Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010722

Physical Location & Seq

Genomic Coordinates Forward (+)

5289976 .. 5292006

Gene Structure 2031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0060800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1506 bp

ATGCCTTTGGAACTTGCAGCAGGATCCGGTGATGTAGCAGTTGATGCAGCTTCAGAGAATGCGAAGCAGCAGCCTGCACTGCCTTTGGAACTCATTGCTCTAGTCACTGTCAAAAGGAAACGTGAAAATAAGTTAAATACTATGAAAGACATGATGCTTAGGCTGCTTGGCAATTATGCTTCACCTAATGGCCTACAGCTTGTTAGTACACAAATCCACACAAAGGAAATGAAGCCAAAGCCGAGTGAGGAAGCAATATTACATTGGACAGAGAATTTGAAAATGGGTGCTGGGAAGTGCATTACTTACCAAGTTAAATCTGGGGTGGATTCAAACTTTGGGACGCCAGGAGCCATCACAGTCAGCAACAGATACAACAGCGAGTTTTATTTAGATAGTATCAACATTGAAGGTGTTGTTCATTTTGCCTGCAACTCCTGGGTTCAATCAGCTGGGCATGCTAACCCTGCAAAAAGAATCTTCTTTCCTACCAAGGCATACTTACCTAGTGAGACACCAGCAGGGATTAAAGAGCTAAGAGAAATGGAGCTAATTCAACTAAGGGGTGATGGGACAGGACTTCGAAAGCCATCTGATAGAATATACGACTACAATACTCACAGCGACATTGGAAATCCAGACAAGGGAATTGAATACATTAGACCCATTCTTGGAGGCAGCAATCACCCATACCCTAGACGCTGTCGAACTGGAGGTCCTCCAACCAAGACAGATGAGAAACTGGAGTCACCAGTAAATGAATTCCCGACACTTTATGTGCCTAGAGATGAAGAGTTTGAGGAGTCCAAGAGAGAAGCTGTTGATCTTGGAAGGTTAAAGGCAATTATGAGGCACATTATTCCTGCACTAACAAAAGTTGCCAGGGATAGTGATGAATTCAAGGCATATTCAGACATAACTGGTCTGTATAGAGACGGCATGCCTTCAATAACAAAGAATATGAGGAATCTTCCCTTGCCAAATATTTTGAACAAAGTCCAGGAATACCTAAAATTTGACCCAACAAAATTAAACTCGAGGTTTACAGCTTGTGGTTTGCCAGACGACGAATTTGGACGTCAAGCAATTGCAGGCATAAATCCTCTAAGCATAGAGAGGCTGACAACTTTCCCACCTGTAAGCAAACTGAATGCCTCCACTTATGGCCCACAAGAATCGGCACTCAAGGAAGAACATATACAAGGCCATCTAAATGGCATGTCTGTGCAACAGGCATTGGAAGAAAACAAGCTGTTCATACTAGACTATCATGACATTTTCCTTCCGTTTATCAACCAAATAAATGCTATGGATGACCGAAAAGCTTATACAACACGTACAATTTTCTTCCTCACCTCATTGGGAACATTGAAGCCCATTGCTATTGAGCTCAGTCTCCATCAAACCAATTCAGATACACCATCCAAGCAGGTTCTCACTCCTCCAGTTGATGCTACAACAAATTGGCTTTTGGGAACTTGGCAAAGCCCATGTATGCTCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc

Protein Analysis

501

Amino Acids

55.94

Weight (kDa)

6.62

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAT	PF01477	83 - 162	8.8e-06	PLAT/LH2 domain
Lipoxygenase	PF00305	175 - 490	1.2e-105	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08720
fragaria_vesca	FvH4_3g12600 FvH4_3g12600 FvH4_3g12600 FvH4_3g12600
malus_domestica	MD05G1249400.v1.1
prunus_persica	Prupe.4G114800_v2.0.a1 Prupe.4G114800_v2.0.a1
pyrus_communis	pycom05g22650
rosa_chinensis	RchiOBHm_Chr5g0020561
rosa_multiflora	Rmu_sc0018120.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057730
rosa_rugosa	Rorug05G0060700 Rorug05G0060800 Rorug05G0060900
rosa_samantha	Rh5AG151200 Rh5BG150600 Rh5CG162100 Rh5DG150000
rosa_wichuraiana	Rw5G013380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1081
Acc36I	ACCTGC	1 cut(s)	1420
AclWI	GGATC	2 cut(s)	18, 31
AcsI	RAATTY	5 cut(s)	274, 761, 896, 1013, 1070
AcuI	CTGAAG	1 cut(s)	36
AcyI	GRCGYC	2 cut(s)	344, 1078
AfaI	GTAC	2 cut(s)	208, 1339
AfiI	CCNNNNNNNGG	3 cut(s)	223, 644, 671
AflIII	ACRYGT	1 cut(s)	1334
AjnI	CCWGG	4 cut(s)	346, 437, 881, 999
AloI	GAACNNNNNNTCC	2 cut(s)	700, 732
Alw21I	GWGCWC	1 cut(s)	1392
Alw26I	GTCTC	3 cut(s)	506, 927, 1400
AlwI	GGATC	2 cut(s)	18, 31
Ama87I	CYCGRG	1 cut(s)	1036
AoxI	GGCC	3 cut(s)	190, 1165, 1204
ApeKI	GCWGC	6 cut(s)	17, 47, 67, 70, 163, 678
ApoI	RAATTY	5 cut(s)	274, 761, 896, 1013, 1070
ArsI	GACNNNNNNTTYG	6 cut(s)	259, 291, 700, 732, 1055, 1087
AspS9I	GGNCC	2 cut(s)	716, 1166
AsuHPI	GGTGA	6 cut(s)	41, 174, 578, 677, 741, 1345
AsuII	TTCGAA	1 cut(s)	583
AvaI	CYCGRG	1 cut(s)	1036
AvaII	GGWCC	1 cut(s)	716
BamHI	GGATCC	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	1392
BarI	GAAGNNNNNNTAC	4 cut(s)	243, 275, 1182, 1214
Bbv12I	GWGCWC	1 cut(s)	1392
BbvI	GCAGC	6 cut(s)	29, 59, 79, 82, 150, 690
BccI	CCATC	6 cut(s)	362, 563, 598, 1215, 1407, 1429
BceAI	ACGGC	1 cut(s)	952
BciT130I	CCWGG	4 cut(s)	348, 439, 883, 1001
BcoDI	GTCTC	3 cut(s)	506, 927, 1400
BfaI	CTAG	5 cut(s)	101, 507, 696, 783, 1262
BfmI	CTRYAG	1 cut(s)	194
BfuAI	ACCTGC	1 cut(s)	1420
BisI	GCNGC	6 cut(s)	18, 48, 68, 71, 164, 679
BlsI	GCNGC	6 cut(s)	19, 49, 69, 72, 165, 680
Bme1390I	CCNGG	4 cut(s)	348, 439, 883, 1001
Bme18I	GGWCC	1 cut(s)	716
BmeT110I	CYCGRG	1 cut(s)	1036
BmgT120I	GGNCC	2 cut(s)	716, 1166
BmiI	GGNNCC	2 cut(s)	25, 352
BmrFI	CCNGG	4 cut(s)	348, 439, 883, 1001
BmsI	GCATC	3 cut(s)	34, 144, 1441
BpmI	CTGGAG	3 cut(s)	732, 764, 1428
Bpu10I	CCTNAGC	1 cut(s)	158
Bpu14I	TTCGAA	1 cut(s)	583
BpuEI	CTTGAG	1 cut(s)	1169
BsaAI	YACGTR	1 cut(s)	1337
BsaHI	GRCGYC	2 cut(s)	344, 1078
BsaJI	CCNNGG	3 cut(s)	438, 492, 882
BsaWI	WCCGGW	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 644, 671
Bse1I	ACTGG	5 cut(s)	715, 747, 752, 925, 1445
Bse3DI	GCAATG	2 cut(s)	93, 1377
BseBI	CCWGG	4 cut(s)	348, 439, 883, 1001
BseDI	CCNNGG	3 cut(s)	438, 492, 882
BseGI	GGATG	2 cut(s)	1318, 1421
BseLI	CCNNNNNNNGG	3 cut(s)	223, 644, 671
BseMI	GCAATG	2 cut(s)	93, 1377
BseMII	CTCAG	1 cut(s)	1405
BseNI	ACTGG	5 cut(s)	715, 747, 752, 925, 1445
BseRI	GAGGAG	2 cut(s)	815, 1431
BseXI	GCAGC	6 cut(s)	29, 59, 79, 82, 150, 690
BseYI	CCCAGC	2 cut(s)	290, 452
BsgI	GTGCAG	2 cut(s)	60, 849
BshFI	GGCC	3 cut(s)	192, 1167, 1206
BsiHKAI	GWGCWC	1 cut(s)	1392
BsiHKCI	CYCGRG	1 cut(s)	1036
BsiSI	CCGG	1 cut(s)	27
BslFI	GGGAC	2 cut(s)	355, 586
BslI	CCNNNNNNNGG	3 cut(s)	223, 644, 671
BsmAI	GTCTC	3 cut(s)	506, 927, 1400
BsmBI	CGTCTC	1 cut(s)	927
BsmFI	GGGAC	2 cut(s)	355, 586
BsmI	GAATGC	2 cut(s)	64, 1156
BsnI	GGCC	3 cut(s)	192, 1167, 1206
BsoBI	CYCGRG	1 cut(s)	1036
Bsp119I	TTCGAA	1 cut(s)	583
Bsp1286I	GDGCHC	1 cut(s)	1392
Bsp143I	GATC	2 cut(s)	23, 823
BspANI	GGCC	3 cut(s)	192, 1167, 1206
BspCNI	CTCAG	1 cut(s)	1404
BspHI	TCATGA	1 cut(s)	1270
BspLI	GGNNCC	2 cut(s)	25, 352
BspMI	ACCTGC	1 cut(s)	1420
BspPI	GGATC	2 cut(s)	18, 31
BspT104I	TTCGAA	1 cut(s)	583
BsrDI	GCAATG	2 cut(s)	93, 1377
BsrI	ACTGG	5 cut(s)	715, 747, 752, 925, 1445
BssECI	CCNNGG	3 cut(s)	438, 492, 882
BssMI	GATC	2 cut(s)	23, 823
BssNI	GRCGYC	2 cut(s)	344, 1078
BssT1I	CCWWGG	1 cut(s)	492
Bst2UI	CCWGG	4 cut(s)	348, 439, 883, 1001
Bst4CI	ACNGT	2 cut(s)	109, 361
Bst6I	CTCTTC	1 cut(s)	786
BstACI	GRCGYC	2 cut(s)	344, 1078
BstAPI	GCANNNNNTGC	1 cut(s)	44
BstBAI	YACGTR	1 cut(s)	1337
BstBI	TTCGAA	1 cut(s)	583
BstC8I	GCNNGC	5 cut(s)	75, 430, 459, 941, 1093
BstDEI	CTNAG	5 cut(s)	158, 536, 560, 1106, 1391
BstF5I	GGATG	2 cut(s)	1318, 1421
BstKTI	GATC	2 cut(s)	26, 826
BstMAI	GTCTC	3 cut(s)	506, 927, 1400
BstMBI	GATC	2 cut(s)	23, 823
BstMWI	GCNNNNNNNGC	5 cut(s)	44, 79, 163, 458, 467
BstNI	CCWGG	4 cut(s)	348, 439, 883, 1001
BstNSI	RCATGY	3 cut(s)	461, 943, 1222
BstSCI	CCNGG	4 cut(s)	346, 437, 881, 999
BstSFI	CTRYAG	1 cut(s)	194
BstV1I	GCAGC	6 cut(s)	29, 59, 79, 82, 150, 690
BstX2I	RGATCY	1 cut(s)	23
BstXI	CCANNNNNNTGG	1 cut(s)	1214
BstYI	RGATCY	1 cut(s)	23
BsuRI	GGCC	3 cut(s)	192, 1167, 1206
BtsCI	GGATG	2 cut(s)	1318, 1421
BtsI	GCAGTG	1 cut(s)	77
BtsIMutI	CAGTG	2 cut(s)	77, 105
BveI	ACCTGC	1 cut(s)	1420
Cac8I	GCNNGC	5 cut(s)	75, 430, 459, 941, 1093
CciI	TCATGA	1 cut(s)	1270
Cfr13I	GGNCC	2 cut(s)	716, 1166
CseI	GACGC	2 cut(s)	352, 708
Csp6I	GTAC	2 cut(s)	207, 1338
CviAII	CATG	6 cut(s)	151, 458, 940, 1219, 1271, 1491
CviQI	GTAC	2 cut(s)	207, 1338
DdeI	CTNAG	5 cut(s)	158, 536, 560, 1106, 1391
DpnI	GATC	2 cut(s)	25, 825
DpnII	GATC	2 cut(s)	23, 823
Eam1104I	CTCTTC	1 cut(s)	786
EarI	CTCTTC	1 cut(s)	786
Ecl136II	GAGCTC	1 cut(s)	1390
Eco130I	CCWWGG	1 cut(s)	492
Eco24I	GRGCYC	1 cut(s)	1392
Eco47I	GGWCC	1 cut(s)	716
Eco53kI	GAGCTC	1 cut(s)	1390
Eco57I	CTGAAG	1 cut(s)	36
Eco88I	CYCGRG	1 cut(s)	1036
EcoICRI	GAGCTC	1 cut(s)	1390
EcoO109I	RGGNCCY	1 cut(s)	716
EcoRI	GAATTC	2 cut(s)	761, 896
EcoRII	CCWGG	4 cut(s)	346, 437, 881, 999
EcoT14I	CCWWGG	1 cut(s)	492
EcoT38I	GRGCYC	1 cut(s)	1392
ErhI	CCWWGG	1 cut(s)	492
Esp3I	CGTCTC	1 cut(s)	927
FaeI	CATG	6 cut(s)	154, 461, 943, 1222, 1274, 1494
FalI	AAGNNNNNCTT	2 cut(s)	485, 517
FaqI	GGGAC	2 cut(s)	355, 586
FatI	CATG	6 cut(s)	150, 457, 939, 1218, 1270, 1490
Fnu4HI	GCNGC	6 cut(s)	18, 48, 68, 71, 164, 679
FokI	GGATG	2 cut(s)	1325, 1408
FriOI	GRGCYC	1 cut(s)	1392
Fsp4HI	GCNGC	6 cut(s)	18, 48, 68, 71, 164, 679
FspBI	CTAG	5 cut(s)	101, 507, 696, 783, 1262
GluI	GCNGC	6 cut(s)	18, 48, 68, 71, 164, 679
GsaI	CCCAGC	2 cut(s)	294, 456
GsuI	CTGGAG	3 cut(s)	732, 764, 1428
HaeIII	GGCC	3 cut(s)	192, 1167, 1206
HapII	CCGG	1 cut(s)	27
HgaI	GACGC	2 cut(s)	352, 708
Hin1I	GRCGYC	2 cut(s)	344, 1078
Hin1II	CATG	6 cut(s)	154, 461, 943, 1222, 1274, 1494
HindIII	AAGCTT	1 cut(s)	1323
HinfI	GANTC	6 cut(s)	329, 477, 746, 803, 967, 1175
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	6 cut(s)	41, 174, 578, 677, 741, 1345
Hpy166II	GTNNAC	2 cut(s)	209, 1044
Hpy188I	TCNGA	4 cut(s)	55, 595, 913, 1414
Hpy188III	TCNNGA	3 cut(s)	638, 766, 1271
Hpy8I	GTNNAC	2 cut(s)	209, 1044
Hpy99I	CGWCG	1 cut(s)	1070
HpyAV	CCTTC	4 cut(s)	404, 825, 954, 1292
HpyCH4III	ACNGT	2 cut(s)	109, 361
HpyCH4IV	ACGT	3 cut(s)	121, 1078, 1336
HpyCH4V	TGCA	9 cut(s)	17, 47, 77, 300, 432, 470, 866, 1091, 1228
HpyF10VI	GCNNNNNNNGC	5 cut(s)	44, 79, 163, 458, 467
HpyF3I	CTNAG	5 cut(s)	158, 536, 560, 1106, 1391
HpySE526I	ACGT	3 cut(s)	121, 1078, 1336
Hsp92I	GRCGYC	2 cut(s)	344, 1078
Hsp92II	CATG	6 cut(s)	154, 461, 943, 1222, 1274, 1494
Kzo9I	GATC	2 cut(s)	23, 823
LmnI	GCTCC	3 cut(s)	350, 547, 1503
Lsp1109I	GCAGC	6 cut(s)	29, 59, 79, 82, 150, 690
LweI	GCATC	3 cut(s)	34, 144, 1441
MaeI	CTAG	5 cut(s)	101, 507, 696, 783, 1262
MaeII	ACGT	3 cut(s)	121, 1078, 1336
MaeIII	GTNAC	2 cut(s)	103, 747
MalI	GATC	2 cut(s)	25, 825
MboI	GATC	2 cut(s)	23, 823
MboII	GAAGA	6 cut(s)	472, 803, 962, 1202, 1253, 1339
MfeI	CAATTG	1 cut(s)	1086
MflI	RGATCY	1 cut(s)	23
MhlI	GDGCHC	1 cut(s)	1392
MlyI	GAGTC	2 cut(s)	755, 812
MmeI	TCCRAC	1 cut(s)	746
MseI	TTAA	5 cut(s)	134, 315, 528, 836, 1031
MslI	CAYNNNNRTG	2 cut(s)	1212, 1223
MspA1I	CMGCKG	1 cut(s)	452
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	4 cut(s)	348, 439, 883, 1001
MunI	CAATTG	1 cut(s)	1086
Mva1269I	GAATGC	2 cut(s)	64, 1156
MvaI	CCWGG	4 cut(s)	348, 439, 883, 1001
MwoI	GCNNNNNNNGC	5 cut(s)	44, 79, 163, 458, 467
NdeII	GATC	2 cut(s)	23, 823
NlaIII	CATG	6 cut(s)	154, 461, 943, 1222, 1274, 1494
NlaIV	GGNNCC	2 cut(s)	25, 352
NmeAIII	GCCGAG	1 cut(s)	267
NmuCI	GTSAC	2 cut(s)	103, 747
NspI	RCATGY	3 cut(s)	461, 943, 1222
NspV	TTCGAA	1 cut(s)	583
PaeI	GCATGC	2 cut(s)	461, 943
PaeR7I	CTCGAG	1 cut(s)	1036
PagI	TCATGA	1 cut(s)	1270
PctI	GAATGC	2 cut(s)	64, 1156
PfeI	GAWTC	4 cut(s)	329, 477, 967, 1175
PflFI	GACNNNGTC	1 cut(s)	702
PfoI	TCCNGGA	1 cut(s)	999
PkrI	GCNGC	6 cut(s)	19, 49, 69, 72, 165, 680
PleI	GAGTC	2 cut(s)	754, 811
PpsI	GAGTC	2 cut(s)	754, 811
Ppu21I	YACGTR	1 cut(s)	1337
PpuMI	RGGWCCY	1 cut(s)	716
Psp124BI	GAGCTC	1 cut(s)	1392
Psp5II	RGGWCCY	1 cut(s)	716
Psp6I	CCWGG	4 cut(s)	346, 437, 881, 999
PspFI	CCCAGC	2 cut(s)	290, 452
PspGI	CCWGG	4 cut(s)	346, 437, 881, 999
PspN4I	GGNNCC	2 cut(s)	25, 352
PspPI	GGNCC	2 cut(s)	716, 1166
PspPPI	RGGWCCY	1 cut(s)	716
PspXI	VCTCGAGB	1 cut(s)	1036
PsuI	RGATCY	1 cut(s)	23
PsyI	GACNNNGTC	1 cut(s)	702
PvuII	CAGCTG	1 cut(s)	452
RsaI	GTAC	2 cut(s)	208, 1339
RsaNI	GTAC	2 cut(s)	207, 1338
RseI	CAYNNNNRTG	2 cut(s)	1212, 1223
SacI	GAGCTC	1 cut(s)	1392
SaqAI	TTAA	5 cut(s)	134, 315, 528, 836, 1031
SatI	GCNGC	6 cut(s)	18, 48, 68, 71, 164, 679
Sau3AI	GATC	2 cut(s)	23, 823
Sau96I	GGNCC	2 cut(s)	716, 1166
SchI	GAGTC	2 cut(s)	755, 812
ScrFI	CCNGG	4 cut(s)	348, 439, 883, 1001
SduI	GDGCHC	1 cut(s)	1392
SfaNI	GCATC	3 cut(s)	34, 144, 1441
SfcI	CTRYAG	1 cut(s)	194
Sfr274I	CTCGAG	1 cut(s)	1036
SfuI	TTCGAA	1 cut(s)	583
SinI	GGWCC	1 cut(s)	716
SlaI	CTCGAG	1 cut(s)	1036
SmiMI	CAYNNNNRTG	2 cut(s)	1212, 1223
SmlI	CTYRAG	2 cut(s)	1036, 1184
SmoI	CTYRAG	2 cut(s)	1036, 1184
SphI	GCATGC	2 cut(s)	461, 943
SspI	AATATT	2 cut(s)	258, 985
SspMI	CTAG	5 cut(s)	101, 507, 696, 783, 1262
SstI	GAGCTC	1 cut(s)	1392
StyD4I	CCNGG	4 cut(s)	346, 437, 881, 999
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	2 cut(s)	109, 361
TaiI	ACGT	3 cut(s)	124, 1081, 1339
TaqI	TCGA	3 cut(s)	583, 706, 1037
TaqII	GACCGA	1 cut(s)	1332
TatI	WGTACW	1 cut(s)	206
TfiI	GAWTC	4 cut(s)	329, 477, 967, 1175
Tru1I	TTAA	5 cut(s)	134, 315, 528, 836, 1031
Tru9I	TTAA	5 cut(s)	134, 315, 528, 836, 1031
TscAI	CASTG	2 cut(s)	84, 112
TseFI	GTSAC	2 cut(s)	103, 747
TseI	GCWGC	6 cut(s)	17, 47, 67, 70, 163, 678
Tsp45I	GTSAC	2 cut(s)	103, 747
TspDTI	ATGAA	7 cut(s)	158, 245, 410, 774, 804, 909, 1246
TspGWI	ACGGA	1 cut(s)	1275
TspRI	CASTG	2 cut(s)	84, 112
Tth111I	GACNNNGTC	1 cut(s)	702
VpaK11BI	GGWCC	1 cut(s)	716
XapI	RAATTY	5 cut(s)	274, 761, 896, 1013, 1070
XceI	RCATGY	3 cut(s)	461, 943, 1222
XcmI	CCANNNNNNNNNTGG	1 cut(s)	317
XhoI	CTCGAG	1 cut(s)	1036
XspI	CTAG	5 cut(s)	101, 507, 696, 783, 1262
ZraI	GACGTC	1 cut(s)	1079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.