Rorug04G0179000
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0010022
Physical Location & Seq
Forward (+)
31429820 .. 31430438
619 bp
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UTR
Exon/CDS
Intron
Rorug04G0179000.1

Sequence Viewer

Length: 384 bp
ATGCAAGGCCAAACAGCTTTCAAGCTTCTTCTCTGGACGTCTCTTACTTTTGCATCTCTTCTCTGCCATGGATGGGAAGAAAAATGTACTACAAATGATCATGCCCCAACTGTGCAACAGTCTCAAGTAGGGTTTGGAAGCTCTCCAACATTCATGGTGGAAGTGCAAAACAACTGCCCAATGTGTCCAGTTATCAACCTTCATTTGAAGTGCGGAAGCTTTCCTCAAGCTCTGGTCAATCCCAGGCTACTCAAGGTTTTAAGCAACAACGACTGTGTAGTTAATAGTGGTTTACCATTGGCACCTCTGCAAAAGATTTCCTTCAATTATTCTCACCAAATGTATCTGATGTCTCCTAAAATCTGGTATTTCCAGTGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009628 GO:0009651 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009987 GO:0010035 GO:0010038 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016273 GO:0016274 GO:0016277 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019919 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032259 GO:0032501 GO:0032502 GO:0034969 GO:0034970 GO:0034971 GO:0034972 GO:0035241 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0046686 GO:0046982 GO:0046983 GO:0048518 GO:0048522 GO:0048580 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0140096 GO:1901564 GO:1902680 GO:1902882 GO:1902884 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko01522 map01522
Pfam Domains
Protein Families
Methyltransf_25 PrmA

Protein Analysis

127

Amino Acids

14.28

Weight (kDa)

7.6

Isoelectric Point (pI)

44.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 38 - 115 1.9e-19 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 41
AccB1I GGYRCC 1 cut(s) 301
AciI CCGC 1 cut(s) 213
AcyI GRCGYC 1 cut(s) 38
AfaI GTAC 1 cut(s) 88
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 3 cut(s) 22, 208, 325
AjnI CCWGG 1 cut(s) 242
AluBI AGCT 5 cut(s) 17, 25, 141, 219, 230
AluI AGCT 5 cut(s) 17, 25, 141, 219, 230
Alw26I GTCTC 3 cut(s) 45, 126, 357
AoxI GGCC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 326
BanI GGYRCC 1 cut(s) 301
BccI CCATC 1 cut(s) 66
BciT130I CCWGG 1 cut(s) 244
BclI TGATCA 1 cut(s) 97
BcoDI GTCTC 3 cut(s) 45, 126, 357
Bme1390I CCNGG 1 cut(s) 244
BmiI GGNNCC 1 cut(s) 303
BmrFI CCNGG 1 cut(s) 244
BmsI GCATC 1 cut(s) 62
BpuEI CTTGAG 3 cut(s) 108, 210, 236
BsaHI GRCGYC 1 cut(s) 38
BsaJI CCNNGG 2 cut(s) 67, 242
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse1I ACTGG 2 cut(s) 188, 373
BseBI CCWGG 1 cut(s) 244
BseDI CCNNGG 2 cut(s) 67, 242
BseGI GGATG 1 cut(s) 77
BseLI CCNNNNNNNGG 1 cut(s) 73
BseNI ACTGG 2 cut(s) 188, 373
BshFI GGCC 1 cut(s) 9
BshNI GGYRCC 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 3 cut(s) 45, 126, 357
BsmBI CGTCTC 1 cut(s) 45
BsnI GGCC 1 cut(s) 9
Bsp143I GATC 1 cut(s) 97
Bsp19I CCATGG 1 cut(s) 67
BspACI CCGC 1 cut(s) 213
BspANI GGCC 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 303
BspT107I GGYRCC 1 cut(s) 301
BsrI ACTGG 2 cut(s) 188, 373
BssECI CCNNGG 2 cut(s) 67, 242
BssMI GATC 1 cut(s) 97
BssNI GRCGYC 1 cut(s) 38
BssT1I CCWWGG 1 cut(s) 67
Bst2UI CCWGG 1 cut(s) 244
Bst4CI ACNGT 3 cut(s) 112, 120, 275
Bst6I CTCTTC 1 cut(s) 63
BstACI GRCGYC 1 cut(s) 38
BstDSI CCRYGG 1 cut(s) 67
BstF5I GGATG 1 cut(s) 77
BstKTI GATC 1 cut(s) 100
BstMAI GTCTC 3 cut(s) 45, 126, 357
BstMBI GATC 1 cut(s) 97
BstNI CCWGG 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 242
BsuRI GGCC 1 cut(s) 9
BtgI CCRYGG 1 cut(s) 67
BtsCI GGATG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 380
Csp6I GTAC 1 cut(s) 87
CviAII CATG 3 cut(s) 68, 101, 154
CviJI RGCY 7 cut(s) 9, 17, 25, 141, 219, 230, 247
CviKI_1 RGCY 7 cut(s) 9, 17, 25, 141, 219, 230, 247
CviQI GTAC 1 cut(s) 87
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 242
EcoT14I CCWWGG 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 67
Esp3I CGTCTC 1 cut(s) 45
FaeI CATG 3 cut(s) 71, 104, 157
FaiI YATR 3 cut(s) 69, 102, 155
FalI AAGNNNNNCTT 2 cut(s) 305, 337
FatI CATG 3 cut(s) 67, 100, 153
FbaI TGATCA 1 cut(s) 97
FokI GGATG 1 cut(s) 84
HaeIII GGCC 1 cut(s) 9
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 3 cut(s) 71, 104, 157
HindIII AAGCTT 2 cut(s) 23, 217
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 1 cut(s) 293
Hpy188I TCNGA 1 cut(s) 348
Hpy188III TCNNGA 1 cut(s) 34
Hpy8I GTNNAC 1 cut(s) 293
HpyAV CCTTC 2 cut(s) 209, 331
HpyCH4III ACNGT 3 cut(s) 112, 120, 275
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 5 cut(s) 4, 53, 115, 166, 310
HpySE526I ACGT 1 cut(s) 38
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 3 cut(s) 71, 104, 157
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 1 cut(s) 97
LpnPI CCDG 6 cut(s) 19, 201, 218, 229, 256, 349
LweI GCATC 1 cut(s) 62
MaeII ACGT 1 cut(s) 38
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 3 cut(s) 20, 50, 89
MluCI AATT 1 cut(s) 325
MmeI TCCRAC 1 cut(s) 170
MnlI CCTC 2 cut(s) 234, 315
MseI TTAA 2 cut(s) 260, 282
MspR9I CCNGG 1 cut(s) 244
MvaI CCWGG 1 cut(s) 244
NcoI CCATGG 1 cut(s) 67
NdeII GATC 1 cut(s) 97
NlaIII CATG 3 cut(s) 71, 104, 157
NlaIV GGNNCC 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 242
PspGI CCWGG 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 303
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
SaqAI TTAA 2 cut(s) 260, 282
Sau3AI GATC 1 cut(s) 97
ScrFI CCNGG 1 cut(s) 244
SetI ASST 9 cut(s) 19, 27, 41, 143, 201, 221, 232, 258, 307
SfaNI GCATC 1 cut(s) 62
SmlI CTYRAG 3 cut(s) 123, 225, 251
SmoI CTYRAG 3 cut(s) 123, 225, 251
Sse9I AATT 1 cut(s) 325
SsiI CCGC 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 242
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 3 cut(s) 112, 120, 275
TaiI ACGT 1 cut(s) 41
TasI AATT 1 cut(s) 325
TatI WGTACW 1 cut(s) 86
Tru1I TTAA 2 cut(s) 260, 282
Tru9I TTAA 2 cut(s) 260, 282
TscAI CASTG 1 cut(s) 380
TspDTI ATGAA 2 cut(s) 142, 191
TspRI CASTG 1 cut(s) 380
ZraI GACGTC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.