Rh5DG187700
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
20848838 .. 20855790
6953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG187700.1

Sequence Viewer

Length: 687 bp
ATGACACTTGTGGTTGTACTACATAAAGTGAAAAGAGAGCTTTGCAAAGGATTAAATTTCACTTTGAAGGTAACGAGTAGTAGTGCTTGCCATGAGCTTTATAGTGGAGCTCCCAAGCTAGATGTCACTCCGAAGTTTTTAATGATGGATTCCTCTTCTGGTAACCACAAAACTGAAAAGGGTGGAACCTCGACTTCAAGTGTTCCTGCTAATGGGGATATGTTTGGACGAGTTGTAAATGGTACTGGTGAGACTGAAGGTTTACCAGAAACTGCTTCATATGAGGACTTGAGATCAGTATTGATTGATGGTACCATTTTATGTAGGCTATTGAACAGGCTTAGACCTTGTTCTGTTGACGAGGGATCTATGAAGACTGTTATAGATTGTCTTTTAACACTTAGAACACGACTTGGGTCAAGTGTTACAGCAGAAGGTTTTTCTCTGTTTAGTCCAACTGAGCCATTAGCAGAATTAATGCATCATGTTGGACATAAGTTCCATGAGGTATTTCAGATAAGACAAGGATGCCATGCAGATCTTCCTGCTGCAAAGATCTCAGAAATGATGAAATCCAACAGTTTAGATCGTGTGGCTTGTCTACTTAGAAAATATTTTCCTTTGCTAATTGAAGATGCTATTGGTACTACAATAGCTTGGCCATCTGACAAAGTTGTTATTCTTTGA

Protein Analysis

228

Amino Acids

24.88

Weight (kDa)

7.07

Isoelectric Point (pI)

45.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019886)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 311
AccB1I GGYRCC 1 cut(s) 311
AccI GTMKAC 1 cut(s) 601
AclWI GGATC 1 cut(s) 373
AcoI YGGCCR 1 cut(s) 659
AcsI RAATTY 1 cut(s) 55
AcuI CTGAAG 1 cut(s) 276
AfaI GTAC 4 cut(s) 18, 244, 313, 646
AfiI CCNNNNNNNGG 1 cut(s) 212
AgsI TTSAA 4 cut(s) 67, 198, 334, 632
AjuI GAANNNNNNNTTGG 2 cut(s) 624, 656
AluBI AGCT 5 cut(s) 40, 97, 110, 118, 656
AluI AGCT 5 cut(s) 40, 97, 110, 118, 656
Alw21I GWGCWC 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 245
AlwI GGATC 1 cut(s) 373
AlwNI CAGNNNCTG 1 cut(s) 272
AoxI GGCC 1 cut(s) 659
ApeKI GCWGC 1 cut(s) 548
ApoI RAATTY 1 cut(s) 55
AseI ATTAAT 1 cut(s) 476
Asp718I GGTACC 1 cut(s) 311
AsuHPI GGTGA 1 cut(s) 260
BalI TGGCCA 1 cut(s) 661
BanI GGYRCC 1 cut(s) 311
BanII GRGCYC 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 380
Bbv12I GWGCWC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 535
BccI CCATC 3 cut(s) 139, 302, 670
BcoDI GTCTC 1 cut(s) 245
BfaI CTAG 1 cut(s) 119
BglII AGATCT 2 cut(s) 538, 555
BisI GCNGC 1 cut(s) 549
BlsI GCNGC 1 cut(s) 550
BmiI GGNNCC 2 cut(s) 187, 313
BmsI GCATC 3 cut(s) 490, 518, 625
BoxI GACNNNNGTC 1 cut(s) 415
BpiI GAAGAC 1 cut(s) 380
BpuEI CTTGAG 1 cut(s) 310
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 250
BseGI GGATG 1 cut(s) 533
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMII CTCAG 2 cut(s) 450, 573
BseNI ACTGG 1 cut(s) 250
BseXI GCAGC 1 cut(s) 535
BshFI GGCC 1 cut(s) 661
BshNI GGYRCC 1 cut(s) 311
BsiHKAI GWGCWC 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 212
BsmAI GTCTC 1 cut(s) 245
BsnI GGCC 1 cut(s) 661
Bsp1286I GDGCHC 1 cut(s) 112
Bsp143I GATC 5 cut(s) 293, 365, 538, 555, 586
BspANI GGCC 1 cut(s) 661
BspCNI CTCAG 2 cut(s) 451, 572
BspLI GGNNCC 2 cut(s) 187, 313
BspPI GGATC 1 cut(s) 373
BspT107I GGYRCC 1 cut(s) 311
BsrI ACTGG 1 cut(s) 250
BssMI GATC 5 cut(s) 293, 365, 538, 555, 586
Bst4CI ACNGT 2 cut(s) 379, 581
Bst6I CTCTTC 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 5 cut(s) 341, 401, 459, 559, 605
BstEII GGTNACC 1 cut(s) 161
BstF5I GGATG 1 cut(s) 533
BstKTI GATC 5 cut(s) 296, 368, 541, 558, 589
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 5 cut(s) 293, 365, 538, 555, 586
BstPAI GACNNNNGTC 1 cut(s) 415
BstPI GGTNACC 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 535
BstV2I GAAGAC 1 cut(s) 380
BstX2I RGATCY 3 cut(s) 365, 538, 555
BstYI RGATCY 3 cut(s) 365, 538, 555
BsuRI GGCC 1 cut(s) 661
BtsCI GGATG 1 cut(s) 533
Cac8I GCNNGC 1 cut(s) 88
CaiI CAGNNNCTG 1 cut(s) 272
Csp6I GTAC 4 cut(s) 17, 243, 312, 645
CviAII CATG 4 cut(s) 92, 485, 503, 533
CviQI GTAC 4 cut(s) 17, 243, 312, 645
DdeI CTNAG 5 cut(s) 341, 401, 459, 559, 605
DpnI GATC 5 cut(s) 295, 367, 540, 557, 588
DpnII GATC 5 cut(s) 293, 365, 538, 555, 586
EaeI YGGCCR 1 cut(s) 659
Eam1104I CTCTTC 1 cut(s) 160
EarI CTCTTC 1 cut(s) 160
Ecl136II GAGCTC 1 cut(s) 110
Eco24I GRGCYC 1 cut(s) 112
Eco53kI GAGCTC 1 cut(s) 110
Eco57I CTGAAG 1 cut(s) 276
Eco91I GGTNACC 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 110
EcoO65I GGTNACC 1 cut(s) 161
EcoT22I ATGCAT 1 cut(s) 483
EcoT38I GRGCYC 1 cut(s) 112
FaeI CATG 4 cut(s) 95, 488, 506, 536
FatI CATG 4 cut(s) 91, 484, 502, 532
FauNDI CATATG 1 cut(s) 280
FblI GTMKAC 1 cut(s) 601
Fnu4HI GCNGC 1 cut(s) 549
FokI GGATG 1 cut(s) 540
FriOI GRGCYC 1 cut(s) 112
Fsp4HI GCNGC 1 cut(s) 549
FspBI CTAG 1 cut(s) 119
GluI GCNGC 1 cut(s) 549
HaeIII GGCC 1 cut(s) 661
Hin1II CATG 4 cut(s) 95, 488, 506, 536
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HinfI GANTC 1 cut(s) 149
HphI GGTGA 1 cut(s) 260
Hpy166II GTNNAC 3 cut(s) 263, 358, 602
Hpy188I TCNGA 4 cut(s) 132, 516, 562, 667
Hpy8I GTNNAC 3 cut(s) 263, 358, 602
HpyAV CCTTC 3 cut(s) 61, 251, 428
HpyCH4III ACNGT 2 cut(s) 379, 581
HpyCH4V TGCA 4 cut(s) 45, 481, 536, 551
HpyF3I CTNAG 5 cut(s) 341, 401, 459, 559, 605
Hsp92II CATG 4 cut(s) 95, 488, 506, 536
KpnI GGTACC 1 cut(s) 315
Kzo9I GATC 5 cut(s) 293, 365, 538, 555, 586
LmnI GCTCC 2 cut(s) 107, 115
LpnPI CCDG 6 cut(s) 144, 219, 231, 279, 322, 558
Lsp1109I GCAGC 1 cut(s) 535
LweI GCATC 3 cut(s) 490, 518, 625
MaeI CTAG 1 cut(s) 119
MaeIII GTNAC 4 cut(s) 70, 124, 161, 424
MalI GATC 5 cut(s) 295, 367, 540, 557, 588
MboI GATC 5 cut(s) 293, 365, 538, 555, 586
MboII GAAGA 4 cut(s) 147, 385, 533, 644
MflI RGATCY 3 cut(s) 365, 538, 555
MhlI GDGCHC 1 cut(s) 112
MlsI TGGCCA 1 cut(s) 661
MluCI AATT 3 cut(s) 55, 473, 627
MluNI TGGCCA 1 cut(s) 661
MmeI TCCRAC 3 cut(s) 469, 479, 600
MnlI CCTC 5 cut(s) 163, 199, 277, 355, 499
Mox20I TGGCCA 1 cut(s) 661
Mph1103I ATGCAT 1 cut(s) 483
MscI TGGCCA 1 cut(s) 661
MseI TTAA 4 cut(s) 53, 140, 395, 476
Msp20I TGGCCA 1 cut(s) 661
NdeI CATATG 1 cut(s) 280
NdeII GATC 5 cut(s) 293, 365, 538, 555, 586
NlaIII CATG 4 cut(s) 95, 488, 506, 536
NlaIV GGNNCC 2 cut(s) 187, 313
NmuCI GTSAC 1 cut(s) 124
NsiI ATGCAT 1 cut(s) 483
PfeI GAWTC 1 cut(s) 149
PkrI GCNGC 1 cut(s) 550
PshAI GACNNNNGTC 1 cut(s) 415
PshBI ATTAAT 1 cut(s) 476
Psp124BI GAGCTC 1 cut(s) 112
PspEI GGTNACC 1 cut(s) 161
PspN4I GGNNCC 2 cut(s) 187, 313
PstNI CAGNNNCTG 1 cut(s) 272
PsuI RGATCY 3 cut(s) 365, 538, 555
RsaI GTAC 4 cut(s) 18, 244, 313, 646
RsaNI GTAC 4 cut(s) 17, 243, 312, 645
SacI GAGCTC 1 cut(s) 112
SaqAI TTAA 4 cut(s) 53, 140, 395, 476
SatI GCNGC 1 cut(s) 549
Sau3AI GATC 5 cut(s) 293, 365, 538, 555, 586
SduI GDGCHC 1 cut(s) 112
SfaNI GCATC 3 cut(s) 490, 518, 625
SmlI CTYRAG 1 cut(s) 289
SmoI CTYRAG 1 cut(s) 289
Sse9I AATT 3 cut(s) 55, 473, 627
SspI AATATT 1 cut(s) 614
SspMI CTAG 1 cut(s) 119
SstI GAGCTC 1 cut(s) 112
TaaI ACNGT 2 cut(s) 379, 581
TaqI TCGA 1 cut(s) 191
TasI AATT 3 cut(s) 55, 473, 627
TatI WGTACW 1 cut(s) 16
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 4 cut(s) 53, 140, 395, 476
Tru9I TTAA 4 cut(s) 53, 140, 395, 476
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 1 cut(s) 548
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 3 cut(s) 267, 386, 584
VspI ATTAAT 1 cut(s) 476
XapI RAATTY 1 cut(s) 55
XmiI GTMKAC 1 cut(s) 601
XspI CTAG 1 cut(s) 119
Zsp2I ATGCAT 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.