Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0019886

Physical Location & Seq

Genomic Coordinates Reverse (-)

15419991 .. 15420592

Gene Structure 602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG089500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGTCAGAGCCATCAGCAGAACTAATGCATCATGTTGGACATAAGTTCCATGAGGTATTTCAGATAAGACAAGGATGCTACGCGGATCTTCCTGCTGCAAAGATCTCAAAAATGATGAAATCCAACAGTTTAGATGTATGCTGTCGATGTACCTGGAAACAAAATCAGTTTATTGTTGAAGATGATGAGCTCCCTCAATTCAATACTAATGCAGTAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

73

Amino Acids

8.4

Weight (kDa)

6.01

Isoelectric Point (pI)

52.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019886)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0159711
rosa_rugosa	Rorug05G0033500
rosa_samantha	Rh1BG061500 Rh2CG351700 Rh4BG089500 Rh5DG187700 Rh7AG465700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	83
AciI	CCGC	1 cut(s)	83
AclWI	GGATC	1 cut(s)	93
AfaI	GTAC	1 cut(s)	151
AgsI	TTSAA	2 cut(s)	179, 202
AjnI	CCWGG	1 cut(s)	152
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
Alw21I	GWGCWC	1 cut(s)	192
AlwI	GGATC	1 cut(s)	93
ApeKI	GCWGC	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	154
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
Bme1390I	CCNGG	1 cut(s)	154
BmrFI	CCNGG	1 cut(s)	154
BmsI	GCATC	2 cut(s)	37, 65
BseBI	CCWGG	1 cut(s)	154
BseGI	GGATG	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	82
Bsh1236I	CGCG	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	2 cut(s)	85, 102
BspACI	CCGC	1 cut(s)	83
BspFNI	CGCG	1 cut(s)	83
BspPI	GGATC	1 cut(s)	93
BssMI	GATC	2 cut(s)	85, 102
Bst2UI	CCWGG	1 cut(s)	154
Bst4CI	ACNGT	1 cut(s)	128
BstF5I	GGATG	1 cut(s)	80
BstFNI	CGCG	1 cut(s)	83
BstKTI	GATC	2 cut(s)	88, 105
BstMBI	GATC	2 cut(s)	85, 102
BstNI	CCWGG	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	152
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	82
BstX2I	RGATCY	2 cut(s)	85, 102
BstYI	RGATCY	2 cut(s)	85, 102
BtsCI	GGATG	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	150
CviAII	CATG	2 cut(s)	32, 50
CviJI	RGCY	2 cut(s)	10, 190
CviKI_1	RGCY	2 cut(s)	10, 190
CviQI	GTAC	1 cut(s)	150
DpnI	GATC	2 cut(s)	87, 104
DpnII	GATC	2 cut(s)	85, 102
Ecl136II	GAGCTC	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	192
Eco53kI	GAGCTC	1 cut(s)	190
EcoICRI	GAGCTC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	152
EcoT22I	ATGCAT	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	192
FaeI	CATG	2 cut(s)	35, 53
FaiI	YATR	4 cut(s)	33, 42, 51, 139
FatI	CATG	2 cut(s)	31, 49
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	1 cut(s)	87
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	1 cut(s)	96
GluI	GCNGC	1 cut(s)	96
Hin1II	CATG	2 cut(s)	35, 53
Hpy188I	TCNGA	2 cut(s)	7, 63
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4V	TGCA	3 cut(s)	28, 98, 212
Hsp92II	CATG	2 cut(s)	35, 53
Kzo9I	GATC	2 cut(s)	85, 102
LmnI	GCTCC	1 cut(s)	195
LpnPI	CCDG	3 cut(s)	105, 139, 166
Lsp1109I	GCAGC	1 cut(s)	82
LweI	GCATC	2 cut(s)	37, 65
MalI	GATC	2 cut(s)	87, 104
MboI	GATC	2 cut(s)	85, 102
MboII	GAAGA	2 cut(s)	80, 191
MflI	RGATCY	2 cut(s)	85, 102
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	2 cut(s)	197, 217
MmeI	TCCRAC	2 cut(s)	16, 147
MnlI	CCTC	2 cut(s)	46, 204
Mph1103I	ATGCAT	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	154
MvaI	CCWGG	1 cut(s)	154
MvnI	CGCG	1 cut(s)	83
NdeII	GATC	2 cut(s)	85, 102
NlaIII	CATG	2 cut(s)	35, 53
NsiI	ATGCAT	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	97
Psp124BI	GAGCTC	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	152
PsuI	RGATCY	2 cut(s)	85, 102
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
SacI	GAGCTC	1 cut(s)	192
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	2 cut(s)	85, 102
ScrFI	CCNGG	1 cut(s)	154
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	3 cut(s)	57, 155, 192
SfaNI	GCATC	2 cut(s)	37, 65
SgeI	CNNG	7 cut(s)	44, 62, 83, 94, 104, 165, 166
Sse9I	AATT	2 cut(s)	197, 217
SsiI	CCGC	1 cut(s)	83
SstI	GAGCTC	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	152
TaaI	ACNGT	1 cut(s)	128
TaqI	TCGA	1 cut(s)	145
TasI	AATT	2 cut(s)	197, 217
TseI	GCWGC	1 cut(s)	95
TspDTI	ATGAA	1 cut(s)	131
Zsp2I	ATGCAT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.