Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004937

Physical Location & Seq

Genomic Coordinates Forward (+)

4007095 .. 4011072

Gene Structure 3978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0028600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCAGTCTGCTCCTCGCCACTTGCAGTTGTCTCTCCCAAACCAGCAGCACTCCCCAAACTCACCTCTAAGCTATCGCAAACTAGGCTTAACGTTTCCTCGGGTCACATTCACAGCCCCTCCAAATCATCATTGCTCGTAAACTTGTCTAAGAGAAGTTTCACACGGTTGAACGCTGCTGGGTTCGCAGAGATCGAGCCTGATCTCAATGAAGACCCCACTAACCGTTGGGAAACTAACAGCATCTCCGCGGAGGATTTTAAGTATGGAGACTATGATGACCACCATACTTACCATGAAGGAGAGGAGACAGGAACCTTCTGGGGATCAATAGCAGAAGATGTTGAAGCAGTAGGACCCCCTACAGGTTTTCAGGGTTTAATATCATGGCTTTTTCCCCCTGCAGTTGCTGCCGCAATGTATTTTCATGCTCCGGGGGAGTACTTGTTCATTGGAGCGGGTCTATTTACGATTGTATTTTGTATTATTGAGATGGATAAGCCAGATCAACCCCACAACTTTGAGCCTCAGATATACAATATGGAGAGGGGATCTCGTGACAAGTTGATAGCTGATTACAATACCATGGATATCTGGGATTTCAATGAGAAATATGGGGACCTATGGGATTTCACTGTGAAGGCGAAGGATGATATAACAAAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

F-box-like Kelch_2 Kelch_4 PAS_9

Protein Analysis

222

Amino Acids

24.86

Weight (kDa)

4.86

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18915 AT2G18915 AT5G57360 AT5G57360
fragaria_vesca	FvH4_4g07890 FvH4_4g07890
malus_domestica	MD13G1249400.v1.1 MD16G1255700.v1.1
prunus_persica	Prupe.1G082600_v2.0.a1 Prupe.1G082600_v2.0.a1 Prupe.1G082600_v2.0.a1 Prupe.1G082600_v2.0.a1 Prupe.1G082600_v2.0.a1
pyrus_communis	pycom13g21980 pycom16g21690
rosa_chinensis	RchiOBHm_Chr4g0401181
rosa_laevigata	RLG00000009157
rosa_multiflora	Rmu_sc0003257.1_g000002 Rmu_sc0017177.1_g000004
rosa_roxburghii	Rroxscaffold_5G00346030
rosa_rugosa	Rorug04G0028600 Rorug04G0028600 Rorug04G0028700 Rorug04G0028800
rosa_samantha	Rh4AG106200 Rh4AG106300 Rh4BG101000 Rh4CG115200 Rh4DG098200
rosa_wichuraiana	Rw4G008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	458
AccII	CGCG	1 cut(s)	251
AciI	CCGC	4 cut(s)	249, 251, 414, 458
AclI	AACGTT	1 cut(s)	93
AclWI	GGATC	2 cut(s)	334, 559
AfaI	GTAC	1 cut(s)	443
AfiI	CCNNNNNNNGG	1 cut(s)	365
AgsI	TTSAA	3 cut(s)	172, 347, 604
AloI	GAACNNNNNNTCC	2 cut(s)	431, 463
AluBI	AGCT	2 cut(s)	73, 572
AluI	AGCT	2 cut(s)	73, 572
Alw26I	GTCTC	3 cut(s)	37, 264, 302
AlwI	GGATC	2 cut(s)	334, 559
AlwNI	CAGNNNCTG	1 cut(s)	410
Ama87I	CYCGRG	1 cut(s)	100
ApeKI	GCWGC	3 cut(s)	47, 176, 410
AspS9I	GGNCC	2 cut(s)	356, 619
AsuC2I	CCSGG	1 cut(s)	435
AsuHPI	GGTGA	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	100
AvaII	GGWCC	2 cut(s)	356, 619
BauI	CACGAG	1 cut(s)	555
BbsI	GAAGAC	1 cut(s)	219
BbvI	GCAGC	3 cut(s)	59, 163, 397
BccI	CCATC	1 cut(s)	487
BcnI	CCSGG	1 cut(s)	435
BcoDI	GTCTC	3 cut(s)	37, 264, 302
BfaI	CTAG	1 cut(s)	84
BfmI	CTRYAG	2 cut(s)	363, 402
BisI	GCNGC	4 cut(s)	48, 177, 411, 414
BlsI	GCNGC	4 cut(s)	49, 178, 412, 415
BmcAI	AGTACT	1 cut(s)	443
Bme1390I	CCNGG	1 cut(s)	435
Bme18I	GGWCC	2 cut(s)	356, 619
BmeT110I	CYCGRG	1 cut(s)	100
BmgT120I	GGNCC	2 cut(s)	356, 619
BmiI	GGNNCC	3 cut(s)	316, 358, 620
BmrFI	CCNGG	1 cut(s)	435
BmsI	GCATC	1 cut(s)	252
BpiI	GAAGAC	1 cut(s)	219
BplI	GAGNNNNNCTC	2 cut(s)	538, 570
BpuMI	CCSGG	1 cut(s)	435
BsaJI	CCNNGG	4 cut(s)	99, 249, 434, 585
BsaXI	ACNNNNNCTCC	6 cut(s)	104, 134, 230, 260, 431, 461
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
Bse3DI	GCAATG	2 cut(s)	131, 423
BseDI	CCNNGG	4 cut(s)	99, 249, 434, 585
BseGI	GGATG	1 cut(s)	655
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseMI	GCAATG	2 cut(s)	131, 423
BseMII	CTCAG	1 cut(s)	542
BseRI	GAGGAG	2 cut(s)	4, 320
BseXI	GCAGC	3 cut(s)	59, 163, 397
BseYI	CCCAGC	1 cut(s)	179
Bsh1236I	CGCG	1 cut(s)	251
BsiHKCI	CYCGRG	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	434
BslFI	GGGAC	1 cut(s)	632
BslI	CCNNNNNNNGG	1 cut(s)	365
BsmAI	GTCTC	3 cut(s)	37, 264, 302
BsmFI	GGGAC	1 cut(s)	632
BsoBI	CYCGRG	1 cut(s)	100
Bsp143I	GATC	5 cut(s)	192, 202, 326, 505, 551
Bsp19I	CCATGG	1 cut(s)	585
BspACI	CCGC	4 cut(s)	249, 251, 414, 458
BspCNI	CTCAG	1 cut(s)	541
BspFNI	CGCG	1 cut(s)	251
BspLI	GGNNCC	3 cut(s)	316, 358, 620
BspMAI	CTGCAG	1 cut(s)	406
BspPI	GGATC	2 cut(s)	334, 559
BsrBI	CCGCTC	1 cut(s)	458
BsrDI	GCAATG	2 cut(s)	131, 423
BssECI	CCNNGG	4 cut(s)	99, 249, 434, 585
BssMI	GATC	5 cut(s)	192, 202, 326, 505, 551
BssSI	CACGAG	1 cut(s)	555
BssT1I	CCWWGG	1 cut(s)	585
Bst2BI	CACGAG	1 cut(s)	555
Bst4CI	ACNGT	3 cut(s)	168, 227, 637
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstDEI	CTNAG	3 cut(s)	69, 150, 528
BstDSI	CCRYGG	2 cut(s)	249, 585
BstF5I	GGATG	1 cut(s)	655
BstFNI	CGCG	1 cut(s)	251
BstKTI	GATC	5 cut(s)	195, 205, 329, 508, 554
BstMAI	GTCTC	3 cut(s)	37, 264, 302
BstMBI	GATC	5 cut(s)	192, 202, 326, 505, 551
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 185, 410
BstSCI	CCNGG	1 cut(s)	433
BstSFI	CTRYAG	2 cut(s)	363, 402
BstUI	CGCG	1 cut(s)	251
BstV1I	GCAGC	3 cut(s)	59, 163, 397
BstV2I	GAAGAC	1 cut(s)	219
BstX2I	RGATCY	1 cut(s)	551
BstYI	RGATCY	1 cut(s)	551
BtgI	CCRYGG	2 cut(s)	249, 585
BtsCI	GGATG	1 cut(s)	655
BtsIMutI	CAGTG	1 cut(s)	633
CaiI	CAGNNNCTG	1 cut(s)	410
Cfr13I	GGNCC	2 cut(s)	356, 619
Cfr42I	CCGCGG	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	442
CviAII	CATG	4 cut(s)	296, 387, 428, 586
CviJI	RGCY	8 cut(s)	73, 88, 117, 199, 391, 502, 526, 572
CviKI_1	RGCY	8 cut(s)	73, 88, 117, 199, 391, 502, 526, 572
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	3 cut(s)	69, 150, 528
DpnI	GATC	5 cut(s)	194, 204, 328, 507, 553
DpnII	GATC	5 cut(s)	192, 202, 326, 505, 551
Eco130I	CCWWGG	1 cut(s)	585
Eco32I	GATATC	1 cut(s)	592
Eco47I	GGWCC	2 cut(s)	356, 619
Eco88I	CYCGRG	1 cut(s)	100
EcoO109I	RGGNCCY	2 cut(s)	356, 619
EcoRV	GATATC	1 cut(s)	592
EcoT14I	CCWWGG	1 cut(s)	585
ErhI	CCWWGG	1 cut(s)	585
FaeI	CATG	4 cut(s)	299, 390, 431, 589
FaqI	GGGAC	1 cut(s)	632
FatI	CATG	4 cut(s)	295, 386, 427, 585
FauI	CCCGC	1 cut(s)	451
Fnu4HI	GCNGC	4 cut(s)	48, 177, 411, 414
FokI	GGATG	1 cut(s)	662
Fsp4HI	GCNGC	4 cut(s)	48, 177, 411, 414
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	4 cut(s)	48, 177, 411, 414
GsaI	CCCAGC	1 cut(s)	183
HapII	CCGG	1 cut(s)	434
Hin1II	CATG	4 cut(s)	299, 390, 431, 589
HpaII	CCGG	1 cut(s)	434
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	1 cut(s)	531
Hpy188III	TCNNGA	1 cut(s)	557
Hpy8I	GTNNAC	1 cut(s)	142
HpyAV	CCTTC	4 cut(s)	293, 328, 634, 640
HpyCH4III	ACNGT	3 cut(s)	168, 227, 637
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	2 cut(s)	26, 404
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 185, 410
HpyF3I	CTNAG	3 cut(s)	69, 150, 528
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	4 cut(s)	299, 390, 431, 589
KspI	CCGCGG	1 cut(s)	252
Kzo9I	GATC	5 cut(s)	192, 202, 326, 505, 551
LmnI	GCTCC	3 cut(s)	17, 436, 455
Lsp1109I	GCAGC	3 cut(s)	59, 163, 397
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	2 cut(s)	104, 557
MalI	GATC	5 cut(s)	194, 204, 328, 507, 553
MbiI	CCGCTC	1 cut(s)	458
MboI	GATC	5 cut(s)	192, 202, 326, 505, 551
MboII	GAAGA	2 cut(s)	224, 350
MflI	RGATCY	1 cut(s)	551
MnlI	CCTC	8 cut(s)	25, 76, 109, 130, 247, 298, 537, 540
MseI	TTAA	3 cut(s)	90, 261, 380
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	1 cut(s)	434
MspR9I	CCNGG	1 cut(s)	435
MvnI	CGCG	1 cut(s)	251
MwoI	GCNNNNNNNGC	3 cut(s)	85, 185, 410
NciI	CCSGG	1 cut(s)	435
NcoI	CCATGG	1 cut(s)	585
NdeII	GATC	5 cut(s)	192, 202, 326, 505, 551
NlaIII	CATG	4 cut(s)	299, 390, 431, 589
NlaIV	GGNNCC	3 cut(s)	316, 358, 620
NmuCI	GTSAC	2 cut(s)	104, 557
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PkrI	GCNGC	4 cut(s)	49, 178, 412, 415
PpuMI	RGGWCCY	2 cut(s)	356, 619
Psp1406I	AACGTT	1 cut(s)	93
Psp5II	RGGWCCY	2 cut(s)	356, 619
PspFI	CCCAGC	1 cut(s)	179
PspN4I	GGNNCC	3 cut(s)	316, 358, 620
PspPI	GGNCC	2 cut(s)	356, 619
PspPPI	RGGWCCY	2 cut(s)	356, 619
PstI	CTGCAG	1 cut(s)	406
PstNI	CAGNNNCTG	1 cut(s)	410
PsuI	RGATCY	1 cut(s)	551
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
SacII	CCGCGG	1 cut(s)	252
SaqAI	TTAA	3 cut(s)	90, 261, 380
SatI	GCNGC	4 cut(s)	48, 177, 411, 414
Sau3AI	GATC	5 cut(s)	192, 202, 326, 505, 551
Sau96I	GGNCC	2 cut(s)	356, 619
ScaI	AGTACT	1 cut(s)	443
ScrFI	CCNGG	1 cut(s)	435
SetI	ASST	7 cut(s)	68, 75, 96, 320, 370, 574, 624
SfaNI	GCATC	1 cut(s)	252
SfcI	CTRYAG	2 cut(s)	363, 402
Sfr303I	CCGCGG	1 cut(s)	252
SgrBI	CCGCGG	1 cut(s)	252
SinI	GGWCC	2 cut(s)	356, 619
SsiI	CCGC	4 cut(s)	249, 251, 414, 458
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	433
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	3 cut(s)	168, 227, 637
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	1 cut(s)	195
TatI	WGTACW	1 cut(s)	441
TauI	GCSGC	1 cut(s)	416
Tru1I	TTAA	3 cut(s)	90, 261, 380
Tru9I	TTAA	3 cut(s)	90, 261, 380
TscAI	CASTG	1 cut(s)	640
TseFI	GTSAC	2 cut(s)	104, 557
TseI	GCWGC	3 cut(s)	47, 176, 410
Tsp45I	GTSAC	2 cut(s)	104, 557
TspDTI	ATGAA	4 cut(s)	225, 312, 416, 439
TspRI	CASTG	1 cut(s)	640
VpaK11BI	GGWCC	2 cut(s)	356, 619
XspI	CTAG	1 cut(s)	84
ZrmI	AGTACT	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.