Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0019886

Physical Location & Seq

Genomic Coordinates Forward (+)

2182522 .. 2200518

Gene Structure 17997 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0033500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGGTGCAAGACTTTGCAGTCGTAGTTGTTTCCTGAAGTATGAGTTATACTCATTCTACGATGATGCAACACAAGCTTCAAAGGGAAGGAACAACCTTAAAGCTCAGGAGTATCCCAATGTCAGCTTTGCATCTATACGAGCAGCTCCTTCCAACTTCTCTGAGTCGAATAAACTTGGGGAAGGTGGTTTTGGTCCTGTTTACAAGGGTGTACTGAGGGATGGAAAGGAAGTGGCAATCAAGAGGCTTTCAAGCTATTCCGAGCAAGGTTTGGAGGAATTTACAAATGAGGTTTTACTGATAATGAAACTTCAGCATAAAAATCTTGTCCGGCTCTTAGGTTTCTGTGCTGATGGAGAAGAAAAACTGCTTGTGTATGAATACATGCCAAATAGTAGCTTAGATGTCATCCTCTTTGATTCAACGAAACGTGCACAACTTGATTGGAGCAGACGTGTGAGCATCATTAGTGGAATTGCAAGGGGAATACTTTATTTGCACGAGGACTCTCGACTTAGAATCATCCATAGAGACTTGAAAGCTAGCAATGTATTATTGGACAATGAGATGAATCCAAAGATCTCAGATTTTGGCATGGCAAGGATCTTTGCAGGAAGTGAAGGACAAGCTAATACTGCTACAATAGTTGGGACTTACGGCTACATGGCTCCGGAGTATGCAATGGAGGGTCTATTTTCTGTAAAATCTGATGTTTTCAGCTTTGGAGTAATCATGCTTGAGATTGTTAGTGGGAAAAAAAATAGTGGATTCTACCTCACTGAACATGCCAAGACACTGGTTGCATATGCATGGAACCTATGGAAGGATGGAAAAGAAGTTGAATTTATCGAGCCTTGCTTGATGGAATCATCCCCAACAAAAGAGATTTTGAGATGCATGCACATCGGGCTTTTGTGTGTCCAGGAAGACCCTGAAGAAAGACCGACAATGTCAGATGTGGTTGTGTTGCTGGGAAGTGATTCAATTGAGCTTCCTGAGCCAAAGAAACCAGCAATATTTGCAGCAAGTAGAATTGCTCCGATTGACGAGTCTACTTCTAGTCCTACTCCGAATGGCCTCACTCTTTCCATCATTTTGCCAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

368

Amino Acids

40.96

Weight (kDa)

5.59

Isoelectric Point (pI)

55.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	54 - 320	9.8e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	56 - 322	7.9e-52	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019886)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0159711
rosa_rugosa	Rorug05G0033500
rosa_samantha	Rh1BG061500 Rh2CG351700 Rh4BG089500 Rh5DG187700 Rh7AG465700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	18
AccI	GTMKAC	1 cut(s)	1052
AccIII	TCCGGA	1 cut(s)	670
AclWI	GGATC	1 cut(s)	611
AcsI	RAATTY	2 cut(s)	278, 842
AcuI	CTGAAG	3 cut(s)	56, 296, 954
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	1 cut(s)	823
AflIII	ACRYGT	1 cut(s)	454
AgsI	TTSAA	6 cut(s)	81, 252, 423, 538, 842, 984
AjiI	CACGTC	1 cut(s)	455
AjnI	CCWGG	1 cut(s)	921
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
Alw21I	GWGCWC	1 cut(s)	436
Alw26I	GTCTC	1 cut(s)	525
Alw44I	GTGCAC	1 cut(s)	432
AlwI	GGATC	1 cut(s)	611
Aor13HI	TCCGGA	1 cut(s)	670
AoxI	GGCC	1 cut(s)	1075
ApaLI	GTGCAC	1 cut(s)	432
ApeKI	GCWGC	2 cut(s)	143, 1022
ApoI	RAATTY	2 cut(s)	278, 842
Asp700I	GAANNNNTTC	1 cut(s)	979
AspS9I	GGNCC	1 cut(s)	194
AsuNHI	GCTAGC	1 cut(s)	542
AvaII	GGWCC	1 cut(s)	194
BaeGI	GKGCMC	1 cut(s)	436
BauI	CACGAG	1 cut(s)	500
BbsI	GAAGAC	1 cut(s)	933
Bbv12I	GWGCWC	1 cut(s)	436
BbvI	GCAGC	2 cut(s)	155, 1034
BccI	CCATC	5 cut(s)	215, 347, 821, 856, 1097
BceAI	ACGGC	1 cut(s)	673
BcgI	CGANNNNNNTGC	2 cut(s)	886, 920
BciT130I	CCWGG	1 cut(s)	923
BciVI	GTATCC	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	525
BfaI	CTAG	2 cut(s)	543, 1059
BfuI	GTATCC	1 cut(s)	123
BglII	AGATCT	1 cut(s)	579
BisI	GCNGC	2 cut(s)	144, 1023
BlsI	GCNGC	2 cut(s)	145, 1024
Bme1390I	CCNGG	1 cut(s)	923
Bme18I	GGWCC	1 cut(s)	194
BmgBI	CACGTC	1 cut(s)	455
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	2 cut(s)	669, 815
BmrFI	CCNGG	1 cut(s)	923
BmsI	GCATC	4 cut(s)	55, 140, 471, 884
BmtI	GCTAGC	1 cut(s)	546
BpiI	GAAGAC	1 cut(s)	933
BplI	GAGNNNNNCTC	2 cut(s)	35, 67
Bpu10I	CCTNAGC	2 cut(s)	105, 996
BpuEI	CTTGAG	1 cut(s)	758
BsaJI	CCNNGG	1 cut(s)	1100
BsaWI	WCCGGW	1 cut(s)	670
BsaXI	ACNNNNNCTCC	2 cut(s)	439, 469
Bsc4I	CCNNNNNNNGG	1 cut(s)	823
Bse1I	ACTGG	1 cut(s)	801
Bse3DI	GCAATG	2 cut(s)	553, 687
BseAI	TCCGGA	1 cut(s)	670
BseBI	CCWGG	1 cut(s)	923
BseDI	CCNNGG	1 cut(s)	1100
BseGI	GGATG	5 cut(s)	226, 408, 522, 832, 869
BseLI	CCNNNNNNNGG	1 cut(s)	823
BseMI	GCAATG	2 cut(s)	553, 687
BseMII	CTCAG	5 cut(s)	119, 153, 206, 597, 987
BseNI	ACTGG	1 cut(s)	801
BseSI	GKGCMC	1 cut(s)	436
BseXI	GCAGC	2 cut(s)	155, 1034
BseYI	CCCAGC	1 cut(s)	970
BshFI	GGCC	1 cut(s)	1077
BsiHKAI	GWGCWC	1 cut(s)	436
BsiSI	CCGG	2 cut(s)	331, 671
BslFI	GGGAC	1 cut(s)	664
BslI	CCNNNNNNNGG	1 cut(s)	823
BsmAI	GTCTC	1 cut(s)	525
BsmFI	GGGAC	1 cut(s)	664
BsnI	GGCC	1 cut(s)	1077
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp13I	TCCGGA	1 cut(s)	670
Bsp143I	GATC	2 cut(s)	579, 603
BspANI	GGCC	1 cut(s)	1077
BspCNI	CTCAG	5 cut(s)	118, 154, 207, 596, 988
BspEI	TCCGGA	1 cut(s)	670
BspLI	GGNNCC	2 cut(s)	669, 815
BspOI	GCTAGC	1 cut(s)	546
BspPI	GGATC	1 cut(s)	611
BsrDI	GCAATG	2 cut(s)	553, 687
BsrI	ACTGG	1 cut(s)	801
BssECI	CCNNGG	1 cut(s)	1100
BssMI	GATC	2 cut(s)	579, 603
BssSI	CACGAG	1 cut(s)	500
BssT1I	CCWWGG	1 cut(s)	1100
Bst2BI	CACGAG	1 cut(s)	500
Bst2UI	CCWGG	1 cut(s)	923
BstAPI	GCANNNNNTGC	1 cut(s)	1019
BstC8I	GCNNGC	2 cut(s)	544, 899
BstDEI	CTNAG	8 cut(s)	105, 162, 215, 337, 400, 515, 583, 996
BstENI	CCTNNNNNAGG	1 cut(s)	821
BstF5I	GGATG	5 cut(s)	226, 408, 522, 832, 869
BstKTI	GATC	2 cut(s)	582, 606
BstMAI	GTCTC	1 cut(s)	525
BstMBI	GATC	2 cut(s)	579, 603
BstMWI	GCNNNNNNNGC	5 cut(s)	74, 635, 907, 997, 1019
BstNI	CCWGG	1 cut(s)	923
BstNSI	RCATGY	3 cut(s)	388, 788, 901
BstSCI	CCNGG	1 cut(s)	921
BstSLI	GKGCMC	1 cut(s)	436
BstV1I	GCAGC	2 cut(s)	155, 1034
BstV2I	GAAGAC	1 cut(s)	933
BstX2I	RGATCY	2 cut(s)	579, 603
BstXI	CCANNNNNNTGG	1 cut(s)	796
BstYI	RGATCY	2 cut(s)	579, 603
BsuI	GTATCC	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	1077
BtrI	CACGTC	1 cut(s)	455
BtsCI	GGATG	5 cut(s)	226, 408, 522, 832, 869
BtsIMutI	CAGTG	2 cut(s)	777, 794
Cac8I	GCNNGC	2 cut(s)	544, 899
Cfr13I	GGNCC	1 cut(s)	194
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	7 cut(s)	385, 595, 664, 733, 785, 810, 898
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	8 cut(s)	105, 162, 215, 337, 400, 515, 583, 996
DpnI	GATC	2 cut(s)	581, 605
DpnII	GATC	2 cut(s)	579, 603
DrdI	GACNNNNNNGTC	1 cut(s)	18
DseDI	GACNNNNNNGTC	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	1100
Eco47I	GGWCC	1 cut(s)	194
Eco57I	CTGAAG	3 cut(s)	56, 296, 954
EcoNI	CCTNNNNNAGG	1 cut(s)	821
EcoRII	CCWGG	1 cut(s)	921
EcoT14I	CCWWGG	1 cut(s)	1100
EcoT22I	ATGCAT	2 cut(s)	811, 899
ErhI	CCWWGG	1 cut(s)	1100
FaeI	CATG	7 cut(s)	388, 598, 667, 736, 788, 813, 901
FaqI	GGGAC	1 cut(s)	664
FatI	CATG	7 cut(s)	384, 594, 663, 732, 784, 809, 897
FauNDI	CATATG	1 cut(s)	805
FblI	GTMKAC	1 cut(s)	1052
Fnu4HI	GCNGC	2 cut(s)	144, 1023
FokI	GGATG	5 cut(s)	233, 395, 509, 839, 856
Fsp4HI	GCNGC	2 cut(s)	144, 1023
FspBI	CTAG	2 cut(s)	543, 1059
GluI	GCNGC	2 cut(s)	144, 1023
GsaI	CCCAGC	1 cut(s)	974
HaeIII	GGCC	1 cut(s)	1077
HapII	CCGG	2 cut(s)	331, 671
Hin1II	CATG	7 cut(s)	388, 598, 667, 736, 788, 813, 901
HindIII	AAGCTT	1 cut(s)	75
HinfI	GANTC	9 cut(s)	164, 419, 506, 519, 571, 768, 866, 980, 1049
HpaII	CCGG	2 cut(s)	331, 671
Hpy166II	GTNNAC	4 cut(s)	202, 212, 434, 1053
Hpy188I	TCNGA	7 cut(s)	163, 262, 586, 709, 955, 1041, 1071
Hpy188III	TCNNGA	6 cut(s)	34, 107, 241, 510, 671, 995
Hpy8I	GTNNAC	4 cut(s)	202, 212, 434, 1053
HpyAV	CCTTC	5 cut(s)	81, 159, 176, 614, 817
HpyCH4IV	ACGT	2 cut(s)	430, 454
HpyF10VI	GCNNNNNNNGC	5 cut(s)	74, 635, 907, 997, 1019
HpyF3I	CTNAG	8 cut(s)	105, 162, 215, 337, 400, 515, 583, 996
HpySE526I	ACGT	2 cut(s)	430, 454
Hsp92II	CATG	7 cut(s)	388, 598, 667, 736, 788, 813, 901
Kpn2I	TCCGGA	1 cut(s)	670
Kzo9I	GATC	2 cut(s)	579, 603
LmnI	GCTCC	4 cut(s)	151, 447, 673, 1042
Lsp1109I	GCAGC	2 cut(s)	155, 1034
LweI	GCATC	4 cut(s)	55, 140, 471, 884
MaeI	CTAG	2 cut(s)	543, 1059
MaeII	ACGT	2 cut(s)	430, 454
MalI	GATC	2 cut(s)	581, 605
MboI	GATC	2 cut(s)	579, 603
MboII	GAAGA	3 cut(s)	371, 938, 947
MfeI	CAATTG	1 cut(s)	984
MflI	RGATCY	2 cut(s)	579, 603
MhlI	GDGCHC	1 cut(s)	436
MluCI	AATT	5 cut(s)	278, 474, 842, 984, 1032
MlyI	GAGTC	3 cut(s)	173, 500, 1058
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	9 cut(s)	210, 237, 268, 283, 422, 496, 679, 785, 1088
Mph1103I	ATGCAT	2 cut(s)	811, 899
MroI	TCCGGA	1 cut(s)	670
MroXI	GAANNNNTTC	1 cut(s)	979
MseI	TTAA	1 cut(s)	99
MslI	CAYNNNNRTG	1 cut(s)	808
MspI	CCGG	2 cut(s)	331, 671
MspR9I	CCNGG	1 cut(s)	923
MunI	CAATTG	1 cut(s)	984
MvaI	CCWGG	1 cut(s)	923
MwoI	GCNNNNNNNGC	5 cut(s)	74, 635, 907, 997, 1019
NdeI	CATATG	1 cut(s)	805
NdeII	GATC	2 cut(s)	579, 603
NheI	GCTAGC	1 cut(s)	542
NlaIII	CATG	7 cut(s)	388, 598, 667, 736, 788, 813, 901
NlaIV	GGNNCC	2 cut(s)	669, 815
NsiI	ATGCAT	2 cut(s)	811, 899
NspI	RCATGY	3 cut(s)	388, 788, 901
PaeI	GCATGC	1 cut(s)	901
PdmI	GAANNNNTTC	1 cut(s)	979
PfeI	GAWTC	6 cut(s)	419, 519, 571, 768, 866, 980
PflFI	GACNNNGTC	1 cut(s)	949
PfoI	TCCNGGA	1 cut(s)	921
PkrI	GCNGC	2 cut(s)	145, 1024
PleI	GAGTC	3 cut(s)	172, 500, 1057
PpsI	GAGTC	3 cut(s)	172, 500, 1057
Psp6I	CCWGG	1 cut(s)	921
PspFI	CCCAGC	1 cut(s)	970
PspGI	CCWGG	1 cut(s)	921
PspN4I	GGNNCC	2 cut(s)	669, 815
PspPI	GGNCC	1 cut(s)	194
PsuI	RGATCY	2 cut(s)	579, 603
PsyI	GACNNNGTC	1 cut(s)	949
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	808
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	2 cut(s)	144, 1023
Sau3AI	GATC	2 cut(s)	579, 603
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	3 cut(s)	173, 500, 1058
ScrFI	CCNGG	1 cut(s)	923
SduI	GDGCHC	1 cut(s)	436
SfaNI	GCATC	4 cut(s)	55, 140, 471, 884
SinI	GGWCC	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	808
SmlI	CTYRAG	1 cut(s)	737
SmoI	CTYRAG	1 cut(s)	737
SphI	GCATGC	1 cut(s)	901
Sse9I	AATT	5 cut(s)	278, 474, 842, 984, 1032
SspI	AATATT	1 cut(s)	1017
SspMI	CTAG	2 cut(s)	543, 1059
StyD4I	CCNGG	1 cut(s)	921
StyI	CCWWGG	1 cut(s)	1100
TaiI	ACGT	2 cut(s)	433, 457
TaqI	TCGA	3 cut(s)	167, 511, 849
TaqII	GACCGA	1 cut(s)	958
TasI	AATT	5 cut(s)	278, 474, 842, 984, 1032
TatI	WGTACW	1 cut(s)	211
TfiI	GAWTC	6 cut(s)	419, 519, 571, 768, 866, 980
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	2 cut(s)	784, 801
TseI	GCWGC	2 cut(s)	143, 1022
TspDTI	ATGAA	3 cut(s)	320, 393, 584
TspRI	CASTG	2 cut(s)	784, 801
Tth111I	GACNNNGTC	1 cut(s)	949
VneI	GTGCAC	1 cut(s)	432
VpaK11BI	GGWCC	1 cut(s)	194
XagI	CCTNNNNNAGG	1 cut(s)	821
XapI	RAATTY	2 cut(s)	278, 842
XceI	RCATGY	3 cut(s)	388, 788, 901
XmiI	GTMKAC	1 cut(s)	1052
XmnI	GAANNNNTTC	1 cut(s)	979
XspI	CTAG	2 cut(s)	543, 1059
Zsp2I	ATGCAT	2 cut(s)	811, 899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.