Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0017820

Physical Location & Seq

Genomic Coordinates Forward (+)

10900006 .. 10900464

Gene Structure 459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0123500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCACCATCTGACCAGACCTTCACTCTGAACATGACCACATTCACCTACGACAACCCAACCGGGAAACCGGCAGCAGCCACTCTCCAAATTCGCATGTGCCATTGGTACCAAGTCCATCTCCAAACCTACAACAAAGACGGGACACATCCACTCACTTTCTTCGACGAAGAATGCTCCGAAGAGGTGATTAGCAATCCCTTCACTATGCCTCCGCTGGTCATAACCCTGCTCCCACTGCGCAGGCTCTGCGTGCTCAACGCGCTCGCAAGCCTGAACATTGATGGATCCTTGTGTGAGTGTTTGGGACCAAAAATAGAGAAGTATGTGTTCCGGGCAGCAGAGACTTTTGGGTACAAGGGCTTTGGGGTGGTGGCGGAGCTTGAAGTCACAAAAGCATATGTTTATGATCATAAAACAGAACAGTACAACAAGATTGGATTAGTGCCACAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

152

Amino Acids

17.13

Weight (kDa)

5.5

Isoelectric Point (pI)

63.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017820)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0077151
rosa_roxburghii	Rroxscaffold_3G00256660
rosa_rugosa	Rorug01G0129100 Rorug03G0141000 Rorug03G0231300.1 Rorug03G0247700 Rorug04G0208500 Rorug05G0123500 Rorug05G0177500 Rorug05G0540000 Rorug06G0206400
rosa_samantha	Rh5BG446100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	242
Acc65I	GGTACC	1 cut(s)	108
AccB1I	GGYRCC	2 cut(s)	4, 108
AccII	CGCG	1 cut(s)	263
AciI	CCGC	2 cut(s)	215, 377
AclWI	GGATC	2 cut(s)	282, 295
AcsI	RAATTY	1 cut(s)	90
AfaI	GTAC	3 cut(s)	110, 356, 428
AgsI	TTSAA	1 cut(s)	386
AluBI	AGCT	2 cut(s)	382, 456
AluI	AGCT	2 cut(s)	382, 456
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	1 cut(s)	338
AlwI	GGATC	2 cut(s)	282, 295
AlwNI	CAGNNNCTG	1 cut(s)	249
ApeKI	GCWGC	3 cut(s)	74, 77, 338
ApoI	RAATTY	1 cut(s)	90
Asp718I	GGTACC	1 cut(s)	108
AspLEI	GCGC	2 cut(s)	243, 265
AspS9I	GGNCC	1 cut(s)	308
AsuC2I	CCSGG	2 cut(s)	64, 335
AsuHPI	GGTGA	2 cut(s)	37, 199
AvaII	GGWCC	1 cut(s)	308
BamHI	GGATCC	1 cut(s)	287
BanI	GGYRCC	2 cut(s)	4, 108
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	3 cut(s)	86, 89, 350
BccI	CCATC	3 cut(s)	16, 126, 278
BclI	TGATCA	1 cut(s)	409
BcnI	CCSGG	2 cut(s)	64, 335
BcoDI	GTCTC	1 cut(s)	338
BisI	GCNGC	3 cut(s)	75, 78, 339
BlsI	GCNGC	3 cut(s)	76, 79, 340
Bme1390I	CCNGG	2 cut(s)	64, 335
Bme18I	GGWCC	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	4 cut(s)	6, 110, 289, 309
BmrFI	CCNGG	2 cut(s)	64, 335
BpuMI	CCSGG	2 cut(s)	64, 335
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bse118I	RCCGGY	1 cut(s)	70
BseGI	GGATG	1 cut(s)	148
BseXI	GCAGC	3 cut(s)	86, 89, 350
Bsh1236I	CGCG	1 cut(s)	263
BshNI	GGYRCC	2 cut(s)	4, 108
BsiHKAI	GWGCWC	1 cut(s)	258
BsiSI	CCGG	3 cut(s)	63, 71, 334
BslFI	GGGAC	2 cut(s)	157, 321
BsmAI	GTCTC	1 cut(s)	338
BsmFI	GGGAC	2 cut(s)	157, 321
BsmI	GAATGC	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	2 cut(s)	287, 409
BspACI	CCGC	2 cut(s)	215, 377
BspFNI	CGCG	1 cut(s)	263
BspLI	GGNNCC	4 cut(s)	6, 110, 289, 309
BspPI	GGATC	2 cut(s)	282, 295
BspT107I	GGYRCC	2 cut(s)	4, 108
BsrFI	RCCGGY	1 cut(s)	70
BssAI	RCCGGY	1 cut(s)	70
BssMI	GATC	2 cut(s)	287, 409
Bst4CI	ACNGT	1 cut(s)	426
Bst6I	CTCTTC	1 cut(s)	177
BstAPI	GCANNNNNTGC	1 cut(s)	249
BstC8I	GCNNGC	4 cut(s)	245, 254, 267, 271
BstF5I	GGATG	1 cut(s)	148
BstFNI	CGCG	1 cut(s)	263
BstHHI	GCGC	2 cut(s)	243, 265
BstKTI	GATC	2 cut(s)	290, 412
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	2 cut(s)	287, 409
BstMWI	GCNNNNNNNGC	4 cut(s)	238, 249, 253, 262
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	2 cut(s)	62, 333
BstUI	CGCG	1 cut(s)	263
BstV1I	GCAGC	3 cut(s)	86, 89, 350
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
BtsCI	GGATG	1 cut(s)	148
BtsI	GCAGTG	1 cut(s)	236
BtsIMutI	CAGTG	1 cut(s)	236
Cac8I	GCNNGC	4 cut(s)	245, 254, 267, 271
CaiI	CAGNNNCTG	1 cut(s)	249
CfoI	GCGC	2 cut(s)	243, 265
Cfr10I	RCCGGY	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	308
Csp6I	GTAC	3 cut(s)	109, 355, 427
CviAII	CATG	2 cut(s)	34, 97
CviJI	RGCY	6 cut(s)	80, 247, 273, 363, 382, 456
CviKI_1	RGCY	6 cut(s)	80, 247, 273, 363, 382, 456
CviQI	GTAC	3 cut(s)	109, 355, 427
DpnI	GATC	2 cut(s)	289, 411
DpnII	GATC	2 cut(s)	287, 409
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
EciI	GGCGGA	1 cut(s)	392
Eco47I	GGWCC	1 cut(s)	308
FaeI	CATG	2 cut(s)	37, 100
FaiI	YATR	9 cut(s)	35, 98, 209, 224, 327, 400, 402, 408, 414
FaqI	GGGAC	2 cut(s)	157, 321
FatI	CATG	2 cut(s)	33, 96
FauNDI	CATATG	1 cut(s)	400
FbaI	TGATCA	1 cut(s)	409
Fnu4HI	GCNGC	3 cut(s)	75, 78, 339
FokI	GGATG	1 cut(s)	135
Fsp4HI	GCNGC	3 cut(s)	75, 78, 339
FspI	TGCGCA	1 cut(s)	242
GlaI	GCGC	2 cut(s)	242, 264
GluI	GCNGC	3 cut(s)	75, 78, 339
HapII	CCGG	3 cut(s)	63, 71, 334
HhaI	GCGC	2 cut(s)	243, 265
Hin1II	CATG	2 cut(s)	37, 100
Hin6I	GCGC	2 cut(s)	241, 263
HinP1I	GCGC	2 cut(s)	241, 263
HpaII	CCGG	3 cut(s)	63, 71, 334
HphI	GGTGA	2 cut(s)	37, 199
Hpy188I	TCNGA	3 cut(s)	13, 30, 181
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	2 cut(s)	31, 211
HpyCH4III	ACNGT	1 cut(s)	426
HpyF10VI	GCNNNNNNNGC	4 cut(s)	238, 249, 253, 262
Hsp92II	CATG	2 cut(s)	37, 100
HspAI	GCGC	2 cut(s)	241, 263
KpnI	GGTACC	1 cut(s)	112
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	2 cut(s)	287, 409
LmnI	GCTCC	3 cut(s)	182, 237, 379
LpnPI	CCDG	8 cut(s)	29, 76, 84, 203, 229, 242, 287, 347
Lsp1109I	GCAGC	3 cut(s)	86, 89, 350
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	2 cut(s)	289, 411
MboI	GATC	2 cut(s)	287, 409
MboII	GAAGA	3 cut(s)	154, 182, 194
MflI	RGATCY	1 cut(s)	287
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	1 cut(s)	90
MnlI	CCTC	2 cut(s)	178, 222
MspA1I	CMGCKG	1 cut(s)	217
MspI	CCGG	3 cut(s)	63, 71, 334
MspR9I	CCNGG	2 cut(s)	64, 335
Mva1269I	GAATGC	1 cut(s)	179
MvnI	CGCG	1 cut(s)	263
MwoI	GCNNNNNNNGC	4 cut(s)	238, 249, 253, 262
NciI	CCSGG	2 cut(s)	64, 335
NdeI	CATATG	1 cut(s)	400
NdeII	GATC	2 cut(s)	287, 409
NlaIII	CATG	2 cut(s)	37, 100
NlaIV	GGNNCC	4 cut(s)	6, 110, 289, 309
NmuCI	GTSAC	1 cut(s)	388
NsbI	TGCGCA	1 cut(s)	242
NspI	RCATGY	1 cut(s)	100
PctI	GAATGC	1 cut(s)	179
PkrI	GCNGC	3 cut(s)	76, 79, 340
PspN4I	GGNNCC	4 cut(s)	6, 110, 289, 309
PspPI	GGNCC	1 cut(s)	308
PstNI	CAGNNNCTG	1 cut(s)	249
PsuI	RGATCY	1 cut(s)	287
RsaI	GTAC	3 cut(s)	110, 356, 428
RsaNI	GTAC	3 cut(s)	109, 355, 427
SatI	GCNGC	3 cut(s)	75, 78, 339
Sau3AI	GATC	2 cut(s)	287, 409
Sau96I	GGNCC	1 cut(s)	308
ScrFI	CCNGG	2 cut(s)	64, 335
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	6 cut(s)	23, 50, 131, 189, 384, 458
SinI	GGWCC	1 cut(s)	308
Sse9I	AATT	1 cut(s)	90
SsiI	CCGC	2 cut(s)	215, 377
StyD4I	CCNGG	2 cut(s)	62, 333
TaaI	ACNGT	1 cut(s)	426
TaqI	TCGA	1 cut(s)	165
TasI	AATT	1 cut(s)	90
TatI	WGTACW	1 cut(s)	426
TscAI	CASTG	1 cut(s)	243
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	3 cut(s)	74, 77, 338
Tsp45I	GTSAC	1 cut(s)	388
TspRI	CASTG	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	308
XapI	RAATTY	1 cut(s)	90
XceI	RCATGY	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.