Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010722

Physical Location & Seq

Genomic Coordinates Forward (+)

5292168 .. 5293505

Gene Structure 1338 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0060900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGAAACATTTATCATAGCAACCCACCGGCAGCTGAGTGCGATGCATCCCATCTACAGGCTTCTCAAACCTCACATGCGACACACAATGAAGATACATGCATTGGCCCGTCAGTTTCTGATCAATTCTGAAGGAATAATCGAGTCTACTTTAACTGCTGGCAAACATAGCATGGAGATTAGTTGTGCTGCCTATCGAGACTGGTGGCGTTTTGACCTTGAGGGCCTTCCTGCAGATCTCATCAGAAGAGGAATAGCAATACCAGACCCCAGTCAGGTCCATGGACTAAGACTACTGATTGAAGATTATCCTTACGCAGCAGATGGACTCCTCATATGGTCAGCAATTGAGAGATTGGTTCAAACCTATGTCCGTTATTACTATCCTGATGCAACTGCGGTTGATTCTGATACAGAACTGCAAGCCTGGTACAAGGAATGGATCAATTTAGGCCATGCCGATCTTCGCCATGCTAGCTGGTGGCAGTATCCATATGGTGGATATGTCCCAACCCGCCCACCACACATGCGGAGACTACTGCCACAAGAGCATGAACTAGAGTATGCTACTTTCATTAAGGATCCAGAGAAATATTTTCTATCGTCATTGCCAGATTTACTCGAAACAATAAAATATATGGCTGTGCTAGATATCATCTCAGCGCACTCCCCGGATGAGGAGTATATTGGGGAAAGAAAAGACTTGTCCACTTGGTCAGCTGACCCAGTTATCATTGAGGCATTCTACAGATTTTCAATGGATATGAAGATGATTGAAAAGGAGATTGAACAACGAAATGCCGATTCAAGACTACGTAACAGATGTGGGGCTGGGGTTTCACCATATGAGCTGCTCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc

Protein Analysis

286

Amino Acids

33.42

Weight (kDa)

5.74

Isoelectric Point (pI)

50.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipoxygenase	PF00305	1 - 162	1.6e-80	Lipoxygenase
Lipoxygenase	PF00305	162 - 285	1.2e-42	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08720
fragaria_vesca	FvH4_3g12600 FvH4_3g12600 FvH4_3g12600 FvH4_3g12600
malus_domestica	MD05G1249400.v1.1
prunus_persica	Prupe.4G114800_v2.0.a1 Prupe.4G114800_v2.0.a1
pyrus_communis	pycom05g22650
rosa_chinensis	RchiOBHm_Chr5g0020561
rosa_multiflora	Rmu_sc0018120.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057730
rosa_rugosa	Rorug05G0060700 Rorug05G0060800 Rorug05G0060900
rosa_samantha	Rh5AG151200 Rh5BG150600 Rh5CG162100 Rh5DG150000
rosa_wichuraiana	Rw5G013380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	497
AccI	GTMKAC	1 cut(s)	146
AciI	CCGC	3 cut(s)	398, 514, 529
AclWI	GGATC	3 cut(s)	449, 575, 588
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	4 cut(s)	57, 274, 497, 676
AgsI	TTSAA	6 cut(s)	302, 362, 756, 776, 788, 807
AjnI	CCWGG	1 cut(s)	425
AluBI	AGCT	4 cut(s)	34, 477, 719, 850
AluI	AGCT	4 cut(s)	34, 477, 719, 850
Alw26I	GTCTC	2 cut(s)	192, 526
AlwI	GGATC	3 cut(s)	449, 575, 588
AlwNI	CAGNNNCTG	1 cut(s)	118
AoxI	GGCC	3 cut(s)	105, 223, 451
ApeKI	GCWGC	4 cut(s)	31, 188, 317, 850
AspLEI	GCGC	1 cut(s)	664
AspS9I	GGNCC	3 cut(s)	106, 223, 277
AsuC2I	CCSGG	1 cut(s)	671
AsuHPI	GGTGA	1 cut(s)	831
AsuNHI	GCTAGC	1 cut(s)	473
AvaII	GGWCC	1 cut(s)	277
BamHI	GGATCC	1 cut(s)	580
BauI	CACGAG	1 cut(s)	854
BbvI	GCAGC	4 cut(s)	43, 175, 329, 837
BccI	CCATC	2 cut(s)	59, 317
BciT130I	CCWGG	1 cut(s)	427
BciVI	GTATCC	1 cut(s)	498
BclI	TGATCA	1 cut(s)	120
BcnI	CCSGG	1 cut(s)	671
BcoDI	GTCTC	2 cut(s)	192, 526
BfaI	CTAG	3 cut(s)	474, 557, 647
BfmI	CTRYAG	3 cut(s)	55, 231, 745
BfuI	GTATCC	1 cut(s)	498
BglII	AGATCT	1 cut(s)	235
BisI	GCNGC	4 cut(s)	32, 189, 318, 851
BlsI	GCNGC	4 cut(s)	33, 190, 319, 852
Bme1390I	CCNGG	2 cut(s)	427, 671
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	3 cut(s)	106, 223, 277
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	2 cut(s)	427, 671
BmrI	ACTGGG	2 cut(s)	264, 719
BmsI	GCATC	3 cut(s)	33, 55, 379
BmtI	GCTAGC	1 cut(s)	477
BmuI	ACTGGG	2 cut(s)	264, 719
BoxI	GACNNNNGTC	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	671
BsaAI	YACGTR	1 cut(s)	815
BsaJI	CCNNGG	2 cut(s)	280, 669
Bsc4I	CCNNNNNNNGG	4 cut(s)	57, 274, 497, 676
Bse118I	RCCGGY	1 cut(s)	27
Bse1I	ACTGG	3 cut(s)	206, 270, 725
Bse3DI	GCAATG	1 cut(s)	605
BseBI	CCWGG	1 cut(s)	427
BseDI	CCNNGG	2 cut(s)	280, 669
BseGI	GGATG	2 cut(s)	46, 679
BseLI	CCNNNNNNNGG	4 cut(s)	57, 274, 497, 676
BseMI	GCAATG	1 cut(s)	605
BseMII	CTCAG	2 cut(s)	26, 672
BseNI	ACTGG	3 cut(s)	206, 270, 725
BseRI	GAGGAG	2 cut(s)	320, 692
BseXI	GCAGC	4 cut(s)	43, 175, 329, 837
BseYI	CCCAGC	1 cut(s)	830
BshFI	GGCC	3 cut(s)	107, 225, 453
BsiSI	CCGG	2 cut(s)	28, 671
BslFI	GGGAC	1 cut(s)	491
BslI	CCNNNNNNNGG	4 cut(s)	57, 274, 497, 676
BsmAI	GTCTC	2 cut(s)	192, 526
BsmFI	GGGAC	1 cut(s)	491
BsmI	GAATGC	1 cut(s)	740
BsnI	GGCC	3 cut(s)	107, 225, 453
Bsp143I	GATC	5 cut(s)	120, 235, 441, 460, 580
Bsp19I	CCATGG	1 cut(s)	280
BspACI	CCGC	3 cut(s)	398, 514, 529
BspANI	GGCC	3 cut(s)	107, 225, 453
BspCNI	CTCAG	2 cut(s)	27, 671
BspLI	GGNNCC	1 cut(s)	582
BspMAI	CTGCAG	1 cut(s)	235
BspOI	GCTAGC	1 cut(s)	477
BspPI	GGATC	3 cut(s)	449, 575, 588
BsrDI	GCAATG	1 cut(s)	605
BsrFI	RCCGGY	1 cut(s)	27
BsrI	ACTGG	3 cut(s)	206, 270, 725
BssAI	RCCGGY	1 cut(s)	27
BssECI	CCNNGG	2 cut(s)	280, 669
BssMI	GATC	5 cut(s)	120, 235, 441, 460, 580
BssSI	CACGAG	1 cut(s)	854
BssT1I	CCWWGG	1 cut(s)	280
Bst2BI	CACGAG	1 cut(s)	854
Bst2UI	CCWGG	1 cut(s)	427
Bst6I	CTCTTC	1 cut(s)	241
BstBAI	YACGTR	1 cut(s)	815
BstC8I	GCNNGC	3 cut(s)	160, 423, 475
BstDEI	CTNAG	3 cut(s)	35, 287, 658
BstDSI	CCRYGG	1 cut(s)	280
BstF5I	GGATG	2 cut(s)	46, 679
BstHHI	GCGC	1 cut(s)	664
BstKTI	GATC	5 cut(s)	123, 238, 444, 463, 583
BstMAI	GTCTC	2 cut(s)	192, 526
BstMBI	GATC	5 cut(s)	120, 235, 441, 460, 580
BstMWI	GCNNNNNNNGC	3 cut(s)	168, 474, 547
BstNI	CCWGG	1 cut(s)	427
BstNSI	RCATGY	3 cut(s)	79, 101, 529
BstPAI	GACNNNNGTC	1 cut(s)	270
BstSCI	CCNGG	2 cut(s)	425, 669
BstSFI	CTRYAG	3 cut(s)	55, 231, 745
BstSNI	TACGTA	1 cut(s)	815
BstV1I	GCAGC	4 cut(s)	43, 175, 329, 837
BstX2I	RGATCY	2 cut(s)	235, 580
BstYI	RGATCY	2 cut(s)	235, 580
BsuI	GTATCC	1 cut(s)	498
BsuRI	GGCC	3 cut(s)	107, 225, 453
BtgI	CCRYGG	1 cut(s)	280
BtgZI	GCGATG	1 cut(s)	56
BtsCI	GGATG	2 cut(s)	46, 679
Cac8I	GCNNGC	3 cut(s)	160, 423, 475
CaiI	CAGNNNCTG	1 cut(s)	118
CfoI	GCGC	1 cut(s)	664
Cfr10I	RCCGGY	1 cut(s)	27
Cfr13I	GGNCC	3 cut(s)	106, 223, 277
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	8 cut(s)	76, 98, 172, 281, 455, 470, 526, 551
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	3 cut(s)	35, 287, 658
DpnI	GATC	5 cut(s)	122, 237, 443, 462, 582
DpnII	GATC	5 cut(s)	120, 235, 441, 460, 580
Eam1104I	CTCTTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	241
Eco105I	TACGTA	1 cut(s)	815
Eco130I	CCWWGG	1 cut(s)	280
Eco32I	GATATC	1 cut(s)	652
Eco47I	GGWCC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	425
EcoRV	GATATC	1 cut(s)	652
EcoT14I	CCWWGG	1 cut(s)	280
EcoT22I	ATGCAT	2 cut(s)	48, 103
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	8 cut(s)	79, 101, 175, 284, 458, 473, 529, 554
FaqI	GGGAC	1 cut(s)	491
FatI	CATG	8 cut(s)	75, 97, 171, 280, 454, 469, 525, 550
FauI	CCCGC	1 cut(s)	521
FauNDI	CATATG	3 cut(s)	335, 493, 844
FbaI	TGATCA	1 cut(s)	120
FblI	GTMKAC	1 cut(s)	146
Fnu4HI	GCNGC	4 cut(s)	32, 189, 318, 851
FokI	GGATG	2 cut(s)	33, 686
Fsp4HI	GCNGC	4 cut(s)	32, 189, 318, 851
FspBI	CTAG	3 cut(s)	474, 557, 647
GlaI	GCGC	1 cut(s)	663
GluI	GCNGC	4 cut(s)	32, 189, 318, 851
GsaI	CCCAGC	1 cut(s)	834
HaeIII	GGCC	3 cut(s)	107, 225, 453
HapII	CCGG	2 cut(s)	28, 671
HhaI	GCGC	1 cut(s)	664
Hin1II	CATG	8 cut(s)	79, 101, 175, 284, 458, 473, 529, 554
Hin6I	GCGC	1 cut(s)	662
HinP1I	GCGC	1 cut(s)	662
HinfI	GANTC	4 cut(s)	143, 327, 404, 803
HpaII	CCGG	2 cut(s)	28, 671
HphI	GGTGA	1 cut(s)	831
Hpy166II	GTNNAC	2 cut(s)	147, 708
Hpy188I	TCNGA	4 cut(s)	120, 130, 245, 409
Hpy188III	TCNNGA	4 cut(s)	197, 386, 584, 807
Hpy8I	GTNNAC	2 cut(s)	147, 708
HpyAV	CCTTC	2 cut(s)	125, 236
HpyCH4IV	ACGT	1 cut(s)	814
HpyCH4V	TGCA	5 cut(s)	46, 101, 233, 392, 421
HpyF10VI	GCNNNNNNNGC	3 cut(s)	168, 474, 547
HpyF3I	CTNAG	3 cut(s)	35, 287, 658
HpySE526I	ACGT	1 cut(s)	814
Hsp92II	CATG	8 cut(s)	79, 101, 175, 284, 458, 473, 529, 554
HspAI	GCGC	1 cut(s)	662
Ksp22I	TGATCA	1 cut(s)	120
Kzo9I	GATC	5 cut(s)	120, 235, 441, 460, 580
Lsp1109I	GCAGC	4 cut(s)	43, 175, 329, 837
LweI	GCATC	3 cut(s)	33, 55, 379
MaeI	CTAG	3 cut(s)	474, 557, 647
MaeII	ACGT	1 cut(s)	814
MaeIII	GTNAC	1 cut(s)	815
MalI	GATC	5 cut(s)	122, 237, 443, 462, 582
MboI	GATC	5 cut(s)	120, 235, 441, 460, 580
MboII	GAAGA	5 cut(s)	103, 258, 314, 455, 778
MfeI	CAATTG	1 cut(s)	345
MflI	RGATCY	2 cut(s)	235, 580
MluCI	AATT	3 cut(s)	124, 345, 445
MlyI	GAGTC	2 cut(s)	152, 321
MnlI	CCTC	6 cut(s)	81, 214, 242, 341, 670, 730
Mph1103I	ATGCAT	2 cut(s)	48, 103
MseI	TTAA	2 cut(s)	152, 576
MspA1I	CMGCKG	2 cut(s)	34, 719
MspI	CCGG	2 cut(s)	28, 671
MspR9I	CCNGG	2 cut(s)	427, 671
MunI	CAATTG	1 cut(s)	345
Mva1269I	GAATGC	1 cut(s)	740
MvaI	CCWGG	1 cut(s)	427
MwoI	GCNNNNNNNGC	3 cut(s)	168, 474, 547
NciI	CCSGG	1 cut(s)	671
NcoI	CCATGG	1 cut(s)	280
NdeI	CATATG	3 cut(s)	335, 493, 844
NdeII	GATC	5 cut(s)	120, 235, 441, 460, 580
NheI	GCTAGC	1 cut(s)	473
NlaIII	CATG	8 cut(s)	79, 101, 175, 284, 458, 473, 529, 554
NlaIV	GGNNCC	1 cut(s)	582
NsiI	ATGCAT	2 cut(s)	48, 103
NspI	RCATGY	3 cut(s)	79, 101, 529
PctI	GAATGC	1 cut(s)	740
PfeI	GAWTC	2 cut(s)	404, 803
PflMI	CCANNNNNTGG	1 cut(s)	497
PkrI	GCNGC	4 cut(s)	33, 190, 319, 852
PleI	GAGTC	2 cut(s)	151, 321
PpsI	GAGTC	2 cut(s)	151, 321
Ppu21I	YACGTR	1 cut(s)	815
PshAI	GACNNNNGTC	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	425
PspFI	CCCAGC	1 cut(s)	830
PspGI	CCWGG	1 cut(s)	425
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	3 cut(s)	106, 223, 277
PstI	CTGCAG	1 cut(s)	235
PstNI	CAGNNNCTG	1 cut(s)	118
PsuI	RGATCY	2 cut(s)	235, 580
PvuII	CAGCTG	2 cut(s)	34, 719
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
SaqAI	TTAA	2 cut(s)	152, 576
SatI	GCNGC	4 cut(s)	32, 189, 318, 851
Sau3AI	GATC	5 cut(s)	120, 235, 441, 460, 580
Sau96I	GGNCC	3 cut(s)	106, 223, 277
SchI	GAGTC	2 cut(s)	152, 321
ScrFI	CCNGG	2 cut(s)	427, 671
SetI	ASST	9 cut(s)	36, 73, 219, 279, 368, 479, 721, 817, 852
SfaNI	GCATC	3 cut(s)	33, 55, 379
SfcI	CTRYAG	3 cut(s)	55, 231, 745
SinI	GGWCC	1 cut(s)	277
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
SnaBI	TACGTA	1 cut(s)	815
Sse9I	AATT	3 cut(s)	124, 345, 445
SsiI	CCGC	3 cut(s)	398, 514, 529
SspI	AATATT	1 cut(s)	593
SspMI	CTAG	3 cut(s)	474, 557, 647
StyD4I	CCNGG	2 cut(s)	425, 669
StyI	CCWWGG	1 cut(s)	280
TaiI	ACGT	1 cut(s)	817
TaqI	TCGA	3 cut(s)	141, 196, 621
TasI	AATT	3 cut(s)	124, 345, 445
TfiI	GAWTC	2 cut(s)	404, 803
Tru1I	TTAA	2 cut(s)	152, 576
Tru9I	TTAA	2 cut(s)	152, 576
TseI	GCWGC	4 cut(s)	31, 188, 317, 850
TspDTI	ATGAA	4 cut(s)	104, 562, 567, 779
TspGWI	ACGGA	1 cut(s)	362
Van91I	CCANNNNNTGG	1 cut(s)	497
VpaK11BI	GGWCC	1 cut(s)	277
XceI	RCATGY	3 cut(s)	79, 101, 529
XmiI	GTMKAC	1 cut(s)	146
XspI	CTAG	3 cut(s)	474, 557, 647
Zsp2I	ATGCAT	2 cut(s)	48, 103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.