Rorug04G0297800

WPP domain-interacting tail-anchored protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0003026
Physical Location & Seq
Forward (+)
47276736 .. 47280297
3562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0297800.1

Sequence Viewer

Length: 396 bp
ATGGAATCTATTAGCTACGACTCATTCAATTCTAATCTCTATGATCCTCTGATGGGGAGTGATGTTAATTCTCTTAGAGTGGGATCTGAGAAGCATTTTGAAACGGGAGGAAACCAAGAAACTATGCCGTCTCTGCAAACCGCCTTGCCTCCTGAGCTCGCTAACAATGTGATCAGACTTTACCGTGAGTGTATTCGGAGAGCTAAATATGTCGGTCATCGGCAACACAATACACAACTTGTTGTTGACATGGTGCGGCAGCAGTTCAAAAAAAATATGCATGAGACCGATCCAGATAAGATTCAAAAGTTCAAGGATGACGCTGCAAGGGGACTTATAAATCACATACTTTTCGAGTCGGAGAAGATGTCTGGTCGTAAATTCAGCAAGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0008360 GO:0022603 GO:0022604 GO:0032878 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0065007 GO:0065008 GO:2000769
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

15.12

Weight (kDa)

8.71

Isoelectric Point (pI)

52.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 57 - 110 7.3e-10 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 338
AciI CCGC 2 cut(s) 141, 256
AclWI GGATC 3 cut(s) 38, 91, 284
AcsI RAATTY 1 cut(s) 380
AfiI CCNNNNNNNGG 1 cut(s) 53
AgsI TTSAA 5 cut(s) 28, 101, 268, 305, 313
AluBI AGCT 4 cut(s) 15, 157, 203, 393
AluI AGCT 4 cut(s) 15, 157, 203, 393
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 2 cut(s) 135, 278
AlwI GGATC 3 cut(s) 38, 91, 284
ApeKI GCWGC 2 cut(s) 259, 323
ApoI RAATTY 1 cut(s) 380
BanII GRGCYC 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 159
BbvI GCAGC 2 cut(s) 271, 310
BccI CCATC 1 cut(s) 46
BceAI ACGGC 1 cut(s) 112
BclI TGATCA 1 cut(s) 171
BcoDI GTCTC 2 cut(s) 135, 278
BfaI CTAG 1 cut(s) 394
BisI GCNGC 3 cut(s) 257, 260, 324
BlsI GCNGC 3 cut(s) 258, 261, 325
Bpu10I CCTNAGC 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 278
BsaXI ACNNNNNCTCC 2 cut(s) 353, 383
Bsc4I CCNNNNNNNGG 1 cut(s) 53
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 2 cut(s) 78, 144
BseXI GCAGC 2 cut(s) 271, 310
BsiHKAI GWGCWC 1 cut(s) 159
BslFI GGGAC 1 cut(s) 345
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 2 cut(s) 135, 278
BsmBI CGTCTC 1 cut(s) 135
BsmFI GGGAC 1 cut(s) 345
Bso31I GGTCTC 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 4 cut(s) 43, 83, 171, 289
BspACI CCGC 2 cut(s) 141, 256
BspCNI CTCAG 2 cut(s) 79, 145
BspPI GGATC 3 cut(s) 38, 91, 284
BspTNI GGTCTC 1 cut(s) 278
BssMI GATC 4 cut(s) 43, 83, 171, 289
Bst4CI ACNGT 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 3 cut(s) 74, 87, 153
BstF5I GGATG 1 cut(s) 322
BstKTI GATC 4 cut(s) 46, 86, 174, 292
BstMAI GTCTC 2 cut(s) 135, 278
BstMBI GATC 4 cut(s) 43, 83, 171, 289
BstMWI GCNNNNNNNGC 2 cut(s) 133, 154
BstV1I GCAGC 2 cut(s) 271, 310
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
BtsCI GGATG 1 cut(s) 322
Cac8I GCNNGC 1 cut(s) 159
CseI GACGC 1 cut(s) 329
CviAII CATG 2 cut(s) 250, 281
CviJI RGCY 4 cut(s) 15, 157, 203, 393
CviKI_1 RGCY 4 cut(s) 15, 157, 203, 393
DdeI CTNAG 3 cut(s) 74, 87, 153
DpnI GATC 4 cut(s) 45, 85, 173, 291
DpnII GATC 4 cut(s) 43, 83, 171, 289
Ecl136II GAGCTC 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 278
Eco53kI GAGCTC 1 cut(s) 157
EcoICRI GAGCTC 1 cut(s) 157
EcoT22I ATGCAT 1 cut(s) 282
EcoT38I GRGCYC 1 cut(s) 159
Esp3I CGTCTC 1 cut(s) 135
FaeI CATG 2 cut(s) 253, 284
FaiI YATR 8 cut(s) 42, 125, 210, 251, 278, 282, 338, 347
FaqI GGGAC 1 cut(s) 345
FatI CATG 2 cut(s) 249, 280
FbaI TGATCA 1 cut(s) 171
Fnu4HI GCNGC 3 cut(s) 257, 260, 324
FokI GGATG 1 cut(s) 329
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 3 cut(s) 257, 260, 324
FspBI CTAG 1 cut(s) 394
GluI GCNGC 3 cut(s) 257, 260, 324
HgaI GACGC 1 cut(s) 329
Hin1II CATG 2 cut(s) 253, 284
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 4 cut(s) 5, 20, 301, 356
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 5 cut(s) 51, 88, 176, 198, 361
Hpy188III TCNNGA 2 cut(s) 152, 293
Hpy8I GTNNAC 1 cut(s) 247
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4V TGCA 3 cut(s) 136, 280, 326
HpyF10VI GCNNNNNNNGC 2 cut(s) 133, 154
HpyF3I CTNAG 3 cut(s) 74, 87, 153
Hsp92II CATG 2 cut(s) 253, 284
Ksp22I TGATCA 1 cut(s) 171
Kzo9I GATC 4 cut(s) 43, 83, 171, 289
LpnPI CCDG 3 cut(s) 165, 306, 357
Lsp1109I GCAGC 2 cut(s) 271, 310
MaeI CTAG 1 cut(s) 394
MalI GATC 4 cut(s) 45, 85, 173, 291
MboI GATC 4 cut(s) 43, 83, 171, 289
MboII GAAGA 1 cut(s) 376
MflI RGATCY 1 cut(s) 83
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 3 cut(s) 28, 67, 380
MlyI GAGTC 2 cut(s) 14, 365
MmeI TCCRAC 1 cut(s) 339
MnlI CCTC 3 cut(s) 57, 101, 159
Mph1103I ATGCAT 1 cut(s) 282
MseI TTAA 1 cut(s) 66
MwoI GCNNNNNNNGC 2 cut(s) 133, 154
NdeII GATC 4 cut(s) 43, 83, 171, 289
NlaIII CATG 2 cut(s) 253, 284
NsiI ATGCAT 1 cut(s) 282
PfeI GAWTC 2 cut(s) 5, 301
PkrI GCNGC 3 cut(s) 258, 261, 325
PleI GAGTC 2 cut(s) 14, 364
PpsI GAGTC 2 cut(s) 14, 364
PsiI TTATAA 1 cut(s) 338
Psp124BI GAGCTC 1 cut(s) 159
PsuI RGATCY 1 cut(s) 83
SacI GAGCTC 1 cut(s) 159
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 3 cut(s) 257, 260, 324
Sau3AI GATC 4 cut(s) 43, 83, 171, 289
SchI GAGTC 2 cut(s) 14, 365
SduI GDGCHC 1 cut(s) 159
SetI ASST 4 cut(s) 17, 159, 205, 395
Sse9I AATT 3 cut(s) 28, 67, 380
SsiI CCGC 2 cut(s) 141, 256
SspMI CTAG 1 cut(s) 394
SstI GAGCTC 1 cut(s) 159
TaaI ACNGT 1 cut(s) 185
TaqI TCGA 1 cut(s) 354
TaqII GACCGA 2 cut(s) 203, 302
TasI AATT 3 cut(s) 28, 67, 380
TauI GCSGC 1 cut(s) 259
TfiI GAWTC 2 cut(s) 5, 301
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TseI GCWGC 2 cut(s) 259, 323
XapI RAATTY 1 cut(s) 380
XspI CTAG 1 cut(s) 394
Zsp2I ATGCAT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.