FvH4_7g00070
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000240
Physical Location & Seq
Reverse (-)
662106 .. 662633
528 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g00070.t1

Sequence Viewer

Length: 528 bp
ATGATCAGATGTTCAAAGGTAGGCGTAGCTCTAGGGCAATCTGTCATGATTCCCTCAGCTAGTATAGTTGTTGAAAAGGTATTGGAGGATTTTGAGCATGATGAGGATGAGGATCCCAATCCCGTGGAAGATATTCAAGGTAGGGGGAAAAAGAGAACAACTATGGAAATGCAAACAAACGGTACTAAAGACAAATGTGTTTTAAAAGGGGCAAATGGGAAGAAAGGAAGGGTGGGAGGTGCGGCAAAATTGTCTAAGCAAATTGATCGCCTTGTTGAAGTAGTTGAGAGTAGGAGTACGGCTACATCAATTCCCACAAGTGCACAAGCAACTAGTATTCAGGAGGTCATGCAAGTTGTTGCAACTTTACCAGGAGCTAAAACTGGAACCAAGCTGTGGTGGTTTGCAACTGAGTTGTTTTGCTCTCAAGAAAAGCGAGAGATGTTCTCTATCATGACAGATGCTGATCTGAAGCTCCAGTTTTTGACTCTTAATAAAAAAAAGGCTGATCCTTCTTTTGTAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

176

Amino Acids

19.2

Weight (kDa)

8.4

Isoelectric Point (pI)

22.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 396
AciI CCGC 1 cut(s) 242
AclWI GGATC 3 cut(s) 107, 120, 503
AcuI CTGAAG 1 cut(s) 491
AfaI GTAC 2 cut(s) 184, 298
AfiI CCNNNNNNNGG 1 cut(s) 396
AgsI TTSAA 4 cut(s) 15, 74, 137, 278
AhlI ACTAGT 1 cut(s) 332
AjnI CCWGG 1 cut(s) 370
AluBI AGCT 5 cut(s) 29, 59, 377, 394, 475
AluI AGCT 5 cut(s) 29, 59, 377, 394, 475
Alw21I GWGCWC 1 cut(s) 325
Alw44I GTGCAC 1 cut(s) 321
AlwI GGATC 3 cut(s) 107, 120, 503
AlwNI CAGNNNCTG 1 cut(s) 464
ApaLI GTGCAC 1 cut(s) 321
Asp700I GAANNNNTTC 1 cut(s) 132
BaeGI GKGCMC 1 cut(s) 325
BamHI GGATCC 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 325
BbvCI CCTCAGC 1 cut(s) 55
BceAI ACGGC 1 cut(s) 315
BcgI CGANNNNNNTGC 2 cut(s) 248, 282
BciT130I CCWGG 1 cut(s) 372
BclI TGATCA 1 cut(s) 3
BcuI ACTAGT 1 cut(s) 332
BfaI CTAG 3 cut(s) 32, 60, 333
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
Bme1390I CCNGG 1 cut(s) 372
BmiI GGNNCC 2 cut(s) 114, 388
BmrFI CCNGG 1 cut(s) 372
BmsI GCATC 1 cut(s) 451
BplI GAGNNNNNCTC 2 cut(s) 431, 463
BpmI CTGGAG 1 cut(s) 461
Bpu10I CCTNAGC 1 cut(s) 55
BpuEI CTTGAG 1 cut(s) 411
BsaBI GATNNNNATC 3 cut(s) 111, 117, 465
BsaJI CCNNGG 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 396
Bse1I ACTGG 2 cut(s) 388, 478
Bse8I GATNNNNATC 3 cut(s) 111, 117, 465
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 112
BseJI GATNNNNATC 3 cut(s) 111, 117, 465
BseLI CCNNNNNNNGG 1 cut(s) 396
BseMII CTCAG 2 cut(s) 69, 402
BseNI ACTGG 2 cut(s) 388, 478
BseSI GKGCMC 1 cut(s) 325
BsiHKAI GWGCWC 1 cut(s) 325
BslI CCNNNNNNNGG 1 cut(s) 396
Bsp1286I GDGCHC 1 cut(s) 325
Bsp143I GATC 5 cut(s) 3, 112, 265, 466, 508
BspACI CCGC 1 cut(s) 242
BspCNI CTCAG 2 cut(s) 68, 403
BspHI TCATGA 2 cut(s) 45, 453
BspLI GGNNCC 2 cut(s) 114, 388
BspPI GGATC 3 cut(s) 107, 120, 503
BsrI ACTGG 2 cut(s) 388, 478
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 5 cut(s) 3, 112, 265, 466, 508
Bst2UI CCWGG 1 cut(s) 372
Bst4CI ACNGT 1 cut(s) 182
BstDEI CTNAG 3 cut(s) 55, 255, 411
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 112
BstKTI GATC 5 cut(s) 6, 115, 268, 469, 511
BstMBI GATC 5 cut(s) 3, 112, 265, 466, 508
BstNI CCWGG 1 cut(s) 372
BstSCI CCNGG 1 cut(s) 370
BstSLI GKGCMC 1 cut(s) 325
BstX2I RGATCY 1 cut(s) 112
BstXI CCANNNNNNTGG 1 cut(s) 124
BstYI RGATCY 1 cut(s) 112
BtgI CCRYGG 1 cut(s) 123
BtsCI GGATG 1 cut(s) 112
CaiI CAGNNNCTG 1 cut(s) 464
CciI TCATGA 2 cut(s) 45, 453
Csp6I GTAC 2 cut(s) 183, 297
CviAII CATG 4 cut(s) 46, 98, 349, 454
CviJI RGCY 7 cut(s) 29, 59, 302, 377, 394, 475, 506
CviKI_1 RGCY 7 cut(s) 29, 59, 302, 377, 394, 475, 506
CviQI GTAC 2 cut(s) 183, 297
DdeI CTNAG 3 cut(s) 55, 255, 411
DpnI GATC 5 cut(s) 5, 114, 267, 468, 510
DpnII GATC 5 cut(s) 3, 112, 265, 466, 508
DraI TTTAAA 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 491
EcoRII CCWGG 1 cut(s) 370
FaeI CATG 4 cut(s) 49, 101, 352, 457
FaiI YATR 6 cut(s) 47, 65, 99, 164, 350, 455
FatI CATG 4 cut(s) 45, 97, 348, 453
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 243
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 243
FspBI CTAG 3 cut(s) 32, 60, 333
GluI GCNGC 1 cut(s) 243
GsuI CTGGAG 1 cut(s) 461
Hin1II CATG 4 cut(s) 49, 101, 352, 457
HinfI GANTC 2 cut(s) 49, 487
Hpy166II GTNNAC 1 cut(s) 323
Hpy188I TCNGA 2 cut(s) 8, 471
Hpy188III TCNNGA 4 cut(s) 46, 341, 428, 454
Hpy8I GTNNAC 1 cut(s) 323
HpyAV CCTTC 2 cut(s) 222, 522
HpyCH4III ACNGT 1 cut(s) 182
HpyCH4V TGCA 5 cut(s) 172, 323, 352, 362, 407
HpyF3I CTNAG 3 cut(s) 55, 255, 411
Hsp92II CATG 4 cut(s) 49, 101, 352, 457
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 5 cut(s) 3, 112, 265, 466, 508
LmnI GCTCC 2 cut(s) 374, 480
LpnPI CCDG 5 cut(s) 326, 357, 369, 384, 491
LweI GCATC 1 cut(s) 451
MaeI CTAG 3 cut(s) 32, 60, 333
MalI GATC 5 cut(s) 5, 114, 267, 468, 510
MboI GATC 5 cut(s) 3, 112, 265, 466, 508
MboII GAAGA 2 cut(s) 140, 232
MflI RGATCY 1 cut(s) 112
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 3 cut(s) 248, 261, 309
MlyI GAGTC 1 cut(s) 481
MnlI CCTC 6 cut(s) 64, 79, 97, 103, 230, 337
MroXI GAANNNNTTC 1 cut(s) 132
MseI TTAA 2 cut(s) 203, 492
MspR9I CCNGG 1 cut(s) 372
MvaI CCWGG 1 cut(s) 372
NdeII GATC 5 cut(s) 3, 112, 265, 466, 508
NlaIII CATG 4 cut(s) 49, 101, 352, 457
NlaIV GGNNCC 2 cut(s) 114, 388
PagI TCATGA 2 cut(s) 45, 453
PdmI GAANNNNTTC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 49
PflMI CCANNNNNTGG 1 cut(s) 396
PkrI GCNGC 1 cut(s) 244
PleI GAGTC 1 cut(s) 481
PpsI GAGTC 1 cut(s) 481
Psp6I CCWGG 1 cut(s) 370
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 2 cut(s) 114, 388
PstNI CAGNNNCTG 1 cut(s) 464
PsuI RGATCY 1 cut(s) 112
RsaI GTAC 2 cut(s) 184, 298
RsaNI GTAC 2 cut(s) 183, 297
SaqAI TTAA 2 cut(s) 203, 492
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 5 cut(s) 3, 112, 265, 466, 508
SchI GAGTC 1 cut(s) 481
ScrFI CCNGG 1 cut(s) 372
SduI GDGCHC 1 cut(s) 325
SfaNI GCATC 1 cut(s) 451
SmlI CTYRAG 1 cut(s) 426
SmoI CTYRAG 1 cut(s) 426
SpeI ACTAGT 1 cut(s) 332
Sse9I AATT 3 cut(s) 248, 261, 309
SsiI CCGC 1 cut(s) 242
SspMI CTAG 3 cut(s) 32, 60, 333
StyD4I CCNGG 1 cut(s) 370
TaaI ACNGT 1 cut(s) 182
TasI AATT 3 cut(s) 248, 261, 309
TauI GCSGC 1 cut(s) 245
TfiI GAWTC 1 cut(s) 49
Tru1I TTAA 2 cut(s) 203, 492
Tru9I TTAA 2 cut(s) 203, 492
Van91I CCANNNNNTGG 1 cut(s) 396
VneI GTGCAC 1 cut(s) 321
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 3 cut(s) 32, 60, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.