Polyketide cyclase / dehydrase and lipid transport
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G08720 |
| fragaria_vesca | FvH4_3g12600 FvH4_3g12600 FvH4_3g12600 FvH4_3g12600 |
| malus_domestica | MD05G1249400.v1.1 |
| prunus_persica | Prupe.4G114800_v2.0.a1 Prupe.4G114800_v2.0.a1 |
| pyrus_communis | pycom05g22650 |
| rosa_chinensis | RchiOBHm_Chr5g0020561 |
| rosa_multiflora | Rmu_sc0018120.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00057730 |
| rosa_rugosa | Rorug05G0060700 Rorug05G0060800 Rorug05G0060900 |
| rosa_samantha | Rh5AG151200 Rh5BG150600 Rh5CG162100 Rh5DG150000 |
| rosa_wichuraiana | Rw5G013380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1803 |
| AatII | GACGTC | 1 cut(s) | 306 |
| Acc16I | TGCGCA | 1 cut(s) | 1358 |
| Acc36I | ACCTGC | 1 cut(s) | 1919 |
| AccB1I | GGYRCC | 1 cut(s) | 170 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 398 |
| AccI | GTMKAC | 1 cut(s) | 105 |
| AciI | CCGC | 3 cut(s) | 117, 262, 576 |
| AcoI | YGGCCR | 1 cut(s) | 1946 |
| AcsI | RAATTY | 6 cut(s) | 856, 1111, 1158, 1420, 1658, 1843 |
| AcuI | CTGAAG | 3 cut(s) | 461, 1148, 1398 |
| AcvI | CACGTG | 1 cut(s) | 1208 |
| AcyI | GRCGYC | 2 cut(s) | 171, 303 |
| AfaI | GTAC | 4 cut(s) | 1197, 1337, 1429, 1525 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 66, 67, 277, 378, 398, 1114 |
| AflIII | ACRYGT | 1 cut(s) | 1207 |
| AhlI | ACTAGT | 1 cut(s) | 785 |
| AjiI | CACGTC | 1 cut(s) | 94 |
| AjnI | CCWGG | 3 cut(s) | 397, 862, 1612 |
| Alw21I | GWGCWC | 3 cut(s) | 43, 439, 1653 |
| Alw26I | GTCTC | 1 cut(s) | 1431 |
| Ama87I | CYCGRG | 2 cut(s) | 459, 1097 |
| AoxI | GGCC | 7 cut(s) | 69, 279, 693, 865, 950, 1601, 1946 |
| ApaI | GGGCCC | 1 cut(s) | 73 |
| ApeKI | GCWGC | 1 cut(s) | 1306 |
| ApoI | RAATTY | 6 cut(s) | 856, 1111, 1158, 1420, 1658, 1843 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1092, 1916 |
| AspLEI | GCGC | 3 cut(s) | 173, 270, 1359 |
| AspS9I | GGNCC | 8 cut(s) | 69, 70, 125, 472, 693, 866, 1609, 1888 |
| AsuHPI | GGTGA | 1 cut(s) | 244 |
| AsuNHI | GCTAGC | 1 cut(s) | 1031 |
| AvaI | CYCGRG | 2 cut(s) | 459, 1097 |
| AvaII | GGWCC | 4 cut(s) | 125, 472, 1609, 1888 |
| BaeGI | GKGCMC | 1 cut(s) | 73 |
| BalI | TGGCCA | 1 cut(s) | 1948 |
| BanI | GGYRCC | 1 cut(s) | 170 |
| BanII | GRGCYC | 3 cut(s) | 43, 73, 1653 |
| BbrPI | CACGTG | 1 cut(s) | 1208 |
| BbsI | GAAGAC | 1 cut(s) | 1085 |
| Bbv12I | GWGCWC | 3 cut(s) | 43, 439, 1653 |
| BbvI | GCAGC | 1 cut(s) | 1318 |
| BccI | CCATC | 6 cut(s) | 126, 527, 803, 983, 1023, 1535 |
| BceAI | ACGGC | 3 cut(s) | 158, 172, 184 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 326, 360, 1452, 1486 |
| BciT130I | CCWGG | 3 cut(s) | 399, 864, 1614 |
| BciVI | GTATCC | 1 cut(s) | 1357 |
| BclI | TGATCA | 2 cut(s) | 3, 1558 |
| BcoDI | GTCTC | 1 cut(s) | 1431 |
| BcuI | ACTAGT | 1 cut(s) | 785 |
| BfaI | CTAG | 6 cut(s) | 765, 786, 1032, 1217, 1310, 1593 |
| BfmI | CTRYAG | 1 cut(s) | 937 |
| BfoI | RGCGCY | 2 cut(s) | 174, 271 |
| BfuAI | ACCTGC | 1 cut(s) | 1919 |
| BfuI | GTATCC | 1 cut(s) | 1357 |
| BglII | AGATCT | 2 cut(s) | 673, 1408 |
| BisI | GCNGC | 1 cut(s) | 1307 |
| BlpI | GCTNAGC | 1 cut(s) | 1647 |
| BlsI | GCNGC | 1 cut(s) | 1308 |
| Bme1390I | CCNGG | 3 cut(s) | 399, 864, 1614 |
| Bme18I | GGWCC | 4 cut(s) | 125, 472, 1609, 1888 |
| BmeT110I | CYCGRG | 2 cut(s) | 459, 1097 |
| BmgBI | CACGTC | 1 cut(s) | 94 |
| BmgT120I | GGNCC | 8 cut(s) | 69, 70, 125, 472, 693, 866, 1609, 1888 |
| BmiI | GGNNCC | 7 cut(s) | 71, 127, 137, 172, 1610, 1611, 1890 |
| BmrFI | CCNGG | 3 cut(s) | 399, 864, 1614 |
| BmrI | ACTGGG | 1 cut(s) | 1837 |
| BmsI | GCATC | 2 cut(s) | 1567, 1816 |
| BmtI | GCTAGC | 1 cut(s) | 1035 |
| BmuI | ACTGGG | 1 cut(s) | 1837 |
| BpiI | GAAGAC | 1 cut(s) | 1085 |
| BpmI | CTGGAG | 1 cut(s) | 434 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1647 |
| BpuEI | CTTGAG | 2 cut(s) | 1322, 1859 |
| BsaAI | YACGTR | 1 cut(s) | 1208 |
| BsaHI | GRCGYC | 2 cut(s) | 171, 303 |
| BsaJI | CCNNGG | 6 cut(s) | 34, 398, 525, 696, 1604, 1612 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 98, 128 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 66, 67, 277, 378, 398, 1114 |
| Bse1I | ACTGG | 4 cut(s) | 139, 372, 1521, 1832 |
| BseBI | CCWGG | 3 cut(s) | 399, 864, 1614 |
| BseDI | CCNNGG | 6 cut(s) | 34, 398, 525, 696, 1604, 1612 |
| BseGI | GGATG | 5 cut(s) | 354, 814, 970, 1178, 1517 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 66, 67, 277, 378, 398, 1114 |
| BseMII | CTCAG | 3 cut(s) | 891, 1595, 1638 |
| BseNI | ACTGG | 4 cut(s) | 139, 372, 1521, 1832 |
| BseRI | GAGGAG | 2 cut(s) | 234, 1888 |
| BseSI | GKGCMC | 1 cut(s) | 73 |
| BseXI | GCAGC | 1 cut(s) | 1318 |
| BseYI | CCCAGC | 3 cut(s) | 889, 1878, 1904 |
| BsgI | GTGCAG | 1 cut(s) | 1947 |
| BshFI | GGCC | 7 cut(s) | 71, 281, 695, 867, 952, 1603, 1948 |
| BshNI | GGYRCC | 1 cut(s) | 170 |
| BsiHKAI | GWGCWC | 3 cut(s) | 43, 439, 1653 |
| BsiHKCI | CYCGRG | 2 cut(s) | 459, 1097 |
| BslFI | GGGAC | 5 cut(s) | 551, 592, 1091, 1283, 1595 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 66, 67, 277, 378, 398, 1114 |
| BsmAI | GTCTC | 1 cut(s) | 1431 |
| BsmFI | GGGAC | 5 cut(s) | 551, 592, 1091, 1283, 1595 |
| BsnI | GGCC | 7 cut(s) | 71, 281, 695, 867, 952, 1603, 1948 |
| BsoBI | CYCGRG | 2 cut(s) | 459, 1097 |
| Bsp120I | GGGCCC | 1 cut(s) | 69 |
| Bsp1286I | GDGCHC | 4 cut(s) | 43, 73, 439, 1653 |
| Bsp1407I | TGTACA | 1 cut(s) | 1427 |
| Bsp143I | GATC | 6 cut(s) | 3, 505, 668, 673, 1408, 1558 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1647 |
| Bsp19I | CCATGG | 1 cut(s) | 525 |
| BspACI | CCGC | 3 cut(s) | 117, 262, 576 |
| BspANI | GGCC | 7 cut(s) | 71, 281, 695, 867, 952, 1603, 1948 |
| BspCNI | CTCAG | 3 cut(s) | 892, 1594, 1639 |
| BspLI | GGNNCC | 7 cut(s) | 71, 127, 137, 172, 1610, 1611, 1890 |
| BspMAI | CTGCAG | 1 cut(s) | 941 |
| BspMI | ACCTGC | 1 cut(s) | 1919 |
| BspOI | GCTAGC | 1 cut(s) | 1035 |
| BspT107I | GGYRCC | 1 cut(s) | 170 |
| BsrGI | TGTACA | 1 cut(s) | 1427 |
| BsrI | ACTGG | 4 cut(s) | 139, 372, 1521, 1832 |
| BssECI | CCNNGG | 6 cut(s) | 34, 398, 525, 696, 1604, 1612 |
| BssMI | GATC | 6 cut(s) | 3, 505, 668, 673, 1408, 1558 |
| BssNI | GRCGYC | 2 cut(s) | 171, 303 |
| BssT1I | CCWWGG | 3 cut(s) | 525, 696, 1604 |
| Bst2UI | CCWGG | 3 cut(s) | 399, 864, 1614 |
| Bst4CI | ACNGT | 4 cut(s) | 441, 1042, 1342, 1555 |
| Bst6I | CTCTTC | 4 cut(s) | 195, 1386, 1717, 1848 |
| BstACI | GRCGYC | 2 cut(s) | 171, 303 |
| BstAUI | TGTACA | 1 cut(s) | 1427 |
| BstBAI | YACGTR | 1 cut(s) | 1208 |
| BstC8I | GCNNGC | 3 cut(s) | 428, 1033, 1926 |
| BstDEI | CTNAG | 3 cut(s) | 900, 1581, 1647 |
| BstDSI | CCRYGG | 2 cut(s) | 34, 525 |
| BstF5I | GGATG | 5 cut(s) | 354, 814, 970, 1178, 1517 |
| BstH2I | RGCGCY | 2 cut(s) | 174, 271 |
| BstHHI | GCGC | 3 cut(s) | 173, 270, 1359 |
| BstKTI | GATC | 6 cut(s) | 6, 508, 671, 676, 1411, 1561 |
| BstMAI | GTCTC | 1 cut(s) | 1431 |
| BstMBI | GATC | 6 cut(s) | 3, 505, 668, 673, 1408, 1558 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 38, 203, 409 |
| BstNI | CCWGG | 3 cut(s) | 399, 864, 1614 |
| BstNSI | RCATGY | 2 cut(s) | 1482, 1903 |
| BstSCI | CCNGG | 3 cut(s) | 397, 862, 1612 |
| BstSFI | CTRYAG | 1 cut(s) | 937 |
| BstSLI | GKGCMC | 1 cut(s) | 73 |
| BstV1I | GCAGC | 1 cut(s) | 1318 |
| BstV2I | GAAGAC | 1 cut(s) | 1085 |
| BstX2I | RGATCY | 2 cut(s) | 673, 1408 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 652 |
| BstYI | RGATCY | 2 cut(s) | 673, 1408 |
| BsuI | GTATCC | 1 cut(s) | 1357 |
| BsuRI | GGCC | 7 cut(s) | 71, 281, 695, 867, 952, 1603, 1948 |
| BtgI | CCRYGG | 2 cut(s) | 34, 525 |
| BtrI | CACGTC | 1 cut(s) | 94 |
| BtsCI | GGATG | 5 cut(s) | 354, 814, 970, 1178, 1517 |
| BtsIMutI | CAGTG | 5 cut(s) | 146, 379, 437, 1338, 1778 |
| BveI | ACCTGC | 1 cut(s) | 1919 |
| Cac8I | GCNNGC | 3 cut(s) | 428, 1033, 1926 |
| CfoI | GCGC | 3 cut(s) | 173, 270, 1359 |
| Cfr13I | GGNCC | 8 cut(s) | 69, 70, 125, 472, 693, 866, 1609, 1888 |
| CseI | GACGC | 1 cut(s) | 329 |
| Csp6I | GTAC | 4 cut(s) | 1196, 1336, 1428, 1524 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 478, 513 |
| CviQI | GTAC | 4 cut(s) | 1196, 1336, 1428, 1524 |
| DdeI | CTNAG | 3 cut(s) | 900, 1581, 1647 |
| DinI | GGCGCC | 1 cut(s) | 172 |
| DpnI | GATC | 6 cut(s) | 5, 507, 670, 675, 1410, 1560 |
| DpnII | GATC | 6 cut(s) | 3, 505, 668, 673, 1408, 1558 |
| DraI | TTTAAA | 1 cut(s) | 850 |
| EaeI | YGGCCR | 1 cut(s) | 1946 |
| Eam1104I | CTCTTC | 4 cut(s) | 195, 1386, 1717, 1848 |
| EarI | CTCTTC | 4 cut(s) | 195, 1386, 1717, 1848 |
| EciI | GGCGGA | 1 cut(s) | 106 |
| Ecl136II | GAGCTC | 2 cut(s) | 41, 1651 |
| Eco130I | CCWWGG | 3 cut(s) | 525, 696, 1604 |
| Eco147I | AGGCCT | 1 cut(s) | 952 |
| Eco24I | GRGCYC | 3 cut(s) | 43, 73, 1653 |
| Eco32I | GATATC | 1 cut(s) | 1732 |
| Eco47I | GGWCC | 4 cut(s) | 125, 472, 1609, 1888 |
| Eco53kI | GAGCTC | 2 cut(s) | 41, 1651 |
| Eco57I | CTGAAG | 3 cut(s) | 461, 1148, 1398 |
| Eco72I | CACGTG | 1 cut(s) | 1208 |
| Eco88I | CYCGRG | 2 cut(s) | 459, 1097 |
| EcoICRI | GAGCTC | 2 cut(s) | 41, 1651 |
| EcoO109I | RGGNCCY | 2 cut(s) | 70, 1609 |
| EcoRI | GAATTC | 1 cut(s) | 1158 |
| EcoRII | CCWGG | 3 cut(s) | 397, 862, 1612 |
| EcoRV | GATATC | 1 cut(s) | 1732 |
| EcoT14I | CCWWGG | 3 cut(s) | 525, 696, 1604 |
| EcoT38I | GRGCYC | 3 cut(s) | 43, 73, 1653 |
| EgeI | GGCGCC | 1 cut(s) | 172 |
| EheI | GGCGCC | 1 cut(s) | 172 |
| ErhI | CCWWGG | 3 cut(s) | 525, 696, 1604 |
| FaqI | GGGAC | 5 cut(s) | 551, 592, 1091, 1283, 1595 |
| FauI | CCCGC | 2 cut(s) | 255, 569 |
| FauNDI | CATATG | 1 cut(s) | 607 |
| FbaI | TGATCA | 2 cut(s) | 3, 1558 |
| FblI | GTMKAC | 1 cut(s) | 105 |
| Fnu4HI | GCNGC | 1 cut(s) | 1307 |
| FokI | GGATG | 5 cut(s) | 341, 821, 977, 1185, 1504 |
| FriOI | GRGCYC | 3 cut(s) | 43, 73, 1653 |
| Fsp4HI | GCNGC | 1 cut(s) | 1307 |
| FspBI | CTAG | 6 cut(s) | 765, 786, 1032, 1217, 1310, 1593 |
| FspI | TGCGCA | 1 cut(s) | 1358 |
| GlaI | GCGC | 3 cut(s) | 172, 269, 1358 |
| GluI | GCNGC | 1 cut(s) | 1307 |
| GsaI | CCCAGC | 3 cut(s) | 893, 1882, 1908 |
| GsuI | CTGGAG | 1 cut(s) | 434 |
| HaeII | RGCGCY | 2 cut(s) | 174, 271 |
| HaeIII | GGCC | 7 cut(s) | 71, 281, 695, 867, 952, 1603, 1948 |
| HgaI | GACGC | 1 cut(s) | 329 |
| HhaI | GCGC | 3 cut(s) | 173, 270, 1359 |
| Hin1I | GRCGYC | 2 cut(s) | 171, 303 |
| Hin6I | GCGC | 3 cut(s) | 171, 268, 1357 |
| HinP1I | GCGC | 3 cut(s) | 171, 268, 1357 |
| HindIII | AAGCTT | 2 cut(s) | 15, 1495 |
| HphI | GGTGA | 1 cut(s) | 244 |
| Hpy166II | GTNNAC | 6 cut(s) | 106, 178, 392, 791, 1338, 1715 |
| Hpy8I | GTNNAC | 6 cut(s) | 106, 178, 392, 791, 1338, 1715 |
| Hpy99I | CGWCG | 2 cut(s) | 125, 305 |
| HpyCH4III | ACNGT | 4 cut(s) | 441, 1042, 1342, 1555 |
| HpyCH4IV | ACGT | 3 cut(s) | 93, 303, 1207 |
| HpyCH4V | TGCA | 9 cut(s) | 99, 430, 939, 1205, 1621, 1667, 1775, 1849, 1928 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 38, 203, 409 |
| HpyF3I | CTNAG | 3 cut(s) | 900, 1581, 1647 |
| HpySE526I | ACGT | 3 cut(s) | 93, 303, 1207 |
| Hsp92I | GRCGYC | 2 cut(s) | 171, 303 |
| HspAI | GCGC | 3 cut(s) | 171, 268, 1357 |
| KasI | GGCGCC | 1 cut(s) | 170 |
| KflI | GGGWCCC | 1 cut(s) | 1609 |
| Ksp22I | TGATCA | 2 cut(s) | 3, 1558 |
| Kzo9I | GATC | 6 cut(s) | 3, 505, 668, 673, 1408, 1558 |
| LmnI | GCTCC | 7 cut(s) | 38, 265, 415, 761, 1054, 1656, 1875 |
| Lsp1109I | GCAGC | 1 cut(s) | 1318 |
| LweI | GCATC | 2 cut(s) | 1567, 1816 |
| MaeI | CTAG | 6 cut(s) | 765, 786, 1032, 1217, 1310, 1593 |
| MaeII | ACGT | 3 cut(s) | 93, 303, 1207 |
| MaeIII | GTNAC | 2 cut(s) | 781, 1823 |
| MalI | GATC | 6 cut(s) | 5, 507, 670, 675, 1410, 1560 |
| MboI | GATC | 6 cut(s) | 3, 505, 668, 673, 1408, 1558 |
| MfeI | CAATTG | 1 cut(s) | 1562 |
| MflI | RGATCY | 2 cut(s) | 673, 1408 |
| MhlI | GDGCHC | 4 cut(s) | 43, 73, 439, 1653 |
| MlsI | TGGCCA | 1 cut(s) | 1948 |
| MluNI | TGGCCA | 1 cut(s) | 1948 |
| Mly113I | GGCGCC | 1 cut(s) | 171 |
| MlyI | GAGTC | 2 cut(s) | 282, 1271 |
| MmeI | TCCRAC | 1 cut(s) | 1106 |
| Mox20I | TGGCCA | 1 cut(s) | 1948 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1092, 1916 |
| MscI | TGGCCA | 1 cut(s) | 1948 |
| MseI | TTAA | 2 cut(s) | 840, 849 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1020, 1206, 1536, 1751 |
| Msp20I | TGGCCA | 1 cut(s) | 1948 |
| MspR9I | CCNGG | 3 cut(s) | 399, 864, 1614 |
| MunI | CAATTG | 1 cut(s) | 1562 |
| MvaI | CCWGG | 3 cut(s) | 399, 864, 1614 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 38, 203, 409 |
| NarI | GGCGCC | 1 cut(s) | 171 |
| NcoI | CCATGG | 1 cut(s) | 525 |
| NdeI | CATATG | 1 cut(s) | 607 |
| NdeII | GATC | 6 cut(s) | 3, 505, 668, 673, 1408, 1558 |
| NheI | GCTAGC | 1 cut(s) | 1031 |
| NlaIV | GGNNCC | 7 cut(s) | 71, 127, 137, 172, 1610, 1611, 1890 |
| NmeAIII | GCCGAG | 2 cut(s) | 296, 307 |
| NmuCI | GTSAC | 1 cut(s) | 781 |
| NsbI | TGCGCA | 1 cut(s) | 1358 |
| NspI | RCATGY | 2 cut(s) | 1482, 1903 |
| PaeR7I | CTCGAG | 1 cut(s) | 459 |
| PceI | AGGCCT | 1 cut(s) | 952 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 309 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1092, 1916 |
| PfeI | GAWTC | 8 cut(s) | 382, 630, 984, 1346, 1571, 1761, 1786, 1937 |
| PflFI | GACNNNGTC | 1 cut(s) | 583 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 398 |
| PkrI | GCNGC | 1 cut(s) | 1308 |
| PleI | GAGTC | 2 cut(s) | 281, 1271 |
| PluTI | GGCGCC | 1 cut(s) | 174 |
| PmaCI | CACGTG | 1 cut(s) | 1208 |
| PmlI | CACGTG | 1 cut(s) | 1208 |
| PpsI | GAGTC | 2 cut(s) | 281, 1271 |
| Ppu21I | YACGTR | 1 cut(s) | 1208 |
| PpuMI | RGGWCCY | 1 cut(s) | 1609 |
| PsiI | TTATAA | 1 cut(s) | 1803 |
| Psp124BI | GAGCTC | 2 cut(s) | 43, 1653 |
| Psp5II | RGGWCCY | 1 cut(s) | 1609 |
| Psp6I | CCWGG | 3 cut(s) | 397, 862, 1612 |
| PspCI | CACGTG | 1 cut(s) | 1208 |
| PspFI | CCCAGC | 3 cut(s) | 889, 1878, 1904 |
| PspGI | CCWGG | 3 cut(s) | 397, 862, 1612 |
| PspN4I | GGNNCC | 7 cut(s) | 71, 127, 137, 172, 1610, 1611, 1890 |
| PspOMI | GGGCCC | 1 cut(s) | 69 |
| PspPI | GGNCC | 8 cut(s) | 69, 70, 125, 472, 693, 866, 1609, 1888 |
| PspPPI | RGGWCCY | 1 cut(s) | 1609 |
| PspXI | VCTCGAGB | 1 cut(s) | 459 |
| PstI | CTGCAG | 1 cut(s) | 941 |
| PsuI | RGATCY | 2 cut(s) | 673, 1408 |
| PsyI | GACNNNGTC | 1 cut(s) | 583 |
| RsaI | GTAC | 4 cut(s) | 1197, 1337, 1429, 1525 |
| RsaNI | GTAC | 4 cut(s) | 1196, 1336, 1428, 1524 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1020, 1206, 1536, 1751 |
| SacI | GAGCTC | 2 cut(s) | 43, 1653 |
| SaqAI | TTAA | 2 cut(s) | 840, 849 |
| SatI | GCNGC | 1 cut(s) | 1307 |
| Sau3AI | GATC | 6 cut(s) | 3, 505, 668, 673, 1408, 1558 |
| Sau96I | GGNCC | 8 cut(s) | 69, 70, 125, 472, 693, 866, 1609, 1888 |
| SchI | GAGTC | 2 cut(s) | 282, 1271 |
| ScrFI | CCNGG | 3 cut(s) | 399, 864, 1614 |
| SduI | GDGCHC | 4 cut(s) | 43, 73, 439, 1653 |
| SfaNI | GCATC | 2 cut(s) | 1567, 1816 |
| SfcI | CTRYAG | 1 cut(s) | 937 |
| SfoI | GGCGCC | 1 cut(s) | 172 |
| Sfr274I | CTCGAG | 1 cut(s) | 459 |
| SinI | GGWCC | 4 cut(s) | 125, 472, 1609, 1888 |
| SlaI | CTCGAG | 1 cut(s) | 459 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1020, 1206, 1536, 1751 |
| SmlI | CTYRAG | 3 cut(s) | 459, 1301, 1838 |
| SmoI | CTYRAG | 3 cut(s) | 459, 1301, 1838 |
| SpeI | ACTAGT | 1 cut(s) | 785 |
| SseBI | AGGCCT | 1 cut(s) | 952 |
| SsiI | CCGC | 3 cut(s) | 117, 262, 576 |
| SspDI | GGCGCC | 1 cut(s) | 170 |
| SspMI | CTAG | 6 cut(s) | 765, 786, 1032, 1217, 1310, 1593 |
| SstI | GAGCTC | 2 cut(s) | 43, 1653 |
| StuI | AGGCCT | 1 cut(s) | 952 |
| StyD4I | CCNGG | 3 cut(s) | 397, 862, 1612 |
| StyI | CCWWGG | 3 cut(s) | 525, 696, 1604 |
| TaaI | ACNGT | 4 cut(s) | 441, 1042, 1342, 1555 |
| TaiI | ACGT | 3 cut(s) | 96, 306, 1210 |
| TaqI | TCGA | 9 cut(s) | 460, 987, 1275, 1349, 1472, 1734, 1810, 1864, 1920 |
| TaqII | GACCGA | 1 cut(s) | 280 |
| TatI | WGTACW | 3 cut(s) | 1335, 1427, 1523 |
| TfiI | GAWTC | 8 cut(s) | 382, 630, 984, 1346, 1571, 1761, 1786, 1937 |
| Tru1I | TTAA | 2 cut(s) | 840, 849 |
| Tru9I | TTAA | 2 cut(s) | 840, 849 |
| TscAI | CASTG | 5 cut(s) | 146, 379, 444, 1345, 1785 |
| TseFI | GTSAC | 1 cut(s) | 781 |
| TseI | GCWGC | 1 cut(s) | 1306 |
| Tsp45I | GTSAC | 1 cut(s) | 781 |
| TspGWI | ACGGA | 4 cut(s) | 51, 138, 301, 344 |
| TspRI | CASTG | 5 cut(s) | 146, 379, 444, 1345, 1785 |
| Tth111I | GACNNNGTC | 1 cut(s) | 583 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 398 |
| VpaK11BI | GGWCC | 4 cut(s) | 125, 472, 1609, 1888 |
| XapI | RAATTY | 6 cut(s) | 856, 1111, 1158, 1420, 1658, 1843 |
| XceI | RCATGY | 2 cut(s) | 1482, 1903 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1538, 1824 |
| XhoI | CTCGAG | 1 cut(s) | 459 |
| XmiI | GTMKAC | 1 cut(s) | 105 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1092, 1916 |
| XspI | CTAG | 6 cut(s) | 765, 786, 1032, 1217, 1310, 1593 |
| ZraI | GACGTC | 1 cut(s) | 304 |