Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006530

Physical Location & Seq

Genomic Coordinates Reverse (-)

9097499 .. 9099703

Gene Structure 2205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0103500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGCAAACCGATAGTTACTTGTTGCTGCCTGCAAATCCCTCTATATTCACTCCTAGTCTTGCAACCTATGGTGGAATATCACCAAGTGCACAATGCTTGTTTTGCTCAAACTTCAAGAATCTTGCAGCAGCCTGGTTTTCACAACTTTCTGCAACCTATGGTGTTGGTAGTGCTGTGGGCATCTCATCCAAGATGGGACTGCTGTGGTTGCTTTGCAAGAATGTTGAATTCAGAGACGGAGAACATGTTTTTGGTGTCGCACACGTTTTCGCCTCTTTTGATGACACATTCATTCATGTGACTGATCTCTCTGGAAGGAAAACTTTGATCCGTATCACTGGTGGTATGAAGGTGTATGGGGATGAGTCTTCCCCATACGCAGCTATGCTTGCAGCACAGGATGTTTCTATGAGATGCAAGAAATTGGGTATTACTGCTCTTCATATTAAGTTGTGGGCAACGGGTGGCAACAAAACTAAGACACCTGGCTCTGGTGCCCAGTCTGCACTCCGTGCTCTTGCTTGTTCTGGAATGAGAATTGGTCGTATTGAGGATGCGACTCCAATTCCTGGGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

192

Amino Acids

20.44

Weight (kDa)

9.02

Isoelectric Point (pI)

35.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S11	PF00411	85 - 190	4.9e-33	Ribosomal protein S11

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17120
fragaria_vesca	FvH4_3g16770
malus_domestica	MD05G1206900.v1.1
prunus_persica	Prupe.4G150300_v2.0.a1
pyrus_communis	pycom05g19300 pycom10g16780
rosa_chinensis	RchiOBHm_Chr5g0028011 RchiOBHm_Chr5g0028021
rosa_laevigata	RLG00000033057 RLG00000033058
rosa_multiflora	Rmu_sc0009432.1_g000015 Rmu_sc0009432.1_g000016 Rmu_sc0009432.1_g000017 Rmu_sc0009561.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051640 Rroxscaffold_1G00051650
rosa_rugosa	Rorug05G0103300 Rorug05G0103500
rosa_samantha	Rh5AG197100 Rh5BG195200 Rh5BG195300 Rh5CG215300 Rh5DG196800 Rh5DG196900
rosa_wichuraiana	Rw5G017960 Rw5G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	494
AccB7I	CCANNNNNTGG	1 cut(s)	569
AclWI	GGATC	1 cut(s)	322
AcsI	RAATTY	1 cut(s)	227
AdeI	CACNNNGTG	2 cut(s)	86, 512
AfiI	CCNNNNNNNGG	2 cut(s)	491, 569
AflIII	ACRYGT	2 cut(s)	244, 262
AgsI	TTSAA	2 cut(s)	115, 227
AjnI	CCWGG	3 cut(s)	131, 484, 568
AjuI	GAANNNNNNNTTGG	2 cut(s)	234, 266
AluBI	AGCT	1 cut(s)	383
AluI	AGCT	1 cut(s)	383
Alw21I	GWGCWC	2 cut(s)	91, 517
Alw26I	GTCTC	1 cut(s)	228
Alw44I	GTGCAC	1 cut(s)	87
AlwI	GGATC	1 cut(s)	322
ApaLI	GTGCAC	1 cut(s)	87
ApeKI	GCWGC	5 cut(s)	25, 125, 128, 380, 392
ApoI	RAATTY	1 cut(s)	227
AsuHPI	GGTGA	1 cut(s)	72
BaeGI	GKGCMC	2 cut(s)	91, 499
BanI	GGYRCC	1 cut(s)	494
BbsI	GAAGAC	1 cut(s)	360
Bbv12I	GWGCWC	2 cut(s)	91, 517
BbvI	GCAGC	5 cut(s)	12, 137, 140, 392, 404
BccI	CCATC	1 cut(s)	187
BciT130I	CCWGG	3 cut(s)	133, 486, 570
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	1 cut(s)	54
BisI	GCNGC	5 cut(s)	26, 126, 129, 381, 393
BlsI	GCNGC	5 cut(s)	27, 127, 130, 382, 394
Bme1390I	CCNGG	3 cut(s)	133, 486, 570
BmiI	GGNNCC	1 cut(s)	496
BmrFI	CCNGG	3 cut(s)	133, 486, 570
BmrI	ACTGGG	1 cut(s)	493
BmsI	GCATC	3 cut(s)	189, 404, 544
BmuI	ACTGGG	1 cut(s)	493
BpiI	GAAGAC	1 cut(s)	360
BsaBI	GATNNNNATC	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	569
BsaXI	ACNNNNNCTCC	2 cut(s)	231, 261
Bsc4I	CCNNNNNNNGG	2 cut(s)	491, 569
Bse1I	ACTGG	2 cut(s)	343, 499
Bse8I	GATNNNNATC	1 cut(s)	332
BseBI	CCWGG	3 cut(s)	133, 486, 570
BseDI	CCNNGG	1 cut(s)	569
BseGI	GGATG	4 cut(s)	185, 367, 406, 559
BseJI	GATNNNNATC	1 cut(s)	332
BseLI	CCNNNNNNNGG	2 cut(s)	491, 569
BseNI	ACTGG	2 cut(s)	343, 499
BseSI	GKGCMC	2 cut(s)	91, 499
BseXI	GCAGC	5 cut(s)	12, 137, 140, 392, 404
BsgI	GTGCAG	1 cut(s)	489
BshNI	GGYRCC	1 cut(s)	494
BsiHKAI	GWGCWC	2 cut(s)	91, 517
BslFI	GGGAC	1 cut(s)	210
BslI	CCNNNNNNNGG	2 cut(s)	491, 569
BsmAI	GTCTC	1 cut(s)	228
BsmBI	CGTCTC	1 cut(s)	228
BsmFI	GGGAC	1 cut(s)	210
Bsp1286I	GDGCHC	3 cut(s)	91, 499, 517
Bsp143I	GATC	2 cut(s)	304, 327
BspLI	GGNNCC	1 cut(s)	496
BspPI	GGATC	1 cut(s)	322
BspQI	GCTCTTC	1 cut(s)	444
BspT107I	GGYRCC	1 cut(s)	494
BsrI	ACTGG	2 cut(s)	343, 499
BssECI	CCNNGG	1 cut(s)	569
BssMI	GATC	2 cut(s)	304, 327
Bst2UI	CCWGG	3 cut(s)	133, 486, 570
Bst6I	CTCTTC	1 cut(s)	444
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstC8I	GCNNGC	2 cut(s)	30, 390
BstDEI	CTNAG	1 cut(s)	477
BstF5I	GGATG	4 cut(s)	185, 367, 406, 559
BstKTI	GATC	2 cut(s)	307, 330
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	2 cut(s)	304, 327
BstMWI	GCNNNNNNNGC	5 cut(s)	102, 208, 389, 503, 512
BstNI	CCWGG	3 cut(s)	133, 486, 570
BstNSI	RCATGY	1 cut(s)	248
BstSCI	CCNGG	3 cut(s)	131, 484, 568
BstSLI	GKGCMC	2 cut(s)	91, 499
BstV1I	GCAGC	5 cut(s)	12, 137, 140, 392, 404
BstV2I	GAAGAC	1 cut(s)	360
BtsCI	GGATG	4 cut(s)	185, 367, 406, 559
BtsIMutI	CAGTG	1 cut(s)	336
Cac8I	GCNNGC	2 cut(s)	30, 390
CviAII	CATG	2 cut(s)	245, 296
CviJI	RGCY	3 cut(s)	131, 383, 489
CviKI_1	RGCY	3 cut(s)	131, 383, 489
DdeI	CTNAG	1 cut(s)	477
DpnI	GATC	2 cut(s)	306, 329
DpnII	GATC	2 cut(s)	304, 327
DraIII	CACNNNGTG	2 cut(s)	86, 512
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
EcoRI	GAATTC	1 cut(s)	227
EcoRII	CCWGG	3 cut(s)	131, 484, 568
Esp3I	CGTCTC	1 cut(s)	228
FaeI	CATG	2 cut(s)	248, 299
FalI	AAGNNNNNCTT	2 cut(s)	307, 339
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	2 cut(s)	244, 295
Fnu4HI	GCNGC	5 cut(s)	26, 126, 129, 381, 393
FokI	GGATG	4 cut(s)	172, 374, 413, 566
Fsp4HI	GCNGC	5 cut(s)	26, 126, 129, 381, 393
FspBI	CTAG	1 cut(s)	54
GluI	GCNGC	5 cut(s)	26, 126, 129, 381, 393
Hin1II	CATG	2 cut(s)	248, 299
HinfI	GANTC	3 cut(s)	118, 365, 559
HphI	GGTGA	1 cut(s)	72
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	1 cut(s)	233
Hpy188III	TCNNGA	3 cut(s)	115, 312, 528
Hpy8I	GTNNAC	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	309, 343
HpyCH4IV	ACGT	1 cut(s)	264
HpyF10VI	GCNNNNNNNGC	5 cut(s)	102, 208, 389, 503, 512
HpyF3I	CTNAG	1 cut(s)	477
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	248, 299
Kzo9I	GATC	2 cut(s)	304, 327
LguI	GCTCTTC	1 cut(s)	444
Lsp1109I	GCAGC	5 cut(s)	12, 137, 140, 392, 404
LweI	GCATC	3 cut(s)	189, 404, 544
MaeI	CTAG	1 cut(s)	54
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	2 cut(s)	14, 298
MalI	GATC	2 cut(s)	306, 329
MboI	GATC	2 cut(s)	304, 327
MboII	GAAGA	2 cut(s)	360, 431
MhlI	GDGCHC	3 cut(s)	91, 499, 517
MluCI	AATT	4 cut(s)	227, 422, 537, 564
MlyI	GAGTC	2 cut(s)	374, 553
MnlI	CCTC	3 cut(s)	49, 283, 544
MseI	TTAA	1 cut(s)	447
MslI	CAYNNNNRTG	1 cut(s)	296
MspR9I	CCNGG	3 cut(s)	133, 486, 570
MvaI	CCWGG	3 cut(s)	133, 486, 570
MwoI	GCNNNNNNNGC	5 cut(s)	102, 208, 389, 503, 512
NdeII	GATC	2 cut(s)	304, 327
NlaIII	CATG	2 cut(s)	248, 299
NlaIV	GGNNCC	1 cut(s)	496
NmuCI	GTSAC	1 cut(s)	298
NspI	RCATGY	1 cut(s)	248
PciI	ACATGT	1 cut(s)	244
PciSI	GCTCTTC	1 cut(s)	444
PfeI	GAWTC	1 cut(s)	118
PflMI	CCANNNNNTGG	1 cut(s)	569
PkrI	GCNGC	5 cut(s)	27, 127, 130, 382, 394
PleI	GAGTC	2 cut(s)	373, 553
PpsI	GAGTC	2 cut(s)	373, 553
PscI	ACATGT	1 cut(s)	244
Psp6I	CCWGG	3 cut(s)	131, 484, 568
PspGI	CCWGG	3 cut(s)	131, 484, 568
PspN4I	GGNNCC	1 cut(s)	496
RseI	CAYNNNNRTG	1 cut(s)	296
SapI	GCTCTTC	1 cut(s)	444
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	5 cut(s)	26, 126, 129, 381, 393
Sau3AI	GATC	2 cut(s)	304, 327
SchI	GAGTC	2 cut(s)	374, 553
ScrFI	CCNGG	3 cut(s)	133, 486, 570
SduI	GDGCHC	3 cut(s)	91, 499, 517
SetI	ASST	6 cut(s)	68, 158, 267, 354, 385, 487
SfaNI	GCATC	3 cut(s)	189, 404, 544
SmiMI	CAYNNNNRTG	1 cut(s)	296
Sse9I	AATT	4 cut(s)	227, 422, 537, 564
SspMI	CTAG	1 cut(s)	54
StyD4I	CCNGG	3 cut(s)	131, 484, 568
TaiI	ACGT	1 cut(s)	267
TasI	AATT	4 cut(s)	227, 422, 537, 564
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	1 cut(s)	343
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	5 cut(s)	25, 125, 128, 380, 392
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	4 cut(s)	280, 284, 362, 431
TspGWI	ACGGA	3 cut(s)	252, 320, 500
TspRI	CASTG	1 cut(s)	343
Van91I	CCANNNNNTGG	1 cut(s)	569
VneI	GTGCAC	1 cut(s)	87
XapI	RAATTY	1 cut(s)	227
XceI	RCATGY	1 cut(s)	248
XcmI	CCANNNNNNNNNTGG	1 cut(s)	570
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.