Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007021

Physical Location & Seq

Genomic Coordinates Forward (+)

56315583 .. 56318063

Gene Structure 2481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0396900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAAAATGGCTTCTGCTGTGTTTTTCTTGGTGGGTCTTCTTGCAATGGTGACCTGTGCGCATGCTTATGGTGGTGGTGGTGGTTGGGTTAACGCTCGTGCCACTTTCTATGGTGGTGGTGATGCTTCTGGAACAATGGGTGGTGCTTGTGGGTATGGAAACCTCTACAGCCAGGGGTATGGTACAAACACTGCTGCTCTGAGCACTGCTCTGTTCAACAATGGGCTGGGATGTGGGTCTTGCTATGAAATTAGGTGTGTGAATGACCCAAAATGGTGCCTTCCCGGCTCCATTGTGGTCACAGCCACTAATTTCTGCCCTCCAAACAATGCCCTACCTAACAATGCTGGGGGATGGTGCAACCCTCCTCAGCATCACTTTGACCTCTCTCAACCTGTATTCCAGCACATTGCTCAATACAAAGCTGGAGTTGTCCCTGTTTCTTACAGAAGGGTACCCTGCAGCAGAAGGGGAGGCATCCGATTCACCATCAATGGCCACTCCTACTTCAACCTGGTTTTGATCACAAACGTTGGTGGTGCTGGTGATGTGCACTCTGTTTCAGTCAAAGGGTCCAGAACCGGTTGGCAACCAATGTCCAGAAACTGGGGGCAAAACTGGCAAAGCAACTCATATCTGAATGGGCAAGCCCTATCCTTCAAGGTCACAACCAGTGATGGCCGCACTGTGGTGTCCTACAATGCTGCCCCAGCTCGTTGGTCCTTTGGCCAGACCTTCAGTGGTGCCCAGTTCCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010033 GO:0010036 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016036 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042221 GO:0042493 GO:0042594 GO:0044212 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071496 GO:0080029 GO:0080090 GO:0080169 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

252

Amino Acids

26.79

Weight (kDa)

9.43

Isoelectric Point (pI)

34.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	33 - 156	9.3e-10	EXPB1-like domain 1
DPBB_1	PF03330	64 - 149	9.3e-24	Lytic transglycolase
Expansin_C	PF01357	160 - 237	1e-33	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62300 AT4G04450 AT4G04450 AT4G22070 AT4G22070 AT4G22070 AT4G22070
fragaria_vesca	FvH4_3g01700 FvH4_3g01700
malus_domestica	MD05G1349800.v1.1 MD10G1324500.v1.1
prunus_persica	Prupe.4G017600_v2.0.a1 Prupe.4G017600_v2.0.a1
pyrus_communis	pycom05g31740 pycom10g27490
rosa_chinensis	RchiOBHm_Chr5g0002561
rosa_laevigata	RLG00000031039
rosa_multiflora	Rmu_sc0010731.1_g000002
rosa_roxburghii	Rroxscaffold_1G00073350
rosa_rugosa	Rorug04G0396900
rosa_samantha	Rh5AG020300 Rh5BG023000 Rh5CG022300 Rh5DG021400
rosa_wichuraiana	Rw5G001870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	60
Acc65I	GGTACC	1 cut(s)	454
AccB1I	GGYRCC	3 cut(s)	276, 454, 743
AccB7I	CCANNNNNTGG	1 cut(s)	606
AciI	CCGC	2 cut(s)	682, 754
AclI	AACGTT	1 cut(s)	531
AcoI	YGGCCR	3 cut(s)	496, 679, 727
AcuI	CTGAAG	1 cut(s)	721
AfaI	GTAC	2 cut(s)	184, 456
AfiI	CCNNNNNNNGG	2 cut(s)	606, 688
AgeI	ACCGGT	1 cut(s)	581
AgsI	TTSAA	3 cut(s)	217, 511, 661
AjnI	CCWGG	2 cut(s)	171, 513
AleI	CACNNNNGTG	1 cut(s)	689
AluBI	AGCT	2 cut(s)	425, 713
AluI	AGCT	2 cut(s)	425, 713
Alw21I	GWGCWC	2 cut(s)	206, 555
Alw44I	GTGCAC	1 cut(s)	551
AlwNI	CAGNNNCTG	1 cut(s)	606
AoxI	GGCC	3 cut(s)	496, 679, 727
ApaLI	GTGCAC	1 cut(s)	551
ApeKI	GCWGC	3 cut(s)	194, 462, 704
AsiGI	ACCGGT	1 cut(s)	581
Asp718I	GGTACC	1 cut(s)	454
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	2 cut(s)	573, 720
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	4 cut(s)	61, 131, 478, 557
AvaII	GGWCC	2 cut(s)	573, 720
BaeGI	GKGCMC	2 cut(s)	555, 748
BalI	TGGCCA	2 cut(s)	498, 729
BanI	GGYRCC	3 cut(s)	276, 454, 743
BauI	CACGAG	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	29
Bbv12I	GWGCWC	2 cut(s)	206, 555
BbvCI	CCTCAGC	1 cut(s)	369
BbvI	GCAGC	3 cut(s)	181, 474, 691
BccI	CCATC	3 cut(s)	348, 497, 671
BciT130I	CCWGG	2 cut(s)	173, 515
BclI	TGATCA	1 cut(s)	522
BcnI	CCSGG	1 cut(s)	285
BfmI	CTRYAG	2 cut(s)	166, 460
BglI	GCCNNNNNGGC	1 cut(s)	285
BisI	GCNGC	4 cut(s)	195, 463, 682, 705
BlsI	GCNGC	4 cut(s)	196, 464, 683, 706
Bme1390I	CCNGG	3 cut(s)	173, 285, 515
Bme18I	GGWCC	2 cut(s)	573, 720
BmgT120I	GGNCC	2 cut(s)	573, 720
BmiI	GGNNCC	5 cut(s)	278, 289, 456, 574, 745
BmrFI	CCNGG	3 cut(s)	173, 285, 515
BmrI	ACTGGG	2 cut(s)	616, 742
BmsI	GCATC	3 cut(s)	112, 382, 486
BmuI	ACTGGG	2 cut(s)	616, 742
BpiI	GAAGAC	1 cut(s)	29
BplI	GAGNNNNNCTC	2 cut(s)	193, 225
BpmI	CTGGAG	1 cut(s)	447
Bpu10I	CCTNAGC	1 cut(s)	369
BpuMI	CCSGG	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	172
BsaWI	WCCGGW	1 cut(s)	581
Bsc4I	CCNNNNNNNGG	2 cut(s)	606, 688
Bse118I	RCCGGY	1 cut(s)	581
Bse1I	ACTGG	4 cut(s)	611, 623, 672, 748
Bse3DI	GCAATG	2 cut(s)	51, 408
BseBI	CCWGG	2 cut(s)	173, 515
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	3 cut(s)	236, 359, 477
BseLI	CCNNNNNNNGG	2 cut(s)	606, 688
BseMI	GCAATG	2 cut(s)	51, 408
BseMII	CTCAG	2 cut(s)	191, 383
BseNI	ACTGG	4 cut(s)	611, 623, 672, 748
BseRI	GAGGAG	1 cut(s)	357
BseSI	GKGCMC	2 cut(s)	555, 748
BseXI	GCAGC	3 cut(s)	181, 474, 691
BseYI	CCCAGC	3 cut(s)	226, 347, 709
BshFI	GGCC	3 cut(s)	498, 681, 729
BshNI	GGYRCC	3 cut(s)	276, 454, 743
BshTI	ACCGGT	1 cut(s)	581
BsiHKAI	GWGCWC	2 cut(s)	206, 555
BsiSI	CCGG	2 cut(s)	285, 582
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	2 cut(s)	606, 688
BsmFI	GGGAC	1 cut(s)	419
BsnI	GGCC	3 cut(s)	498, 681, 729
Bsp1286I	GDGCHC	3 cut(s)	206, 555, 748
Bsp143I	GATC	1 cut(s)	522
BspACI	CCGC	2 cut(s)	682, 754
BspANI	GGCC	3 cut(s)	498, 681, 729
BspCNI	CTCAG	2 cut(s)	192, 382
BspLI	GGNNCC	5 cut(s)	278, 289, 456, 574, 745
BspMAI	CTGCAG	1 cut(s)	464
BspT107I	GGYRCC	3 cut(s)	276, 454, 743
BsrDI	GCAATG	2 cut(s)	51, 408
BsrFI	RCCGGY	1 cut(s)	581
BsrI	ACTGG	4 cut(s)	611, 623, 672, 748
BssAI	RCCGGY	1 cut(s)	581
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	1 cut(s)	522
BssSI	CACGAG	1 cut(s)	96
Bst2BI	CACGAG	1 cut(s)	96
Bst2UI	CCWGG	2 cut(s)	173, 515
Bst4CI	ACNGT	1 cut(s)	688
BstC8I	GCNNGC	2 cut(s)	63, 648
BstDEI	CTNAG	2 cut(s)	200, 369
BstEII	GGTNACC	1 cut(s)	49
BstF5I	GGATG	3 cut(s)	236, 359, 477
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	1 cut(s)	525
BstMBI	GATC	1 cut(s)	522
BstMWI	GCNNNNNNNGC	3 cut(s)	285, 619, 710
BstNI	CCWGG	2 cut(s)	173, 515
BstNSI	RCATGY	1 cut(s)	65
BstPI	GGTNACC	1 cut(s)	49
BstSCI	CCNGG	3 cut(s)	171, 283, 513
BstSFI	CTRYAG	2 cut(s)	166, 460
BstSLI	GKGCMC	2 cut(s)	555, 748
BstV1I	GCAGC	3 cut(s)	181, 474, 691
BstV2I	GAAGAC	1 cut(s)	29
BstXI	CCANNNNNNTGG	2 cut(s)	179, 717
BsuRI	GGCC	3 cut(s)	498, 681, 729
BtsCI	GGATG	3 cut(s)	236, 359, 477
BtsI	GCAGTG	2 cut(s)	189, 204
BtsIMutI	CAGTG	5 cut(s)	189, 204, 679, 684, 745
Cac8I	GCNNGC	2 cut(s)	63, 648
CaiI	CAGNNNCTG	1 cut(s)	606
CfoI	GCGC	1 cut(s)	61
Cfr10I	RCCGGY	1 cut(s)	581
Cfr13I	GGNCC	2 cut(s)	573, 720
CsiI	ACCWGGT	1 cut(s)	513
Csp6I	GTAC	2 cut(s)	183, 455
CspAI	ACCGGT	1 cut(s)	581
CviAII	CATG	1 cut(s)	62
CviQI	GTAC	2 cut(s)	183, 455
DdeI	CTNAG	2 cut(s)	200, 369
DpnI	GATC	1 cut(s)	524
DpnII	GATC	1 cut(s)	522
EaeI	YGGCCR	3 cut(s)	496, 679, 727
Eco47I	GGWCC	2 cut(s)	573, 720
Eco57I	CTGAAG	1 cut(s)	721
Eco91I	GGTNACC	1 cut(s)	49
EcoO65I	GGTNACC	1 cut(s)	49
EcoRII	CCWGG	2 cut(s)	171, 513
FaeI	CATG	1 cut(s)	65
FaiI	YATR	7 cut(s)	63, 69, 111, 156, 180, 246, 634
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	1 cut(s)	61
FbaI	TGATCA	1 cut(s)	522
Fnu4HI	GCNGC	4 cut(s)	195, 463, 682, 705
FokI	GGATG	3 cut(s)	243, 366, 464
Fsp4HI	GCNGC	4 cut(s)	195, 463, 682, 705
FspAI	RTGCGCAY	1 cut(s)	60
FspI	TGCGCA	1 cut(s)	60
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	4 cut(s)	195, 463, 682, 705
GsaI	CCCAGC	3 cut(s)	230, 351, 713
GsuI	CTGGAG	1 cut(s)	447
HaeIII	GGCC	3 cut(s)	498, 681, 729
HapII	CCGG	2 cut(s)	285, 582
HhaI	GCGC	1 cut(s)	61
Hin1II	CATG	1 cut(s)	65
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	1 cut(s)	483
HpaI	GTTAAC	1 cut(s)	91
HpaII	CCGG	2 cut(s)	285, 582
HphI	GGTGA	4 cut(s)	61, 131, 478, 557
Hpy166II	GTNNAC	2 cut(s)	91, 553
Hpy188I	TCNGA	3 cut(s)	201, 482, 639
Hpy188III	TCNNGA	3 cut(s)	129, 576, 600
Hpy8I	GTNNAC	2 cut(s)	91, 553
HpyAV	CCTTC	5 cut(s)	290, 444, 462, 667, 745
HpyCH4III	ACNGT	1 cut(s)	688
HpyCH4IV	ACGT	1 cut(s)	531
HpyCH4V	TGCA	4 cut(s)	44, 360, 462, 553
HpyF10VI	GCNNNNNNNGC	3 cut(s)	285, 619, 710
HpyF3I	CTNAG	2 cut(s)	200, 369
HpySE526I	ACGT	1 cut(s)	531
Hsp92II	CATG	1 cut(s)	65
HspAI	GCGC	1 cut(s)	59
KpnI	GGTACC	1 cut(s)	458
Ksp22I	TGATCA	1 cut(s)	522
KspAI	GTTAAC	1 cut(s)	91
Kzo9I	GATC	1 cut(s)	522
LmnI	GCTCC	1 cut(s)	293
Lsp1109I	GCAGC	3 cut(s)	181, 474, 691
LweI	GCATC	3 cut(s)	112, 382, 486
MabI	ACCWGGT	1 cut(s)	513
MaeII	ACGT	1 cut(s)	531
MaeIII	GTNAC	3 cut(s)	49, 298, 664
MalI	GATC	1 cut(s)	524
MboI	GATC	1 cut(s)	522
MboII	GAAGA	1 cut(s)	29
MhlI	GDGCHC	3 cut(s)	206, 555, 748
MlsI	TGGCCA	2 cut(s)	498, 729
MluCI	AATT	2 cut(s)	249, 310
MluNI	TGGCCA	2 cut(s)	498, 729
MnlI	CCTC	6 cut(s)	173, 330, 375, 378, 395, 467
Mox20I	TGGCCA	2 cut(s)	498, 729
MscI	TGGCCA	2 cut(s)	498, 729
MseI	TTAA	1 cut(s)	90
MslI	CAYNNNNRTG	2 cut(s)	66, 689
Msp20I	TGGCCA	2 cut(s)	498, 729
MspI	CCGG	2 cut(s)	285, 582
MspR9I	CCNGG	3 cut(s)	173, 285, 515
MvaI	CCWGG	2 cut(s)	173, 515
MwoI	GCNNNNNNNGC	3 cut(s)	285, 619, 710
NciI	CCSGG	1 cut(s)	285
NdeII	GATC	1 cut(s)	522
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	5 cut(s)	278, 289, 456, 574, 745
NmuCI	GTSAC	3 cut(s)	49, 298, 664
NsbI	TGCGCA	1 cut(s)	60
NspI	RCATGY	1 cut(s)	65
OliI	CACNNNNGTG	1 cut(s)	689
PaeI	GCATGC	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	483
PflMI	CCANNNNNTGG	1 cut(s)	606
PinAI	ACCGGT	1 cut(s)	581
PkrI	GCNGC	4 cut(s)	196, 464, 683, 706
Psp1406I	AACGTT	1 cut(s)	531
Psp6I	CCWGG	2 cut(s)	171, 513
PspEI	GGTNACC	1 cut(s)	49
PspFI	CCCAGC	3 cut(s)	226, 347, 709
PspGI	CCWGG	2 cut(s)	171, 513
PspN4I	GGNNCC	5 cut(s)	278, 289, 456, 574, 745
PspPI	GGNCC	2 cut(s)	573, 720
PstI	CTGCAG	1 cut(s)	464
PstNI	CAGNNNCTG	1 cut(s)	606
RsaI	GTAC	2 cut(s)	184, 456
RsaNI	GTAC	2 cut(s)	183, 455
RseI	CAYNNNNRTG	2 cut(s)	66, 689
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	4 cut(s)	195, 463, 682, 705
Sau3AI	GATC	1 cut(s)	522
Sau96I	GGNCC	2 cut(s)	573, 720
ScrFI	CCNGG	3 cut(s)	173, 285, 515
SduI	GDGCHC	3 cut(s)	206, 555, 748
SexAI	ACCWGGT	1 cut(s)	513
SfaNI	GCATC	3 cut(s)	112, 382, 486
SfcI	CTRYAG	2 cut(s)	166, 460
SinI	GGWCC	2 cut(s)	573, 720
SmiMI	CAYNNNNRTG	2 cut(s)	66, 689
SphI	GCATGC	1 cut(s)	65
Sse9I	AATT	2 cut(s)	249, 310
SsiI	CCGC	2 cut(s)	682, 754
StyD4I	CCNGG	3 cut(s)	171, 283, 513
TaaI	ACNGT	1 cut(s)	688
TaiI	ACGT	1 cut(s)	534
TasI	AATT	2 cut(s)	249, 310
TauI	GCSGC	1 cut(s)	684
TfiI	GAWTC	1 cut(s)	483
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	5 cut(s)	196, 211, 679, 691, 745
TseFI	GTSAC	3 cut(s)	49, 298, 664
TseI	GCWGC	3 cut(s)	194, 462, 704
Tsp45I	GTSAC	3 cut(s)	49, 298, 664
TspDTI	ATGAA	2 cut(s)	17, 261
TspRI	CASTG	5 cut(s)	196, 211, 679, 691, 745
Van91I	CCANNNNNTGG	1 cut(s)	606
VneI	GTGCAC	1 cut(s)	551
VpaK11BI	GGWCC	2 cut(s)	573, 720
XceI	RCATGY	1 cut(s)	65
XcmI	CCANNNNNNNNNTGG	1 cut(s)	737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.