Rorug03G0247700
MYB Family

ribonuclease H protein At1g65750-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000240
Physical Location & Seq
Reverse (-)
23286058 .. 23290191
4134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0247700.1

Sequence Viewer

Length: 1038 bp
ATGAAGGTAAATCTTGATTATCAAGGCTATGTGAATACGATTGTTTGTACTCACATCGACCAGGGTGCAAAGAATGTTGTCTGCATGAGTGGCGGTATTGAAATGCAGATGGGCAGTAAGATCTGTAGTGTAGTGTCTCGTGGAGCATCCAGTTCCTGTTGTTACCGACTGCAGCCGGGGAAATCGGGAAATAAATTTGGCGGCTTATCCCTCACCAAGAGTCGTCCATCTGAAATTGGCCAAACACCCCATGGAAGCTGTTTCAGGTCTTGCTTCTCCACGGATATGGGCAACTCACGGTCATTAACAGTTAATGCTAGAAAACCTCAGAAACGATGTCTAGAAATTTCATTGGCATGTCAGGGTATGAAAACGAGATTTTTGGTCCCAAGACAAGGAATGCTTCCCAAAATCAAGTGTAATGTGGGCCCAGTGTCATGGCCACAAGGATGTGCGTCTGCTGGTTTGATTTTTGGGTTGCTGATTTGTAATTCTTCTGAGCCAACACACGCTGAAGCAGCTTGTAAGACTGATGATAAGGAATATGACGGTGATTTGTCATATTCACATGGAAAAAAAGTTTATACTGATTATTCCATTATTGGAATACCTGGAGATGGAAGGTGCATGTTCCGCTCTGTTGCTCATGGCGCTTGTTTACGAGCGGGAAAATCAGCTCCTAGTCCAAGCCTTCAAAGAGAATTAGCAGATGACTTGAGAGCTAGAGTTGCAGATGAGTTTATCAAAAGGAGAGAAGAGACAGAATGGTTTGTTGAAGGTGATTTTGACACATATGTCTCCCAAATAAGAAAGCCACATGTATGGGGAGGCGAGCCTGAATTGTTAATGGCTTCACATGTTCTTGAAATGCCGATCACAGTATACATGTATGATGAAAAGGCTGGCGGCTTGATAACCATTGCTGAGTATGGGCAAGAATATGGGAAGGAAAATCCAATCAGAGTTCTCTATCATGGTTTTGGCCATTATGATGCATTGCATATTCCGGGAAAGAGTGGTGGTAAATCTAGGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

345

Amino Acids

37.79

Weight (kDa)

8.64

Isoelectric Point (pI)

51.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 204 - 330 7.7e-29 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 794
AccBSI CCGCTC 2 cut(s) 636, 665
AccI GTMKAC 1 cut(s) 882
AciI CCGC 5 cut(s) 93, 201, 634, 665, 906
AcoI YGGCCR 3 cut(s) 238, 440, 982
AcsI RAATTY 2 cut(s) 194, 345
AcuI CTGAAG 1 cut(s) 534
AfaI GTAC 1 cut(s) 49
AfiI CCNNNNNNNGG 2 cut(s) 395, 617
AflIII ACRYGT 3 cut(s) 817, 856, 885
AgsI TTSAA 4 cut(s) 101, 695, 776, 866
AjnI CCWGG 2 cut(s) 60, 610
AluBI AGCT 4 cut(s) 258, 521, 677, 722
AluI AGCT 4 cut(s) 258, 521, 677, 722
Alw26I GTCTC 3 cut(s) 141, 752, 802
AlwNI CAGNNNCTG 1 cut(s) 156
AoxI GGCC 4 cut(s) 238, 427, 440, 982
ApaI GGGCCC 1 cut(s) 431
ApeKI GCWGC 2 cut(s) 172, 518
ApoI RAATTY 2 cut(s) 194, 345
AspLEI GCGC 1 cut(s) 653
AspS9I GGNCC 3 cut(s) 385, 427, 428
AsuC2I CCSGG 2 cut(s) 177, 1008
AsuHPI GGTGA 3 cut(s) 205, 563, 791
AvaII GGWCC 1 cut(s) 385
BaeGI GKGCMC 1 cut(s) 431
BalI TGGCCA 3 cut(s) 240, 442, 984
BanII GRGCYC 1 cut(s) 431
BauI CACGAG 1 cut(s) 138
BbvI GCAGC 2 cut(s) 184, 530
BccI CCATC 3 cut(s) 103, 235, 611
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BciT130I CCWGG 2 cut(s) 62, 612
BcnI CCSGG 2 cut(s) 177, 1008
BcoDI GTCTC 3 cut(s) 141, 752, 802
BfaI CTAG 5 cut(s) 318, 341, 681, 723, 1029
BfmI CTRYAG 2 cut(s) 124, 170
BfoI RGCGCY 1 cut(s) 654
BglII AGATCT 1 cut(s) 120
BisI GCNGC 4 cut(s) 173, 202, 519, 907
BlsI GCNGC 4 cut(s) 174, 203, 520, 908
Bme1390I CCNGG 4 cut(s) 62, 177, 612, 1008
Bme18I GGWCC 1 cut(s) 385
BmgT120I GGNCC 3 cut(s) 385, 427, 428
BmiI GGNNCC 2 cut(s) 387, 429
BmrFI CCNGG 4 cut(s) 62, 177, 612, 1008
BmrI ACTGGG 1 cut(s) 425
BmsI GCATC 2 cut(s) 155, 982
BmuI ACTGGG 1 cut(s) 425
BpmI CTGGAG 1 cut(s) 633
BpuEI CTTGAG 1 cut(s) 736
BpuMI CCSGG 2 cut(s) 177, 1008
BsaJI CCNNGG 4 cut(s) 61, 176, 250, 279
Bsc4I CCNNNNNNNGG 2 cut(s) 395, 617
Bse1I ACTGG 2 cut(s) 150, 431
Bse3DI GCAATG 2 cut(s) 918, 995
BseBI CCWGG 2 cut(s) 62, 612
BseDI CCNNGG 4 cut(s) 61, 176, 250, 279
BseGI GGATG 2 cut(s) 146, 455
BseLI CCNNNNNNNGG 2 cut(s) 395, 617
BseMI GCAATG 2 cut(s) 918, 995
BseMII CTCAG 3 cut(s) 341, 489, 915
BseNI ACTGG 2 cut(s) 150, 431
BseSI GKGCMC 1 cut(s) 431
BseXI GCAGC 2 cut(s) 184, 530
BshFI GGCC 4 cut(s) 240, 429, 442, 984
BsiSI CCGG 2 cut(s) 176, 1007
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 2 cut(s) 395, 617
BsmAI GTCTC 3 cut(s) 141, 752, 802
BsmFI GGGAC 1 cut(s) 371
BsmI GAATGC 1 cut(s) 405
BsnI GGCC 4 cut(s) 240, 429, 442, 984
Bsp120I GGGCCC 1 cut(s) 427
Bsp1286I GDGCHC 1 cut(s) 431
Bsp143I GATC 2 cut(s) 120, 873
Bsp19I CCATGG 1 cut(s) 250
BspACI CCGC 5 cut(s) 93, 201, 634, 665, 906
BspANI GGCC 4 cut(s) 240, 429, 442, 984
BspCNI CTCAG 3 cut(s) 340, 490, 916
BspLI GGNNCC 2 cut(s) 387, 429
BspMAI CTGCAG 1 cut(s) 174
BsrBI CCGCTC 2 cut(s) 636, 665
BsrDI GCAATG 2 cut(s) 918, 995
BsrI ACTGG 2 cut(s) 150, 431
BssECI CCNNGG 4 cut(s) 61, 176, 250, 279
BssMI GATC 2 cut(s) 120, 873
BssNAI GTATAC 1 cut(s) 883
BssSI CACGAG 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 250
Bst1107I GTATAC 1 cut(s) 883
Bst2BI CACGAG 1 cut(s) 138
Bst2UI CCWGG 2 cut(s) 62, 612
Bst4CI ACNGT 4 cut(s) 300, 310, 551, 880
Bst6I CTCTTC 1 cut(s) 750
BstC8I GCNNGC 2 cut(s) 833, 904
BstDEI CTNAG 3 cut(s) 327, 498, 924
BstDSI CCRYGG 2 cut(s) 250, 279
BstF5I GGATG 2 cut(s) 146, 455
BstH2I RGCGCY 1 cut(s) 654
BstHHI GCGC 1 cut(s) 653
BstKTI GATC 2 cut(s) 123, 876
BstMAI GTCTC 3 cut(s) 141, 752, 802
BstMBI GATC 2 cut(s) 120, 873
BstMWI GCNNNNNNNGC 5 cut(s) 90, 518, 633, 650, 728
BstNI CCWGG 2 cut(s) 62, 612
BstNSI RCATGY 5 cut(s) 360, 631, 821, 860, 889
BstSCI CCNGG 4 cut(s) 60, 175, 610, 1006
BstSFI CTRYAG 2 cut(s) 124, 170
BstSLI GKGCMC 1 cut(s) 431
BstV1I GCAGC 2 cut(s) 184, 530
BstX2I RGATCY 1 cut(s) 120
BstXI CCANNNNNNTGG 3 cut(s) 286, 438, 822
BstYI RGATCY 1 cut(s) 120
BstZ17I GTATAC 1 cut(s) 883
BsuRI GGCC 4 cut(s) 240, 429, 442, 984
BtgI CCRYGG 2 cut(s) 250, 279
BtsCI GGATG 2 cut(s) 146, 455
BtsIMutI CAGTG 1 cut(s) 438
Cac8I GCNNGC 2 cut(s) 833, 904
CaiI CAGNNNCTG 1 cut(s) 156
CfoI GCGC 1 cut(s) 653
Cfr13I GGNCC 3 cut(s) 385, 427, 428
CseI GACGC 1 cut(s) 444
Csp6I GTAC 1 cut(s) 48
CviQI GTAC 1 cut(s) 48
DdeI CTNAG 3 cut(s) 327, 498, 924
DpnI GATC 2 cut(s) 122, 875
DpnII GATC 2 cut(s) 120, 873
DrdI GACNNNNNNGTC 1 cut(s) 794
DseDI GACNNNNNNGTC 1 cut(s) 794
EaeI YGGCCR 3 cut(s) 238, 440, 982
Eam1104I CTCTTC 1 cut(s) 750
EarI CTCTTC 1 cut(s) 750
Eco130I CCWWGG 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 431
Eco47I GGWCC 1 cut(s) 385
Eco57I CTGAAG 1 cut(s) 534
EcoRII CCWGG 2 cut(s) 60, 610
EcoT14I CCWWGG 1 cut(s) 250
EcoT22I ATGCAT 1 cut(s) 997
EcoT38I GRGCYC 1 cut(s) 431
ErhI CCWWGG 1 cut(s) 250
FalI AAGNNNNNCTT 2 cut(s) 387, 419
FaqI GGGAC 1 cut(s) 371
FauI CCCGC 1 cut(s) 658
FauNDI CATATG 1 cut(s) 793
FblI GTMKAC 1 cut(s) 882
Fnu4HI GCNGC 4 cut(s) 173, 202, 519, 907
FokI GGATG 2 cut(s) 133, 462
FriOI GRGCYC 1 cut(s) 431
Fsp4HI GCNGC 4 cut(s) 173, 202, 519, 907
FspBI CTAG 5 cut(s) 318, 341, 681, 723, 1029
GlaI GCGC 1 cut(s) 652
GluI GCNGC 4 cut(s) 173, 202, 519, 907
GsuI CTGGAG 1 cut(s) 633
HaeII RGCGCY 1 cut(s) 654
HaeIII GGCC 4 cut(s) 240, 429, 442, 984
HapII CCGG 2 cut(s) 176, 1007
HgaI GACGC 1 cut(s) 444
HhaI GCGC 1 cut(s) 653
Hin6I GCGC 1 cut(s) 651
HinP1I GCGC 1 cut(s) 651
HinfI GANTC 1 cut(s) 220
HpaII CCGG 2 cut(s) 176, 1007
HphI GGTGA 3 cut(s) 205, 563, 791
Hpy166II GTNNAC 2 cut(s) 659, 883
Hpy188I TCNGA 4 cut(s) 232, 330, 499, 962
Hpy188III TCNNGA 4 cut(s) 14, 186, 341, 863
Hpy8I GTNNAC 2 cut(s) 659, 883
HpyAV CCTTC 4 cut(s) 615, 701, 770, 940
HpyCH4III ACNGT 4 cut(s) 300, 310, 551, 880
HpyCH4V TGCA 8 cut(s) 68, 84, 106, 172, 627, 731, 995, 1000
HpyF10VI GCNNNNNNNGC 5 cut(s) 90, 518, 633, 650, 728
HpyF3I CTNAG 3 cut(s) 327, 498, 924
HspAI GCGC 1 cut(s) 651
Kzo9I GATC 2 cut(s) 120, 873
LmnI GCTCC 2 cut(s) 143, 682
Lsp1109I GCAGC 2 cut(s) 184, 530
LweI GCATC 2 cut(s) 155, 982
MaeI CTAG 5 cut(s) 318, 341, 681, 723, 1029
MaeIII GTNAC 1 cut(s) 161
MalI GATC 2 cut(s) 122, 875
MbiI CCGCTC 2 cut(s) 636, 665
MboI GATC 2 cut(s) 120, 873
MboII GAAGA 2 cut(s) 486, 767
MflI RGATCY 1 cut(s) 120
MhlI GDGCHC 1 cut(s) 431
MlsI TGGCCA 3 cut(s) 240, 442, 984
MluCI AATT 6 cut(s) 194, 234, 345, 490, 701, 839
MluNI TGGCCA 3 cut(s) 240, 442, 984
MlyI GAGTC 1 cut(s) 229
MnlI CCTC 3 cut(s) 221, 336, 821
Mox20I TGGCCA 3 cut(s) 240, 442, 984
Mph1103I ATGCAT 1 cut(s) 997
MscI TGGCCA 3 cut(s) 240, 442, 984
MseI TTAA 4 cut(s) 305, 312, 845, 1036
MslI CAYNNNNRTG 5 cut(s) 284, 355, 448, 820, 990
Msp20I TGGCCA 3 cut(s) 240, 442, 984
MspI CCGG 2 cut(s) 176, 1007
MspR9I CCNGG 4 cut(s) 62, 177, 612, 1008
Mva1269I GAATGC 1 cut(s) 405
MvaI CCWGG 2 cut(s) 62, 612
MwoI GCNNNNNNNGC 5 cut(s) 90, 518, 633, 650, 728
NciI CCSGG 2 cut(s) 177, 1008
NcoI CCATGG 1 cut(s) 250
NdeI CATATG 1 cut(s) 793
NdeII GATC 2 cut(s) 120, 873
NlaIV GGNNCC 2 cut(s) 387, 429
NsiI ATGCAT 1 cut(s) 997
NspI RCATGY 5 cut(s) 360, 631, 821, 860, 889
PciI ACATGT 3 cut(s) 817, 856, 885
PctI GAATGC 1 cut(s) 405
PfoI TCCNGGA 1 cut(s) 1006
PkrI GCNGC 4 cut(s) 174, 203, 520, 908
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
PscI ACATGT 3 cut(s) 817, 856, 885
Psp6I CCWGG 2 cut(s) 60, 610
PspGI CCWGG 2 cut(s) 60, 610
PspN4I GGNNCC 2 cut(s) 387, 429
PspOMI GGGCCC 1 cut(s) 427
PspPI GGNCC 3 cut(s) 385, 427, 428
PstI CTGCAG 1 cut(s) 174
PstNI CAGNNNCTG 1 cut(s) 156
PsuI RGATCY 1 cut(s) 120
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
RseI CAYNNNNRTG 5 cut(s) 284, 355, 448, 820, 990
SaqAI TTAA 4 cut(s) 305, 312, 845, 1036
SatI GCNGC 4 cut(s) 173, 202, 519, 907
Sau3AI GATC 2 cut(s) 120, 873
Sau96I GGNCC 3 cut(s) 385, 427, 428
SchI GAGTC 1 cut(s) 229
ScrFI CCNGG 4 cut(s) 62, 177, 612, 1008
SduI GDGCHC 1 cut(s) 431
SfaNI GCATC 2 cut(s) 155, 982
SfcI CTRYAG 2 cut(s) 124, 170
SinI GGWCC 1 cut(s) 385
SmiMI CAYNNNNRTG 5 cut(s) 284, 355, 448, 820, 990
SmlI CTYRAG 1 cut(s) 715
SmoI CTYRAG 1 cut(s) 715
Sse9I AATT 6 cut(s) 194, 234, 345, 490, 701, 839
SsiI CCGC 5 cut(s) 93, 201, 634, 665, 906
SspMI CTAG 5 cut(s) 318, 341, 681, 723, 1029
StyD4I CCNGG 4 cut(s) 60, 175, 610, 1006
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 4 cut(s) 300, 310, 551, 880
TaqI TCGA 1 cut(s) 57
TasI AATT 6 cut(s) 194, 234, 345, 490, 701, 839
TatI WGTACW 1 cut(s) 47
TauI GCSGC 2 cut(s) 204, 909
Tru1I TTAA 4 cut(s) 305, 312, 845, 1036
Tru9I TTAA 4 cut(s) 305, 312, 845, 1036
TscAI CASTG 1 cut(s) 438
TseI GCWGC 2 cut(s) 172, 518
TspDTI ATGAA 4 cut(s) 17, 339, 383, 909
TspGWI ACGGA 1 cut(s) 296
TspRI CASTG 1 cut(s) 438
VpaK11BI GGWCC 1 cut(s) 385
XapI RAATTY 2 cut(s) 194, 345
XbaI TCTAGA 1 cut(s) 340
XceI RCATGY 5 cut(s) 360, 631, 821, 860, 889
XcmI CCANNNNNNNNNTGG 1 cut(s) 248
XmiI GTMKAC 1 cut(s) 882
XspI CTAG 5 cut(s) 318, 341, 681, 723, 1029
Zsp2I ATGCAT 1 cut(s) 997
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.