Rorug05G0103300

cationic amino acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0006530
Physical Location & Seq
Reverse (-)
9088541 .. 9088951
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0103300.1

Sequence Viewer

Length: 255 bp
ATGGTTTCTGTAAATGCAAGTGGTATGAAGGTGAAAGCCGACAGAGATGAATCTTCTTCATACGCAACTATGCTTGCAGCACAGGATGTTTCTACAAGATGCAAGGAATTTGGTATTACTGCTCTTCATATTAAGCTGCGGGCAACTAGTGGCAACAAAACTAAGACACCTGGCCCTAGTGCCCAGTCTGCACTCCGTGCTCTTGCTCGTTCTGGAATGAGAATTGGTCGTATAGGTAACATTTCATATTTTTAA

Protein Analysis

84

Amino Acids

8.94

Weight (kDa)

10.43

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S11 PF00411 4 - 81 2.8e-19 Ribosomal protein S11
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 139
AcsI RAATTY 1 cut(s) 107
AdeI CACNNNGTG 1 cut(s) 197
AhlI ACTAGT 1 cut(s) 146
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
Alw21I GWGCWC 1 cut(s) 202
AoxI GGCC 1 cut(s) 172
ApeKI GCWGC 2 cut(s) 77, 136
ApoI RAATTY 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 43
BaeGI GKGCMC 1 cut(s) 184
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 2 cut(s) 89, 123
BciT130I CCWGG 1 cut(s) 171
BcuI ACTAGT 1 cut(s) 146
BfaI CTAG 2 cut(s) 147, 177
BisI GCNGC 2 cut(s) 78, 137
BlsI GCNGC 2 cut(s) 79, 138
Bme1390I CCNGG 1 cut(s) 171
BmgT120I GGNCC 1 cut(s) 173
BmrFI CCNGG 1 cut(s) 171
BmrI ACTGGG 1 cut(s) 178
BmsI GCATC 1 cut(s) 89
BmuI ACTGGG 1 cut(s) 178
Bse1I ACTGG 1 cut(s) 184
BseBI CCWGG 1 cut(s) 171
BseGI GGATG 1 cut(s) 91
BseNI ACTGG 1 cut(s) 184
BseSI GKGCMC 1 cut(s) 184
BseXI GCAGC 2 cut(s) 89, 123
BsgI GTGCAG 1 cut(s) 174
BshFI GGCC 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 202
BsnI GGCC 1 cut(s) 174
Bsp1286I GDGCHC 2 cut(s) 184, 202
BspACI CCGC 1 cut(s) 139
BspANI GGCC 1 cut(s) 174
BspQI GCTCTTC 1 cut(s) 129
BsrI ACTGG 1 cut(s) 184
Bst2UI CCWGG 1 cut(s) 171
Bst6I CTCTTC 1 cut(s) 129
BstAPI GCANNNNNTGC 1 cut(s) 197
BstC8I GCNNGC 2 cut(s) 75, 141
BstDEI CTNAG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 91
BstMWI GCNNNNNNNGC 2 cut(s) 188, 197
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
BstSLI GKGCMC 1 cut(s) 184
BstV1I GCAGC 2 cut(s) 89, 123
BsuRI GGCC 1 cut(s) 174
BtsCI GGATG 1 cut(s) 91
Cac8I GCNNGC 2 cut(s) 75, 141
Cfr13I GGNCC 1 cut(s) 173
CviJI RGCY 3 cut(s) 38, 136, 174
CviKI_1 RGCY 3 cut(s) 38, 136, 174
DdeI CTNAG 1 cut(s) 162
DraIII CACNNNGTG 1 cut(s) 197
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 169
FaiI YATR 6 cut(s) 26, 61, 71, 129, 233, 247
FauI CCCGC 1 cut(s) 132
Fnu4HI GCNGC 2 cut(s) 78, 137
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 2 cut(s) 78, 137
FspBI CTAG 2 cut(s) 147, 177
GluI GCNGC 2 cut(s) 78, 137
HaeIII GGCC 1 cut(s) 174
HinfI GANTC 1 cut(s) 50
HphI GGTGA 1 cut(s) 43
Hpy188III TCNNGA 1 cut(s) 213
HpyAV CCTTC 1 cut(s) 22
HpyCH4V TGCA 4 cut(s) 17, 77, 102, 191
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 197
HpyF3I CTNAG 1 cut(s) 162
LguI GCTCTTC 1 cut(s) 129
LpnPI CCDG 5 cut(s) 68, 156, 183, 197, 198
Lsp1109I GCAGC 2 cut(s) 89, 123
LweI GCATC 1 cut(s) 89
MaeI CTAG 2 cut(s) 147, 177
MaeIII GTNAC 1 cut(s) 236
MboII GAAGA 3 cut(s) 45, 48, 116
MhlI GDGCHC 2 cut(s) 184, 202
MluCI AATT 2 cut(s) 107, 222
MseI TTAA 2 cut(s) 132, 253
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 2 cut(s) 188, 197
PciSI GCTCTTC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 50
PkrI GCNGC 2 cut(s) 79, 138
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspPI GGNCC 1 cut(s) 173
SapI GCTCTTC 1 cut(s) 129
SaqAI TTAA 2 cut(s) 132, 253
SatI GCNGC 2 cut(s) 78, 137
Sau96I GGNCC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 2 cut(s) 184, 202
SetI ASST 4 cut(s) 33, 138, 172, 238
SfaNI GCATC 1 cut(s) 89
SpeI ACTAGT 1 cut(s) 146
Sse9I AATT 2 cut(s) 107, 222
SsiI CCGC 1 cut(s) 139
SspMI CTAG 2 cut(s) 147, 177
StyD4I CCNGG 1 cut(s) 169
TasI AATT 2 cut(s) 107, 222
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 2 cut(s) 132, 253
Tru9I TTAA 2 cut(s) 132, 253
TseI GCWGC 2 cut(s) 77, 136
TspDTI ATGAA 5 cut(s) 41, 48, 63, 116, 234
TspGWI ACGGA 1 cut(s) 185
XapI RAATTY 1 cut(s) 107
XspI CTAG 2 cut(s) 147, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.