Rorug05G0084000

Belongs to the pyruvate kinase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
7242499 .. 7242918
420 bp
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UTR
Exon/CDS
Intron
Rorug05G0084000.1

Sequence Viewer

Length: 420 bp
ATGTCGAGAGTTTTCAAACTGAAAAGTTCTGACAATGAAACATTCGAGGTTGAAGAAGCTGCAGCACTACTCTCTGAAACCATCAAGAGCTCATCGTCCACCGAGATTACAGTGCCAAACGTGAAGGCGGAAATCTTAGGCAAGGTGGTGGAGTGGTGCAACAAGCATGCAGAGAGTGAAGGCACCAAAGATCAACTCATCAAAGAGTGGGACGCTGAGTTCGTTAGTGTTGACCAACATGTTCTGTTCAAGCTCATAACGGCTGCAGACTATCTACAGATTAAGGAATTGGTGGATCAATTAACTCAAAGAGTTGGGGACATGATTAAGGCAAAGACATTGAAGACGGTAGAAATGACTTACCCAACGTTTAACGTCGAGAGAGAAGTGCAAGAGGAATTAAAATCATTGGGCTTCTGA

Protein Analysis

139

Amino Acids

15.77

Weight (kDa)

4.85

Isoelectric Point (pI)

27.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 4 - 57 5.6e-14 Skp1 family, tetramerisation domain
Pup_ligase PF03136 24 - 136 9.3e-06 Pup-ligase protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04050 AT3G25960 AT3G55650
fragaria_vesca FvH4_3g14970
malus_domestica MD10G1210700.v1.1
prunus_persica Prupe.4G134000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0024561
rosa_laevigata RLG00000032807
rosa_multiflora Rmu_sc0005699.1_g000007
rosa_rugosa Rorug05G0084000
rosa_samantha Rh5AG175700 Rh5CG189100 Rh5DG174800
rosa_wichuraiana Rw5G015880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 182
AciI CCGC 1 cut(s) 128
AclI AACGTT 1 cut(s) 368
AclWI GGATC 1 cut(s) 303
AflIII ACRYGT 1 cut(s) 238
AgsI TTSAA 4 cut(s) 16, 53, 250, 343
AloI GAACNNNNNNTCC 2 cut(s) 203, 235
AluBI AGCT 3 cut(s) 59, 90, 253
AluI AGCT 3 cut(s) 59, 90, 253
Alw21I GWGCWC 1 cut(s) 92
AlwI GGATC 1 cut(s) 303
ApeKI GCWGC 3 cut(s) 59, 62, 263
ArsI GACNNNNNNTTYG 2 cut(s) 203, 235
BanI GGYRCC 1 cut(s) 182
BanII GRGCYC 1 cut(s) 92
BbsI GAAGAC 1 cut(s) 350
Bbv12I GWGCWC 1 cut(s) 92
BbvI GCAGC 3 cut(s) 46, 74, 250
BccI CCATC 1 cut(s) 89
BceAI ACGGC 1 cut(s) 276
BfmI CTRYAG 3 cut(s) 60, 264, 275
BisI GCNGC 3 cut(s) 60, 63, 264
BlsI GCNGC 3 cut(s) 61, 64, 265
BmiI GGNNCC 1 cut(s) 184
BpiI GAAGAC 1 cut(s) 350
BseMII CTCAG 1 cut(s) 207
BseXI GCAGC 3 cut(s) 46, 74, 250
BshNI GGYRCC 1 cut(s) 182
BsiHKAI GWGCWC 1 cut(s) 92
BslFI GGGAC 2 cut(s) 224, 332
BsmFI GGGAC 2 cut(s) 224, 332
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 2 cut(s) 190, 295
BspACI CCGC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 184
BspMAI CTGCAG 2 cut(s) 64, 268
BspPI GGATC 1 cut(s) 303
BspT107I GGYRCC 1 cut(s) 182
BssMI GATC 2 cut(s) 190, 295
Bst4CI ACNGT 2 cut(s) 112, 349
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 2 cut(s) 136, 216
BstKTI GATC 2 cut(s) 193, 298
BstMBI GATC 2 cut(s) 190, 295
BstNSI RCATGY 2 cut(s) 170, 242
BstSFI CTRYAG 3 cut(s) 60, 264, 275
BstV1I GCAGC 3 cut(s) 46, 74, 250
BstV2I GAAGAC 1 cut(s) 350
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 168
CseI GACGC 1 cut(s) 221
CviAII CATG 3 cut(s) 167, 239, 322
CviJI RGCY 5 cut(s) 59, 90, 253, 263, 414
CviKI_1 RGCY 5 cut(s) 59, 90, 253, 263, 414
DdeI CTNAG 2 cut(s) 136, 216
DpnI GATC 2 cut(s) 192, 297
DpnII GATC 2 cut(s) 190, 295
EciI GGCGGA 1 cut(s) 143
Ecl136II GAGCTC 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 92
Eco53kI GAGCTC 1 cut(s) 90
EcoICRI GAGCTC 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 92
FaeI CATG 3 cut(s) 170, 242, 325
FaiI YATR 4 cut(s) 168, 240, 257, 323
FaqI GGGAC 2 cut(s) 224, 332
FatI CATG 3 cut(s) 166, 238, 321
Fnu4HI GCNGC 3 cut(s) 60, 63, 264
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 3 cut(s) 60, 63, 264
GluI GCNGC 3 cut(s) 60, 63, 264
HgaI GACGC 1 cut(s) 221
Hin1II CATG 3 cut(s) 170, 242, 325
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
Hpy166II GTNNAC 2 cut(s) 99, 232
Hpy188I TCNGA 3 cut(s) 31, 76, 419
Hpy188III TCNNGA 3 cut(s) 6, 85, 379
Hpy8I GTNNAC 2 cut(s) 99, 232
Hpy99I CGWCG 1 cut(s) 380
HpyAV CCTTC 2 cut(s) 118, 173
HpyCH4III ACNGT 2 cut(s) 112, 349
HpyCH4IV ACGT 3 cut(s) 120, 368, 375
HpyCH4V TGCA 5 cut(s) 62, 159, 170, 266, 391
HpyF3I CTNAG 2 cut(s) 136, 216
HpySE526I ACGT 3 cut(s) 120, 368, 375
Hsp92II CATG 3 cut(s) 170, 242, 325
Kzo9I GATC 2 cut(s) 190, 295
Lsp1109I GCAGC 3 cut(s) 46, 74, 250
MaeII ACGT 3 cut(s) 120, 368, 375
MalI GATC 2 cut(s) 192, 297
MboI GATC 2 cut(s) 190, 295
MboII GAAGA 2 cut(s) 65, 355
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 3 cut(s) 287, 299, 398
MnlI CCTC 2 cut(s) 40, 388
MseI TTAA 5 cut(s) 282, 302, 327, 372, 401
NdeII GATC 2 cut(s) 190, 295
NlaIII CATG 3 cut(s) 170, 242, 325
NlaIV GGNNCC 1 cut(s) 184
NspI RCATGY 2 cut(s) 170, 242
PaeI GCATGC 1 cut(s) 170
PciI ACATGT 1 cut(s) 238
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PkrI GCNGC 3 cut(s) 61, 64, 265
PscI ACATGT 1 cut(s) 238
Psp124BI GAGCTC 1 cut(s) 92
Psp1406I AACGTT 1 cut(s) 368
PspN4I GGNNCC 1 cut(s) 184
PstI CTGCAG 2 cut(s) 64, 268
SacI GAGCTC 1 cut(s) 92
SaqAI TTAA 5 cut(s) 282, 302, 327, 372, 401
SatI GCNGC 3 cut(s) 60, 63, 264
Sau3AI GATC 2 cut(s) 190, 295
SduI GDGCHC 1 cut(s) 92
SetI ASST 8 cut(s) 51, 61, 92, 123, 147, 255, 371, 378
SfcI CTRYAG 3 cut(s) 60, 264, 275
SphI GCATGC 1 cut(s) 170
Sse9I AATT 3 cut(s) 287, 299, 398
SsiI CCGC 1 cut(s) 128
SstI GAGCTC 1 cut(s) 92
TaaI ACNGT 2 cut(s) 112, 349
TaiI ACGT 3 cut(s) 123, 371, 378
TaqI TCGA 3 cut(s) 5, 45, 378
TasI AATT 3 cut(s) 287, 299, 398
Tru1I TTAA 5 cut(s) 282, 302, 327, 372, 401
Tru9I TTAA 5 cut(s) 282, 302, 327, 372, 401
TscAI CASTG 1 cut(s) 117
TseI GCWGC 3 cut(s) 59, 62, 263
TspDTI ATGAA 1 cut(s) 51
TspRI CASTG 1 cut(s) 117
XceI RCATGY 2 cut(s) 170, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.