI	CTNAG	1 cut(s)	565
DpnI	GATC	8 cut(s)	147, 200, 303, 408, 437, 504, 678, 699
DpnII	GATC	8 cut(s)	145, 198, 301, 406, 435, 502, 676, 697
DraI	TTTAAA	1 cut(s)	750
EaeI	YGGCCR	2 cut(s)	808, 864
Eam1104I	CTCTTC	3 cut(s)	384, 499, 576
EarI	CTCTTC	3 cut(s)	384, 499, 576
EciI	GGCGGA	2 cut(s)	565, 609
Ecl136II	GAGCTC	2 cut(s)	49, 458
Eco147I	AGGCCT	2 cut(s)	105, 271
Eco24I	GRGCYC	2 cut(s)	51, 460
Eco53kI	GAGCTC	2 cut(s)	49, 458
EcoICRI	GAGCTC	2 cut(s)	49, 458
EcoNI	CCTNNNNNAGG	1 cut(s)	450
EcoT22I	ATGCAT	1 cut(s)	124
EcoT38I	GRGCYC	2 cut(s)	51, 460
Esp3I	CGTCTC	1 cut(s)	542
FaeI	CATG	5 cut(s)	187, 287, 387, 688, 801
FalI	AAGNNNNNCTT	2 cut(s)	663, 695
FatI	CATG	5 cut(s)	183, 283, 383, 684, 797
FbaI	TGATCA	1 cut(s)	697
Fnu4HI	GCNGC	2 cut(s)	63, 396
FokI	GGATG	3 cut(s)	605, 611, 746
FriOI	GRGCYC	2 cut(s)	51, 460
FseI	GGCCGGCC	1 cut(s)	866
Fsp4HI	GCNGC	2 cut(s)	63, 396
FspBI	CTAG	3 cut(s)	33, 299, 372
GluI	GCNGC	2 cut(s)	63, 396
HaeIII	GGCC	5 cut(s)	105, 271, 810, 862, 866
HapII	CCGG	2 cut(s)	159, 863
HgaI	GACGC	1 cut(s)	716
Hin1II	CATG	5 cut(s)	187, 287, 387, 688, 801
HindIII	AAGCTT	2 cut(s)	53, 869
HinfI	GANTC	4 cut(s)	321, 485, 586, 934
HpaII	CCGG	2 cut(s)	159, 863
HphI	GGTGA	1 cut(s)	752
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	2 cut(s)	484, 697
Hpy188III	TCNNGA	8 cut(s)	33, 113, 140, 305, 590, 680, 731, 938
Hpy8I	GTNNAC	1 cut(s)	475
HpyAV	CCTTC	5 cut(s)	30, 261, 390, 446, 665
HpyCH4III	ACNGT	4 cut(s)	28, 544, 654, 962
HpyCH4IV	ACGT	3 cut(s)	81, 551, 966
HpyCH4V	TGCA	7 cut(s)	122, 287, 449, 475, 778, 902, 917
HpyF10VI	GCNNNNNNNGC	5 cut(s)	455, 575, 771, 868, 872
HpyF3I	CTNAG	1 cut(s)	565
HpySE526I	ACGT	3 cut(s)	81, 551, 966
Hsp92II	CATG	5 cut(s)	187, 287, 387, 688, 801
KroI	GCCGGC	1 cut(s)	862
KroNI	GCCGGC	1 cut(s)	864
Ksp22I	TGATCA	1 cut(s)	697
Kzo9I	GATC	8 cut(s)	145, 198, 301, 406, 435, 502, 676, 697
LguI	GCTCTTC	1 cut(s)	499
LmnI	GCTCC	4 cut(s)	46, 448, 455, 596
Lsp1109I	GCAGC	2 cut(s)	49, 407
LweI	GCATC	2 cut(s)	331, 622
MaeI	CTAG	3 cut(s)	33, 299, 372
MaeII	ACGT	3 cut(s)	81, 551, 966
MaeIII	GTNAC	5 cut(s)	412, 740, 793, 823, 962
MalI	GATC	8 cut(s)	147, 200, 303, 408, 437, 504, 678, 699
MboI	GATC	8 cut(s)	145, 198, 301, 406, 435, 502, 676, 697
MboII	GAAGA	6 cut(s)	338, 401, 455, 486, 593, 779
MfeI	CAATTG	2 cut(s)	897, 903
MflI	RGATCY	5 cut(s)	145, 301, 406, 502, 676
MhlI	GDGCHC	6 cut(s)	51, 166, 445, 460, 477, 557
MlsI	TGGCCA	1 cut(s)	810
MluCI	AATT	3 cut(s)	75, 897, 903
MluNI	TGGCCA	1 cut(s)	810
MlyI	GAGTC	2 cut(s)	330, 479
MmeI	TCCRAC	2 cut(s)	648, 731
MnlI	CCTC	5 cut(s)	15, 95, 136, 232, 385
Mox20I	TGGCCA	1 cut(s)	810
Mph1103I	ATGCAT	1 cut(s)	124
MroNI	GCCGGC	1 cut(s)	862
MroXI	GAANNNNTTC	2 cut(s)	179, 585
MscI	TGGCCA	1 cut(s)	810
MslI	CAYNNNNRTG	1 cut(s)	382
Msp20I	TGGCCA	1 cut(s)	810
MspCI	CTTAAG	3 cut(s)	56, 365, 722
MspI	CCGG	2 cut(s)	159, 863
MunI	CAATTG	2 cut(s)	897, 903
Mva1269I	GAATGC	1 cut(s)	122
MwoI	GCNNNNNNNGC	5 cut(s)	455, 575, 771, 868, 872
NaeI	GCCGGC	1 cut(s)	864
NdeII	GATC	8 cut(s)	145, 198, 301, 406, 435, 502, 676, 697
NgoMIV	GCCGGC	1 cut(s)	862
NlaIII	CATG	5 cut(s)	187, 287, 387, 688, 801
NmuCI	GTSAC	4 cut(s)	740, 793, 823, 962
NsiI	ATGCAT	1 cut(s)	124
NspI	RCATGY	2 cut(s)	287, 688
PceI	AGGCCT	2 cut(s)	105, 271
PciI	ACATGT	1 cut(s)	684
PciSI	GCTCTTC	1 cut(s)	499
PctI	GAATGC	1 cut(s)	122
PdiI	GCCGGC	1 cut(s)	864
PdmI	GAANNNNTTC	2 cut(s)	179, 585
PfeI	GAWTC	2 cut(s)	586, 934
PflFI	GACNNNGTC	1 cut(s)	799
PkrI	GCNGC	2 cut(s)	64, 397
PleI	GAGTC	2 cut(s)	329, 479
PpsI	GAGTC	2 cut(s)	329, 479
PscI	ACATGT	1 cut(s)	684
Psp124BI	GAGCTC	2 cut(s)	51, 460
PstI	CTGCAG	1 cut(s)	451
PsuI	RGATCY	5 cut(s)	145, 301, 406, 502, 676
PsyI	GACNNNGTC	1 cut(s)	799
RigI	GGCCGGCC	1 cut(s)	866
RsaI	GTAC	3 cut(s)	252, 282, 969
RsaNI	GTAC	3 cut(s)	251, 281, 968
RseI	CAYNNNNRTG	1 cut(s)	382
SacI	GAGCTC	2 cut(s)	51, 460
SapI	GCTCTTC	1 cut(s)	499
SatI	GCNGC	2 cut(s)	63, 396
Sau3AI	GATC	8 cut(s)	145, 198, 301, 406, 435, 502, 676, 697
SchI	GAGTC	2 cut(s)	330, 479
SduI	GDGCHC	6 cut(s)	51, 166, 445, 460, 477, 557
SfaNI	GCATC	2 cut(s)	331, 622
SfcI	CTRYAG	1 cut(s)	447
SmiMI	CAYNNNNRTG	1 cut(s)	382
SmlI	CTYRAG	6 cut(s)	50, 56, 140, 365, 487, 722
SmoI	CTYRAG	6 cut(s)	50, 56, 140, 365, 487, 722
Sse9I	AATT	3 cut(s)	75, 897, 903
SseBI	AGGCCT	2 cut(s)	105, 271
SsiI	CCGC	3 cut(s)	65, 576, 620
SspMI	CTAG	3 cut(s)	33, 299, 372
SstI	GAGCTC	2 cut(s)	51, 460
StuI	AGGCCT	2 cut(s)	105, 271
TaaI	ACNGT	4 cut(s)	28, 544, 654, 962
TaiI	ACGT	3 cut(s)	84, 554, 969
TaqI	TCGA	3 cut(s)	265, 324, 356
TasI	AATT	3 cut(s)	75, 897, 903
TatI	WGTACW	2 cut(s)	250, 280
TfiI	GAWTC	2 cut(s)	586, 934
TscAI	CASTG	2 cut(s)	31, 967
TseFI	GTSAC	4 cut(s)	740, 793, 823, 962
TseI	GCWGC	2 cut(s)	62, 395
Tsp45I	GTSAC	4 cut(s)	740, 793, 823, 962
TspDTI	ATGAA	4 cut(s)	172, 372, 455, 486
TspRI	CASTG	2 cut(s)	31, 967
Tth111I	GACNNNGTC	1 cut(s)	799
Vha464I	CTTAAG	3 cut(s)	56, 365, 722
VneI	GTGCAC	1 cut(s)	473
XagI	CCTNNNNNAGG	1 cut(s)	450
XapI	RAATTY	1 cut(s)	75
XbaI	TCTAGA	1 cut(s)	32
XceI	RCATGY	2 cut(s)	287, 688
XmnI	GAANNNNTTC	2 cut(s)	179, 585
XspI	CTAG	3 cut(s)	33, 299, 372
Zsp2I	ATGCAT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.