Rorug04G0028800

Adagio protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004937
Physical Location & Seq
Reverse (-)
4016111 .. 4016815
705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0028800.1

Sequence Viewer

Length: 705 bp
ATGGACAGCAATTTCTCAGGGGCGATTGCAAAATTGAGAGGAGCGTCGGACGATGAGATCTCGATGGGGCAGCGCGGGGATTTGATGAAGCCCAATAGCTCCGAGGCCAAAACAAAGGTCTCATCCACTTCAACGCCTAGCGCCATTTTCGAAGACCCCCAGATTCGGAGCATCTTATTGCAGTCAGAACTCGAGGATGATGTGTCGGACGGTGATATCTCGGTCACCGATCATACTGACCTTTTCCTGGAGGAGCCAGATCGCCTCGGGAAAAAACCCGGCAAGGACATTGCACACCCCGCAAAACCAGACATCAGTGCTGCTGCTGCTGCAGCCAGTCTCAACCCTAAATTAGCCGCCCTTTCTCTGGGAAACAGAGGGAAACGGTTGTGCTCTGGACCAAAAGGTCGTATTTCTCGAAGGCGCAATCGAAAAGATAAGGGAGCGTCCATTGGTCTAGGCATCAAGTCCAAAGAACCAAAGGCTACTACTGGAGTATCAGACAAAAACAATAAAAAAGTGGCTGCAGTTGCTTCTTCTTCTACTTCTGTCGTCACCGAAAGAGGAGGGTTGCTTCTTCTTCTACTTCTGTCGTCACCGAAAGAGGAGGATGTCAGATCTGTGGCCATGATCACCACCAGCACATTCGTTGCCCATACTTGGAGTTGGTTCCACCTGGCGGAAGTGTTGGCCCTGACTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
F-box-like Kelch_2 Kelch_4 PAS_9

Protein Analysis

234

Amino Acids

24.82

Weight (kDa)

9.14

Isoelectric Point (pI)

34.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 405
AccII CGCG 1 cut(s) 75
AciI CCGC 4 cut(s) 75, 300, 357, 680
AcoI YGGCCR 1 cut(s) 624
AfiI CCNNNNNNNGG 5 cut(s) 165, 247, 367, 660, 679
AgsI TTSAA 1 cut(s) 132
AjnI CCWGG 2 cut(s) 246, 675
AluBI AGCT 1 cut(s) 99
AluI AGCT 1 cut(s) 99
Alw21I GWGCWC 1 cut(s) 395
Alw26I GTCTC 2 cut(s) 124, 344
Ama87I CYCGRG 2 cut(s) 191, 266
AoxI GGCC 3 cut(s) 105, 624, 690
ApeKI GCWGC 7 cut(s) 70, 320, 323, 326, 329, 332, 524
ArsI GACNNNNNNTTYG 2 cut(s) 102, 134
AspLEI GCGC 3 cut(s) 75, 143, 426
AspS9I GGNCC 2 cut(s) 398, 691
AsuC2I CCSGG 1 cut(s) 279
AsuHPI GGTGA 5 cut(s) 217, 224, 547, 588, 625
AsuII TTCGAA 1 cut(s) 150
AvaI CYCGRG 2 cut(s) 191, 266
AvaII GGWCC 1 cut(s) 398
BaeI ACNNNNGTAYC 2 cut(s) 480, 513
BalI TGGCCA 1 cut(s) 626
BbsI GAAGAC 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 395
BbvI GCAGC 7 cut(s) 82, 307, 310, 313, 316, 344, 511
BccI CCATC 1 cut(s) 58
BciT130I CCWGG 2 cut(s) 248, 677
BclI TGATCA 1 cut(s) 630
BcnI CCSGG 1 cut(s) 279
BcoDI GTCTC 2 cut(s) 124, 344
BfaI CTAG 3 cut(s) 138, 458, 703
BfmI CTRYAG 2 cut(s) 330, 525
BfoI RGCGCY 1 cut(s) 144
BglII AGATCT 2 cut(s) 57, 617
BisI GCNGC 8 cut(s) 71, 321, 324, 327, 330, 333, 357, 525
BlsI GCNGC 8 cut(s) 72, 322, 325, 328, 331, 334, 358, 526
Bme1390I CCNGG 3 cut(s) 248, 279, 677
Bme18I GGWCC 1 cut(s) 398
BmeT110I CYCGRG 2 cut(s) 191, 266
BmgT120I GGNCC 2 cut(s) 398, 691
BmiI GGNNCC 2 cut(s) 255, 671
BmrFI CCNGG 3 cut(s) 248, 279, 677
BmsI GCATC 2 cut(s) 180, 471
BpiI GAAGAC 1 cut(s) 159
BpmI CTGGAG 2 cut(s) 269, 513
Bpu14I TTCGAA 1 cut(s) 150
BpuMI CCSGG 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 124
BsaJI CCNNGG 2 cut(s) 102, 265
Bsc4I CCNNNNNNNGG 5 cut(s) 165, 247, 367, 660, 679
Bse1I ACTGG 2 cut(s) 336, 496
Bse3DI GCAATG 1 cut(s) 288
BseBI CCWGG 2 cut(s) 248, 677
BseDI CCNNGG 2 cut(s) 102, 265
BseGI GGATG 3 cut(s) 122, 202, 616
BseLI CCNNNNNNNGG 5 cut(s) 165, 247, 367, 660, 679
BseMI GCAATG 1 cut(s) 288
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 2 cut(s) 336, 496
BseRI GAGGAG 4 cut(s) 54, 266, 579, 620
BseXI GCAGC 7 cut(s) 82, 307, 310, 313, 316, 344, 511
Bsh1236I CGCG 1 cut(s) 75
BshFI GGCC 3 cut(s) 107, 626, 692
BsiHKAI GWGCWC 1 cut(s) 395
BsiHKCI CYCGRG 2 cut(s) 191, 266
BsiSI CCGG 1 cut(s) 279
BslI CCNNNNNNNGG 5 cut(s) 165, 247, 367, 660, 679
BsmAI GTCTC 2 cut(s) 124, 344
BsnI GGCC 3 cut(s) 107, 626, 692
Bso31I GGTCTC 1 cut(s) 124
BsoBI CYCGRG 2 cut(s) 191, 266
Bsp119I TTCGAA 1 cut(s) 150
Bsp1286I GDGCHC 1 cut(s) 395
Bsp143I GATC 5 cut(s) 57, 229, 259, 617, 630
BspACI CCGC 4 cut(s) 75, 300, 357, 680
BspANI GGCC 3 cut(s) 107, 626, 692
BspCNI CTCAG 1 cut(s) 29
BspFNI CGCG 1 cut(s) 75
BspLI GGNNCC 2 cut(s) 255, 671
BspMAI CTGCAG 2 cut(s) 334, 529
BspT104I TTCGAA 1 cut(s) 150
BspTNI GGTCTC 1 cut(s) 124
BsrDI GCAATG 1 cut(s) 288
BsrI ACTGG 2 cut(s) 336, 496
BssECI CCNNGG 2 cut(s) 102, 265
BssMI GATC 5 cut(s) 57, 229, 259, 617, 630
Bst2UI CCWGG 2 cut(s) 248, 677
Bst4CI ACNGT 2 cut(s) 212, 387
BstBI TTCGAA 1 cut(s) 150
BstDEI CTNAG 1 cut(s) 16
BstEII GGTNACC 1 cut(s) 223
BstF5I GGATG 3 cut(s) 122, 202, 616
BstFNI CGCG 1 cut(s) 75
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 3 cut(s) 75, 143, 426
BstKTI GATC 5 cut(s) 60, 232, 262, 620, 633
BstMAI GTCTC 2 cut(s) 124, 344
BstMBI GATC 5 cut(s) 57, 229, 259, 617, 630
BstMWI GCNNNNNNNGC 5 cut(s) 299, 326, 329, 332, 530
BstNI CCWGG 2 cut(s) 248, 677
BstPI GGTNACC 1 cut(s) 223
BstSCI CCNGG 3 cut(s) 246, 277, 675
BstSFI CTRYAG 2 cut(s) 330, 525
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 7 cut(s) 82, 307, 310, 313, 316, 344, 511
BstV2I GAAGAC 1 cut(s) 159
BstX2I RGATCY 2 cut(s) 57, 617
BstYI RGATCY 2 cut(s) 57, 617
BsuRI GGCC 3 cut(s) 107, 626, 692
BtsCI GGATG 3 cut(s) 122, 202, 616
BtsIMutI CAGTG 1 cut(s) 322
CfoI GCGC 3 cut(s) 75, 143, 426
Cfr13I GGNCC 2 cut(s) 398, 691
CseI GACGC 2 cut(s) 33, 435
CviAII CATG 1 cut(s) 628
DdeI CTNAG 1 cut(s) 16
DpnI GATC 5 cut(s) 59, 231, 261, 619, 632
DpnII GATC 5 cut(s) 57, 229, 259, 617, 630
DrdI GACNNNNNNGTC 1 cut(s) 405
DseDI GACNNNNNNGTC 1 cut(s) 405
EaeI YGGCCR 1 cut(s) 624
EciI GGCGGA 1 cut(s) 695
Eco31I GGTCTC 1 cut(s) 124
Eco32I GATATC 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 398
Eco88I CYCGRG 2 cut(s) 191, 266
Eco91I GGTNACC 1 cut(s) 223
EcoO65I GGTNACC 1 cut(s) 223
EcoRII CCWGG 2 cut(s) 246, 675
EcoRV GATATC 1 cut(s) 217
FaeI CATG 1 cut(s) 631
FaiI YATR 3 cut(s) 234, 629, 657
FatI CATG 1 cut(s) 627
FauI CCCGC 2 cut(s) 68, 307
FbaI TGATCA 1 cut(s) 630
Fnu4HI GCNGC 8 cut(s) 71, 321, 324, 327, 330, 333, 357, 525
FokI GGATG 3 cut(s) 109, 209, 623
Fsp4HI GCNGC 8 cut(s) 71, 321, 324, 327, 330, 333, 357, 525
FspBI CTAG 3 cut(s) 138, 458, 703
GlaI GCGC 3 cut(s) 74, 142, 425
GluI GCNGC 8 cut(s) 71, 321, 324, 327, 330, 333, 357, 525
GsuI CTGGAG 2 cut(s) 269, 513
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 3 cut(s) 107, 626, 692
HapII CCGG 1 cut(s) 279
HgaI GACGC 2 cut(s) 33, 435
HhaI GCGC 3 cut(s) 75, 143, 426
Hin1II CATG 1 cut(s) 631
Hin6I GCGC 3 cut(s) 73, 141, 424
HinP1I GCGC 3 cut(s) 73, 141, 424
HinfI GANTC 1 cut(s) 163
HpaII CCGG 1 cut(s) 279
HphI GGTGA 5 cut(s) 217, 224, 547, 588, 625
Hpy188I TCNGA 7 cut(s) 49, 103, 168, 187, 208, 502, 617
Hpy188III TCNNGA 4 cut(s) 61, 268, 396, 417
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 1 cut(s) 414
HpyCH4III ACNGT 2 cut(s) 212, 387
HpyCH4V TGCA 5 cut(s) 29, 181, 293, 332, 527
HpyF10VI GCNNNNNNNGC 5 cut(s) 299, 326, 329, 332, 530
HpyF3I CTNAG 1 cut(s) 16
Hsp92II CATG 1 cut(s) 631
HspAI GCGC 3 cut(s) 73, 141, 424
Ksp22I TGATCA 1 cut(s) 630
Kzo9I GATC 5 cut(s) 57, 229, 259, 617, 630
LmnI GCTCC 5 cut(s) 41, 104, 168, 253, 443
Lsp1109I GCAGC 7 cut(s) 82, 307, 310, 313, 316, 344, 511
LweI GCATC 2 cut(s) 180, 471
MaeI CTAG 3 cut(s) 138, 458, 703
MaeIII GTNAC 3 cut(s) 223, 553, 594
MalI GATC 5 cut(s) 59, 231, 261, 619, 632
MboI GATC 5 cut(s) 57, 229, 259, 617, 630
MboII GAAGA 5 cut(s) 164, 528, 531, 569, 572
MflI RGATCY 2 cut(s) 57, 617
MhlI GDGCHC 1 cut(s) 395
MlsI TGGCCA 1 cut(s) 626
MluCI AATT 3 cut(s) 10, 32, 350
MluNI TGGCCA 1 cut(s) 626
MmeI TCCRAC 2 cut(s) 27, 186
Mox20I TGGCCA 1 cut(s) 626
MscI TGGCCA 1 cut(s) 626
Msp20I TGGCCA 1 cut(s) 626
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 3 cut(s) 248, 279, 677
MvaI CCWGG 2 cut(s) 248, 677
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 5 cut(s) 299, 326, 329, 332, 530
NciI CCSGG 1 cut(s) 279
NdeII GATC 5 cut(s) 57, 229, 259, 617, 630
NlaIII CATG 1 cut(s) 631
NlaIV GGNNCC 2 cut(s) 255, 671
NmuCI GTSAC 3 cut(s) 223, 553, 594
NspV TTCGAA 1 cut(s) 150
PaeR7I CTCGAG 1 cut(s) 191
PcsI WCGNNNNNNNCGW 1 cut(s) 415
PfeI GAWTC 1 cut(s) 163
PfoI TCCNGGA 1 cut(s) 246
PkrI GCNGC 8 cut(s) 72, 322, 325, 328, 331, 334, 358, 526
Psp6I CCWGG 2 cut(s) 246, 675
PspEI GGTNACC 1 cut(s) 223
PspGI CCWGG 2 cut(s) 246, 675
PspN4I GGNNCC 2 cut(s) 255, 671
PspPI GGNCC 2 cut(s) 398, 691
PspXI VCTCGAGB 1 cut(s) 191
PstI CTGCAG 2 cut(s) 334, 529
PsuI RGATCY 2 cut(s) 57, 617
SatI GCNGC 8 cut(s) 71, 321, 324, 327, 330, 333, 357, 525
Sau3AI GATC 5 cut(s) 57, 229, 259, 617, 630
Sau96I GGNCC 2 cut(s) 398, 691
ScrFI CCNGG 3 cut(s) 248, 279, 677
SduI GDGCHC 1 cut(s) 395
SetI ASST 5 cut(s) 101, 120, 243, 409, 678
SfaNI GCATC 2 cut(s) 180, 471
SfcI CTRYAG 2 cut(s) 330, 525
Sfr274I CTCGAG 1 cut(s) 191
SfuI TTCGAA 1 cut(s) 150
SinI GGWCC 1 cut(s) 398
SlaI CTCGAG 1 cut(s) 191
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 3 cut(s) 10, 32, 350
SsiI CCGC 4 cut(s) 75, 300, 357, 680
SspMI CTAG 3 cut(s) 138, 458, 703
StyD4I CCNGG 3 cut(s) 246, 277, 675
TaaI ACNGT 2 cut(s) 212, 387
TaqI TCGA 5 cut(s) 62, 150, 192, 418, 430
TaqII GACCGA 1 cut(s) 211
TasI AATT 3 cut(s) 10, 32, 350
TauI GCSGC 1 cut(s) 359
TfiI GAWTC 1 cut(s) 163
TscAI CASTG 1 cut(s) 322
TseFI GTSAC 3 cut(s) 223, 553, 594
TseI GCWGC 7 cut(s) 70, 320, 323, 326, 329, 332, 524
Tsp45I GTSAC 3 cut(s) 223, 553, 594
TspDTI ATGAA 1 cut(s) 101
TspRI CASTG 1 cut(s) 322
VpaK11BI GGWCC 1 cut(s) 398
XhoI CTCGAG 1 cut(s) 191
XspI CTAG 3 cut(s) 138, 458, 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.