Rh2CG351700
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0019886
Physical Location & Seq
Reverse (-)
47569269 .. 47590364
21096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG351700.1

Sequence Viewer

Length: 705 bp
ATGCCTAGTAGCAGTGCTTGCCATGAGCTTTATAGTGGAGCTCCCAAGCTAGATGTCACTCCGAAGTTTTTAATGAAGGATTCCTCTTCTGGTAACCACAAAACTGAAAAGGGAGGAACCTTGACTTCAAGTGTTCCTGCTAATGGGGATATGTTTGGACGAGTTGTAAATGGTACTGGTGAGACTGAAGGCAAGTGGCTAGCGTTTTTAGTGGAGTGGTTAAATAGTTTACTTCCTGATTTAGGTTTACCAGAAACTGCTTCATATGAGGACTTGAGATCAGTATTGATTGATGGTACCATTTTATGTAGGCTATTGAACAGGCTTAGACCTTGTTCTGTTGACGAGGGATCTATGAAGACTGTTATAGATTGTCTTTTAACAACCACGACTTGGGATAAGTGTTGCAGTAGAAGGTACAGTTATTCTCTTGCACTCACCAGATCCATCATGCATGTTGACAAACTTTTAGATTTTGTTTTCTTCAAACAGTTGATCTTTGACGCAACTTTACCTTCCACAGAGCCATCAGCAGAACTAATGCATCATGTTGGACATAAGTTCCATGAGGTATTTCAGATAAGACAAGGATGCTACGCGGATCTTCCTGCTGAAAAGATCTCAGAAATGATGAAATCCAACAGTTTAGATTCTATTGTTGAAGATGATGAGCTCCCTCAATTCAACACTAATGCAGTAAATTAG

Protein Analysis

234

Amino Acids

26.02

Weight (kDa)

5.24

Isoelectric Point (pI)

47.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CH PF00307 70 - 141 2e-06 Calponin homology (CH) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0019886)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0159711
rosa_rugosa Rorug05G0033500
rosa_samantha Rh1BG061500 Rh2CG351700 Rh4BG089500 Rh5DG187700 Rh7AG465700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 296
AccB1I GGYRCC 1 cut(s) 296
AccB7I CCANNNNNTGG 1 cut(s) 393
AccII CGCG 1 cut(s) 599
AciI CCGC 1 cut(s) 599
AclWI GGATC 3 cut(s) 358, 438, 609
AcuI CTGAAG 1 cut(s) 207
AfaI GTAC 3 cut(s) 175, 298, 419
AfiI CCNNNNNNNGG 3 cut(s) 143, 242, 393
AgsI TTSAA 5 cut(s) 129, 319, 487, 662, 685
AluBI AGCT 4 cut(s) 28, 41, 49, 673
AluI AGCT 4 cut(s) 28, 41, 49, 673
Alw21I GWGCWC 2 cut(s) 43, 675
Alw26I GTCTC 1 cut(s) 176
AlwI GGATC 3 cut(s) 358, 438, 609
AlwNI CAGNNNCTG 1 cut(s) 257
Asp718I GGTACC 1 cut(s) 296
AsuHPI GGTGA 2 cut(s) 191, 430
AsuNHI GCTAGC 1 cut(s) 199
BanI GGYRCC 1 cut(s) 296
BanII GRGCYC 2 cut(s) 43, 675
BbsI GAAGAC 1 cut(s) 365
Bbv12I GWGCWC 2 cut(s) 43, 675
BccI CCATC 3 cut(s) 287, 455, 535
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 3 cut(s) 6, 50, 200
BglII AGATCT 1 cut(s) 618
BmiI GGNNCC 2 cut(s) 118, 298
BmsI GCATC 2 cut(s) 553, 581
BmtI GCTAGC 1 cut(s) 203
BpiI GAAGAC 1 cut(s) 365
BpuEI CTTGAG 1 cut(s) 295
Bsc4I CCNNNNNNNGG 3 cut(s) 143, 242, 393
Bse1I ACTGG 1 cut(s) 181
BseGI GGATG 1 cut(s) 596
BseLI CCNNNNNNNGG 3 cut(s) 143, 242, 393
BseMII CTCAG 1 cut(s) 636
BseNI ACTGG 1 cut(s) 181
Bsh1236I CGCG 1 cut(s) 599
BshNI GGYRCC 1 cut(s) 296
BsiHKAI GWGCWC 2 cut(s) 43, 675
BslI CCNNNNNNNGG 3 cut(s) 143, 242, 393
BsmAI GTCTC 1 cut(s) 176
Bsp1286I GDGCHC 2 cut(s) 43, 675
Bsp143I GATC 6 cut(s) 278, 350, 443, 495, 601, 618
BspACI CCGC 1 cut(s) 599
BspCNI CTCAG 1 cut(s) 635
BspFNI CGCG 1 cut(s) 599
BspLI GGNNCC 2 cut(s) 118, 298
BspOI GCTAGC 1 cut(s) 203
BspPI GGATC 3 cut(s) 358, 438, 609
BspT107I GGYRCC 1 cut(s) 296
BsrI ACTGG 1 cut(s) 181
BssMI GATC 6 cut(s) 278, 350, 443, 495, 601, 618
Bst4CI ACNGT 4 cut(s) 364, 422, 492, 644
Bst6I CTCTTC 1 cut(s) 91
BstAPI GCANNNNNTGC 1 cut(s) 18
BstC8I GCNNGC 2 cut(s) 19, 201
BstDEI CTNAG 2 cut(s) 326, 622
BstEII GGTNACC 1 cut(s) 92
BstENI CCTNNNNNAGG 1 cut(s) 240
BstF5I GGATG 1 cut(s) 596
BstFNI CGCG 1 cut(s) 599
BstKTI GATC 6 cut(s) 281, 353, 446, 498, 604, 621
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 6 cut(s) 278, 350, 443, 495, 601, 618
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstNSI RCATGY 1 cut(s) 458
BstPI GGTNACC 1 cut(s) 92
BstUI CGCG 1 cut(s) 599
BstV2I GAAGAC 1 cut(s) 365
BstX2I RGATCY 4 cut(s) 350, 443, 601, 618
BstYI RGATCY 4 cut(s) 350, 443, 601, 618
BtsCI GGATG 1 cut(s) 596
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 19
Cac8I GCNNGC 2 cut(s) 19, 201
CaiI CAGNNNCTG 1 cut(s) 257
CseI GACGC 1 cut(s) 512
Csp6I GTAC 3 cut(s) 174, 297, 418
CviAII CATG 5 cut(s) 23, 451, 455, 548, 566
CviJI RGCY 8 cut(s) 28, 41, 49, 199, 313, 325, 526, 673
CviKI_1 RGCY 8 cut(s) 28, 41, 49, 199, 313, 325, 526, 673
CviQI GTAC 3 cut(s) 174, 297, 418
DdeI CTNAG 2 cut(s) 326, 622
DpnI GATC 6 cut(s) 280, 352, 445, 497, 603, 620
DpnII GATC 6 cut(s) 278, 350, 443, 495, 601, 618
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
Ecl136II GAGCTC 2 cut(s) 41, 673
Eco24I GRGCYC 2 cut(s) 43, 675
Eco53kI GAGCTC 2 cut(s) 41, 673
Eco57I CTGAAG 1 cut(s) 207
Eco91I GGTNACC 1 cut(s) 92
EcoICRI GAGCTC 2 cut(s) 41, 673
EcoNI CCTNNNNNAGG 1 cut(s) 240
EcoO65I GGTNACC 1 cut(s) 92
EcoT22I ATGCAT 2 cut(s) 456, 546
EcoT38I GRGCYC 2 cut(s) 43, 675
FaeI CATG 5 cut(s) 26, 454, 458, 551, 569
FatI CATG 5 cut(s) 22, 450, 454, 547, 565
FauNDI CATATG 1 cut(s) 265
FokI GGATG 1 cut(s) 603
FriOI GRGCYC 2 cut(s) 43, 675
FspBI CTAG 3 cut(s) 6, 50, 200
HgaI GACGC 1 cut(s) 512
Hin1II CATG 5 cut(s) 26, 454, 458, 551, 569
HincII GTYRAC 2 cut(s) 343, 460
HindII GTYRAC 2 cut(s) 343, 460
HinfI GANTC 2 cut(s) 80, 650
HphI GGTGA 2 cut(s) 191, 430
Hpy166II GTNNAC 4 cut(s) 230, 248, 343, 460
Hpy188I TCNGA 3 cut(s) 63, 579, 625
Hpy188III TCNNGA 1 cut(s) 236
Hpy8I GTNNAC 4 cut(s) 230, 248, 343, 460
HpyAV CCTTC 4 cut(s) 70, 182, 408, 525
HpyCH4III ACNGT 4 cut(s) 364, 422, 492, 644
HpyCH4V TGCA 5 cut(s) 408, 434, 454, 544, 695
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
HpyF3I CTNAG 2 cut(s) 326, 622
Hsp92II CATG 5 cut(s) 26, 454, 458, 551, 569
KpnI GGTACC 1 cut(s) 300
Kzo9I GATC 6 cut(s) 278, 350, 443, 495, 601, 618
LmnI GCTCC 3 cut(s) 38, 46, 678
LpnPI CCDG 8 cut(s) 75, 150, 162, 249, 264, 307, 454, 621
LweI GCATC 2 cut(s) 553, 581
MaeI CTAG 3 cut(s) 6, 50, 200
MaeIII GTNAC 2 cut(s) 55, 92
MalI GATC 6 cut(s) 280, 352, 445, 497, 603, 620
MboI GATC 6 cut(s) 278, 350, 443, 495, 601, 618
MboII GAAGA 5 cut(s) 78, 370, 475, 596, 674
MflI RGATCY 4 cut(s) 350, 443, 601, 618
MhlI GDGCHC 2 cut(s) 43, 675
MluCI AATT 2 cut(s) 680, 700
MmeI TCCRAC 2 cut(s) 532, 663
MnlI CCTC 6 cut(s) 94, 107, 262, 340, 562, 687
Mph1103I ATGCAT 2 cut(s) 456, 546
MseI TTAA 3 cut(s) 71, 221, 380
MvnI CGCG 1 cut(s) 599
MwoI GCNNNNNNNGC 1 cut(s) 18
NdeI CATATG 1 cut(s) 265
NdeII GATC 6 cut(s) 278, 350, 443, 495, 601, 618
NheI GCTAGC 1 cut(s) 199
NlaIII CATG 5 cut(s) 26, 454, 458, 551, 569
NlaIV GGNNCC 2 cut(s) 118, 298
NmuCI GTSAC 1 cut(s) 55
NsiI ATGCAT 2 cut(s) 456, 546
NspI RCATGY 1 cut(s) 458
PfeI GAWTC 2 cut(s) 80, 650
PflMI CCANNNNNTGG 1 cut(s) 393
Psp124BI GAGCTC 2 cut(s) 43, 675
PspEI GGTNACC 1 cut(s) 92
PspN4I GGNNCC 2 cut(s) 118, 298
PstNI CAGNNNCTG 1 cut(s) 257
PsuI RGATCY 4 cut(s) 350, 443, 601, 618
RsaI GTAC 3 cut(s) 175, 298, 419
RsaNI GTAC 3 cut(s) 174, 297, 418
SacI GAGCTC 2 cut(s) 43, 675
SaqAI TTAA 3 cut(s) 71, 221, 380
Sau3AI GATC 6 cut(s) 278, 350, 443, 495, 601, 618
SduI GDGCHC 2 cut(s) 43, 675
SfaNI GCATC 2 cut(s) 553, 581
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
Sse9I AATT 2 cut(s) 680, 700
SsiI CCGC 1 cut(s) 599
SspMI CTAG 3 cut(s) 6, 50, 200
SstI GAGCTC 2 cut(s) 43, 675
TaaI ACNGT 4 cut(s) 364, 422, 492, 644
TasI AATT 2 cut(s) 680, 700
TfiI GAWTC 2 cut(s) 80, 650
Tru1I TTAA 3 cut(s) 71, 221, 380
Tru9I TTAA 3 cut(s) 71, 221, 380
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 4 cut(s) 89, 252, 371, 647
TspRI CASTG 1 cut(s) 19
Van91I CCANNNNNTGG 1 cut(s) 393
XagI CCTNNNNNAGG 1 cut(s) 240
XceI RCATGY 1 cut(s) 458
XspI CTAG 3 cut(s) 6, 50, 200
Zsp2I ATGCAT 2 cut(s) 456, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.