Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010722

Physical Location & Seq

Genomic Coordinates Forward (+)

5286825 .. 5288882

Gene Structure 2058 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0060700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGTTGTGGTAACTTTTCAGGCATTGGAAGAAAACAAGCTGTTCGTACTAGACTATCATGACATTTTCCTTCCGTTTATCAACCAAATAAATGCTATGGATGACCGAAAAGCTTATGCAACACGTACAATTTTCTTCCTCACCCCATTGGGAACATTGAAGCCCATTGCTATTGAGCTCAGTCTCCAACAAACCAATTCAAATTCACCATCCAGGCAGGTTCTCACTCCTCCAGTTGATGCTACAACATATTGGCTTTGGGAACTTGGCAAAGCTCATGTATGCTCCAATGATTCTTGCGTTCATCAACTCATTAATCACTGGTTACGCTCCCATGCGTGTATGGAACCATTTATCATAGCAACTCACCGGCAGCTGAGTGCGATGCATCCCGTCTATAGACTTCTCAAGCCTCACATTCGATACACAATGAAGATAAATGCATTGGCCCGTCAGTTTCTGATCAATTCTGAAGGAATAATTGAGTCTACTTTTACTGATGGCAAACATAGCATGGAGATTAGTTGTGCTGCATATCGAGACTGGTGGCGTTTTGACCTTGAGGGCCTTCCTGCAGATCTCATTAGAAGAGGAATATATAGCAATACCAGACCCCGGTCAGGTCCATGGACTAAGACTACTGATCGAAGATTATCCTTACGCAACAGATGGGTTCCTCATATGAACTGCAAGCCTGGCACAAGGAATGGATCAATTAATTCAGGCCATGCAGACCTTCGCCATGCTAGCTGGTGGCCAAAACTCTCTACTCCAGATGATCTTGCCTCCATTCTCACCACCATCATTTGGCTCTCATCAGCATACCACGCAGCATTGAACTATGGGCAGTATCCATATGGCGGATATGTCCCAGCCCGCCCACCACACATGCGGAGACTACTGCCACAAGAGCATGAACTAGAATTTTCTATGGATATGAGGAGGATTGAAAAGGAGATTGAACGAAGAAATGCCGATTCAAGACTGCGTAACAGATGTGGGGCAGGGAATATTCCACCATACGAGCTGCTCATGCCAAGCTCAGAACCTGGGGTTACAGCCAGAGGAGTGCCTAATAGTATATCAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc

Protein Analysis

363

Amino Acids

41.72

Weight (kDa)

9.3

Isoelectric Point (pI)

55.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipoxygenase	PF00305	7 - 200	5.4e-99	Lipoxygenase
Lipoxygenase	PF00305	239 - 308	2.7e-27	Lipoxygenase
Lipoxygenase	PF00305	308 - 346	8e-07	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08720
fragaria_vesca	FvH4_3g12600 FvH4_3g12600 FvH4_3g12600 FvH4_3g12600
malus_domestica	MD05G1249400.v1.1
prunus_persica	Prupe.4G114800_v2.0.a1 Prupe.4G114800_v2.0.a1
pyrus_communis	pycom05g22650
rosa_chinensis	RchiOBHm_Chr5g0020561
rosa_multiflora	Rmu_sc0018120.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057730
rosa_rugosa	Rorug05G0060700 Rorug05G0060800 Rorug05G0060900
rosa_samantha	Rh5AG151200 Rh5BG150600 Rh5CG162100 Rh5DG150000
rosa_wichuraiana	Rw5G013380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	208
AccB7I	CCANNNNNTGG	1 cut(s)	807
AccI	GTMKAC	1 cut(s)	488
AciI	CCGC	3 cut(s)	861, 877, 892
AclWI	GGATC	1 cut(s)	718
AcoI	YGGCCR	1 cut(s)	755
AcsI	RAATTY	2 cut(s)	202, 923
AcuI	CTGAAG	1 cut(s)	492
AfaI	GTAC	2 cut(s)	48, 127
AfiI	CCNNNNNNNGG	4 cut(s)	615, 620, 807, 860
AflIII	ACRYGT	1 cut(s)	122
AgsI	TTSAA	6 cut(s)	160, 201, 838, 950, 962, 981
AjnI	CCWGG	3 cut(s)	212, 694, 1048
AluBI	AGCT	8 cut(s)	40, 113, 178, 275, 376, 750, 1027, 1041
AluI	AGCT	8 cut(s)	40, 113, 178, 275, 376, 750, 1027, 1041
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	3 cut(s)	188, 534, 889
AlwI	GGATC	1 cut(s)	718
AlwNI	CAGNNNCTG	2 cut(s)	460, 1049
AoxI	GGCC	4 cut(s)	447, 565, 724, 755
ApeKI	GCWGC	4 cut(s)	373, 530, 830, 1027
ApoI	RAATTY	2 cut(s)	202, 923
AseI	ATTAAT	2 cut(s)	315, 717
AspS9I	GGNCC	3 cut(s)	448, 565, 623
AsuC2I	CCSGG	1 cut(s)	616
AsuHPI	GGTGA	4 cut(s)	133, 198, 359, 787
AsuNHI	GCTAGC	1 cut(s)	746
AvaII	GGWCC	1 cut(s)	623
BalI	TGGCCA	1 cut(s)	757
BanII	GRGCYC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	4 cut(s)	385, 517, 842, 1014
BccI	CCATC	4 cut(s)	217, 494, 663, 809
BciT130I	CCWGG	3 cut(s)	214, 696, 1050
BciVI	GTATCC	1 cut(s)	861
BclI	TGATCA	1 cut(s)	462
BcnI	CCSGG	1 cut(s)	616
BcoDI	GTCTC	3 cut(s)	188, 534, 889
BfaI	CTAG	3 cut(s)	50, 747, 920
BfmI	CTRYAG	2 cut(s)	397, 573
BfuAI	ACCTGC	1 cut(s)	208
BfuI	GTATCC	1 cut(s)	861
BglII	AGATCT	1 cut(s)	577
BisI	GCNGC	4 cut(s)	374, 531, 831, 1028
BlsI	GCNGC	4 cut(s)	375, 532, 832, 1029
Bme1390I	CCNGG	4 cut(s)	214, 616, 696, 1050
Bme18I	GGWCC	1 cut(s)	623
BmgT120I	GGNCC	3 cut(s)	448, 565, 623
BmiI	GGNNCC	2 cut(s)	348, 675
BmrFI	CCNGG	4 cut(s)	214, 616, 696, 1050
BmsI	GCATC	3 cut(s)	229, 375, 397
BmtI	GCTAGC	1 cut(s)	750
BoxI	GACNNNNGTC	1 cut(s)	616
BpmI	CTGGAG	2 cut(s)	216, 756
BpuEI	CTTGAG	2 cut(s)	392, 581
BpuMI	CCSGG	1 cut(s)	616
BsaAI	YACGTR	1 cut(s)	125
BsaJI	CCNNGG	3 cut(s)	614, 626, 1049
Bsc4I	CCNNNNNNNGG	4 cut(s)	615, 620, 807, 860
Bse118I	RCCGGY	1 cut(s)	369
Bse1I	ACTGG	3 cut(s)	233, 326, 548
Bse3DI	GCAATG	1 cut(s)	165
BseBI	CCWGG	3 cut(s)	214, 696, 1050
BseDI	CCNNGG	3 cut(s)	614, 626, 1049
BseGI	GGATG	3 cut(s)	106, 209, 388
BseLI	CCNNNNNNNGG	4 cut(s)	615, 620, 807, 860
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	3 cut(s)	193, 368, 1056
BseNI	ACTGG	3 cut(s)	233, 326, 548
BseRI	GAGGAG	3 cut(s)	219, 955, 1080
BseXI	GCAGC	4 cut(s)	385, 517, 842, 1014
BseYI	CCCAGC	1 cut(s)	871
BshFI	GGCC	4 cut(s)	449, 567, 726, 757
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	2 cut(s)	370, 616
BslFI	GGGAC	1 cut(s)	854
BslI	CCNNNNNNNGG	4 cut(s)	615, 620, 807, 860
BsmAI	GTCTC	3 cut(s)	188, 534, 889
BsmFI	GGGAC	1 cut(s)	854
BsnI	GGCC	4 cut(s)	449, 567, 726, 757
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	5 cut(s)	462, 577, 643, 710, 778
Bsp19I	CCATGG	1 cut(s)	626
BspACI	CCGC	3 cut(s)	861, 877, 892
BspANI	GGCC	4 cut(s)	449, 567, 726, 757
BspCNI	CTCAG	3 cut(s)	192, 369, 1055
BspHI	TCATGA	1 cut(s)	58
BspLI	GGNNCC	2 cut(s)	348, 675
BspMAI	CTGCAG	1 cut(s)	577
BspMI	ACCTGC	1 cut(s)	208
BspOI	GCTAGC	1 cut(s)	750
BspPI	GGATC	1 cut(s)	718
BsrDI	GCAATG	1 cut(s)	165
BsrFI	RCCGGY	1 cut(s)	369
BsrI	ACTGG	3 cut(s)	233, 326, 548
BssAI	RCCGGY	1 cut(s)	369
BssECI	CCNNGG	3 cut(s)	614, 626, 1049
BssMI	GATC	5 cut(s)	462, 577, 643, 710, 778
BssT1I	CCWWGG	1 cut(s)	626
Bst2UI	CCWGG	3 cut(s)	214, 696, 1050
Bst6I	CTCTTC	1 cut(s)	583
BstBAI	YACGTR	1 cut(s)	125
BstC8I	GCNNGC	3 cut(s)	692, 748, 877
BstDEI	CTNAG	4 cut(s)	179, 377, 633, 1042
BstDSI	CCRYGG	1 cut(s)	626
BstF5I	GGATG	3 cut(s)	106, 209, 388
BstKTI	GATC	5 cut(s)	465, 580, 646, 713, 781
BstMAI	GTCTC	3 cut(s)	188, 534, 889
BstMBI	GATC	5 cut(s)	462, 577, 643, 710, 778
BstMWI	GCNNNNNNNGC	6 cut(s)	510, 696, 747, 827, 910, 1033
BstNI	CCWGG	3 cut(s)	214, 696, 1050
BstNSI	RCATGY	1 cut(s)	892
BstPAI	GACNNNNGTC	1 cut(s)	616
BstSCI	CCNGG	4 cut(s)	212, 614, 694, 1048
BstSFI	CTRYAG	2 cut(s)	397, 573
BstV1I	GCAGC	4 cut(s)	385, 517, 842, 1014
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
BsuI	GTATCC	1 cut(s)	861
BsuRI	GGCC	4 cut(s)	449, 567, 726, 757
BtgI	CCRYGG	1 cut(s)	626
BtgZI	GCGATG	1 cut(s)	398
BtsCI	GGATG	3 cut(s)	106, 209, 388
BtsIMutI	CAGTG	1 cut(s)	319
BveI	ACCTGC	1 cut(s)	208
Cac8I	GCNNGC	3 cut(s)	692, 748, 877
CaiI	CAGNNNCTG	2 cut(s)	460, 1049
CciI	TCATGA	1 cut(s)	58
Cfr10I	RCCGGY	1 cut(s)	369
Cfr13I	GGNCC	3 cut(s)	448, 565, 623
Csp6I	GTAC	2 cut(s)	47, 126
CviQI	GTAC	2 cut(s)	47, 126
DdeI	CTNAG	4 cut(s)	179, 377, 633, 1042
DpnI	GATC	5 cut(s)	464, 579, 645, 712, 780
DpnII	GATC	5 cut(s)	462, 577, 643, 710, 778
EaeI	YGGCCR	1 cut(s)	755
Eam1104I	CTCTTC	1 cut(s)	583
EarI	CTCTTC	1 cut(s)	583
EciI	GGCGGA	1 cut(s)	876
Ecl136II	GAGCTC	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	626
Eco24I	GRGCYC	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	623
Eco53kI	GAGCTC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	492
EcoICRI	GAGCTC	1 cut(s)	178
EcoO109I	RGGNCCY	1 cut(s)	565
EcoRII	CCWGG	3 cut(s)	212, 694, 1048
EcoT14I	CCWWGG	1 cut(s)	626
EcoT22I	ATGCAT	2 cut(s)	390, 445
EcoT38I	GRGCYC	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	626
FaqI	GGGAC	1 cut(s)	854
FauI	CCCGC	1 cut(s)	884
FauNDI	CATATG	2 cut(s)	681, 856
FbaI	TGATCA	1 cut(s)	462
FblI	GTMKAC	1 cut(s)	488
Fnu4HI	GCNGC	4 cut(s)	374, 531, 831, 1028
FokI	GGATG	3 cut(s)	113, 196, 375
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	4 cut(s)	374, 531, 831, 1028
FspBI	CTAG	3 cut(s)	50, 747, 920
GluI	GCNGC	4 cut(s)	374, 531, 831, 1028
GsaI	CCCAGC	1 cut(s)	875
GsuI	CTGGAG	2 cut(s)	216, 756
HaeIII	GGCC	4 cut(s)	449, 567, 726, 757
HapII	CCGG	2 cut(s)	370, 616
HindIII	AAGCTT	1 cut(s)	111
HinfI	GANTC	3 cut(s)	293, 485, 977
HpaII	CCGG	2 cut(s)	370, 616
HphI	GGTGA	4 cut(s)	133, 198, 359, 787
Hpy166II	GTNNAC	1 cut(s)	489
Hpy188I	TCNGA	3 cut(s)	462, 472, 1045
Hpy188III	TCNNGA	4 cut(s)	59, 539, 773, 981
Hpy8I	GTNNAC	1 cut(s)	489
HpyAV	CCTTC	4 cut(s)	80, 467, 578, 746
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	7 cut(s)	119, 388, 443, 533, 575, 690, 731
HpyF10VI	GCNNNNNNNGC	6 cut(s)	510, 696, 747, 827, 910, 1033
HpyF3I	CTNAG	4 cut(s)	179, 377, 633, 1042
HpySE526I	ACGT	1 cut(s)	124
Ksp22I	TGATCA	1 cut(s)	462
Kzo9I	GATC	5 cut(s)	462, 577, 643, 710, 778
LmnI	GCTCC	2 cut(s)	290, 335
Lsp1109I	GCAGC	4 cut(s)	385, 517, 842, 1014
LweI	GCATC	3 cut(s)	229, 375, 397
MaeI	CTAG	3 cut(s)	50, 747, 920
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	4 cut(s)	10, 324, 989, 1054
MalI	GATC	5 cut(s)	464, 579, 645, 712, 780
MboI	GATC	5 cut(s)	462, 577, 643, 710, 778
MboII	GAAGA	6 cut(s)	41, 127, 445, 600, 660, 978
MflI	RGATCY	1 cut(s)	577
MhlI	GDGCHC	1 cut(s)	180
MlsI	TGGCCA	1 cut(s)	757
MluCI	AATT	9 cut(s)	129, 196, 202, 466, 480, 714, 718, 923, 1086
MluNI	TGGCCA	1 cut(s)	757
MlyI	GAGTC	1 cut(s)	494
MmeI	TCCRAC	1 cut(s)	211
Mox20I	TGGCCA	1 cut(s)	757
Mph1103I	ATGCAT	2 cut(s)	390, 445
MscI	TGGCCA	1 cut(s)	757
MseI	TTAA	3 cut(s)	315, 717, 1090
Msp20I	TGGCCA	1 cut(s)	757
MspA1I	CMGCKG	1 cut(s)	376
MspI	CCGG	2 cut(s)	370, 616
MspR9I	CCNGG	4 cut(s)	214, 616, 696, 1050
MvaI	CCWGG	3 cut(s)	214, 696, 1050
MwoI	GCNNNNNNNGC	6 cut(s)	510, 696, 747, 827, 910, 1033
NciI	CCSGG	1 cut(s)	616
NcoI	CCATGG	1 cut(s)	626
NdeI	CATATG	2 cut(s)	681, 856
NdeII	GATC	5 cut(s)	462, 577, 643, 710, 778
NheI	GCTAGC	1 cut(s)	746
NlaIV	GGNNCC	2 cut(s)	348, 675
NsiI	ATGCAT	2 cut(s)	390, 445
NspI	RCATGY	1 cut(s)	892
PagI	TCATGA	1 cut(s)	58
PfeI	GAWTC	2 cut(s)	293, 977
PflMI	CCANNNNNTGG	1 cut(s)	807
PkrI	GCNGC	4 cut(s)	375, 532, 832, 1029
PleI	GAGTC	1 cut(s)	493
PpsI	GAGTC	1 cut(s)	493
Ppu21I	YACGTR	1 cut(s)	125
PshAI	GACNNNNGTC	1 cut(s)	616
PshBI	ATTAAT	2 cut(s)	315, 717
Psp124BI	GAGCTC	1 cut(s)	180
Psp6I	CCWGG	3 cut(s)	212, 694, 1048
PspFI	CCCAGC	1 cut(s)	871
PspGI	CCWGG	3 cut(s)	212, 694, 1048
PspN4I	GGNNCC	2 cut(s)	348, 675
PspPI	GGNCC	3 cut(s)	448, 565, 623
PstI	CTGCAG	1 cut(s)	577
PstNI	CAGNNNCTG	2 cut(s)	460, 1049
PsuI	RGATCY	1 cut(s)	577
PvuII	CAGCTG	1 cut(s)	376
RsaI	GTAC	2 cut(s)	48, 127
RsaNI	GTAC	2 cut(s)	47, 126
SacI	GAGCTC	1 cut(s)	180
SaqAI	TTAA	3 cut(s)	315, 717, 1090
SatI	GCNGC	4 cut(s)	374, 531, 831, 1028
Sau3AI	GATC	5 cut(s)	462, 577, 643, 710, 778
Sau96I	GGNCC	3 cut(s)	448, 565, 623
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	4 cut(s)	214, 616, 696, 1050
SduI	GDGCHC	1 cut(s)	180
SfaNI	GCATC	3 cut(s)	229, 375, 397
SfcI	CTRYAG	2 cut(s)	397, 573
SinI	GGWCC	1 cut(s)	623
SmlI	CTYRAG	2 cut(s)	407, 560
SmoI	CTYRAG	2 cut(s)	407, 560
Sse9I	AATT	9 cut(s)	129, 196, 202, 466, 480, 714, 718, 923, 1086
SsiI	CCGC	3 cut(s)	861, 877, 892
SspI	AATATT	1 cut(s)	1012
SspMI	CTAG	3 cut(s)	50, 747, 920
SstI	GAGCTC	1 cut(s)	180
StyD4I	CCNGG	4 cut(s)	212, 614, 694, 1048
StyI	CCWWGG	1 cut(s)	626
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	3 cut(s)	421, 538, 646
TaqII	GACCGA	1 cut(s)	120
TasI	AATT	9 cut(s)	129, 196, 202, 466, 480, 714, 718, 923, 1086
TfiI	GAWTC	2 cut(s)	293, 977
Tru1I	TTAA	3 cut(s)	315, 717, 1090
Tru9I	TTAA	3 cut(s)	315, 717, 1090
TscAI	CASTG	1 cut(s)	326
TseI	GCWGC	4 cut(s)	373, 530, 830, 1027
TspDTI	ATGAA	4 cut(s)	293, 446, 698, 930
TspGWI	ACGGA	1 cut(s)	63
TspRI	CASTG	1 cut(s)	326
Van91I	CCANNNNNTGG	1 cut(s)	807
VpaK11BI	GGWCC	1 cut(s)	623
VspI	ATTAAT	2 cut(s)	315, 717
XapI	RAATTY	2 cut(s)	202, 923
XceI	RCATGY	1 cut(s)	892
XmiI	GTMKAC	1 cut(s)	488
XspI	CTAG	3 cut(s)	50, 747, 920
Zsp2I	ATGCAT	2 cut(s)	390, 445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.