Rroxscaffold_1G00051030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000240
Physical Location & Seq
Forward (+)
71525876 .. 71529846
3971 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00051030.1

Sequence Viewer

Length: 516 bp
ATGGGCTCACACACCTTCCTTCCTACCTATCAAAATAACAACTTGCAGAAAAAATATGATCAGTTCAGTCGTCATGCAAAGCATATGGAAATACCTACCGAACTTAGGCTTAGTTTGGGATTGATTTTGGAGGTACTGTTGCAAGCTTCGATTCACCGCCAAATTACCGCACACAGAGACGGAATCAATCCGCAGTATCGCAAGTTTCGGGACGTGGGAATTAGTCCCGAAATGATGGCTGTTTATGACAACATGTTCGGGGGTAGCACAGCCCTAGGTCACTTTGTCATGATTCCCTCGGCAACTATAGATATTGAAGAGGTTGTGGAGGATTCAGAGCATAATTTAATTTCTGGAGATGATGAAGAGGATTCGACCAAGATAATGAACGTAGAGGCAAAAAGAGAACAAATTTGGAGCGCCAAACGGAGGCCGATAAAGAAAAAAAGGAAAAGGAGTTATGGGAGGGCTAAAGGGGAAGAAAGAAAAGGTGGGAGGTGCGGCGAAATTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.6

Weight (kDa)

8.97

Isoelectric Point (pI)

56.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 157, 168, 191, 501
AcsI RAATTY 1 cut(s) 411
AfaI GTAC 1 cut(s) 135
AfiI CCNNNNNNNGG 2 cut(s) 105, 429
AflIII ACRYGT 1 cut(s) 252
AgsI TTSAA 1 cut(s) 317
AjiI CACGTC 1 cut(s) 214
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
Alw26I GTCTC 1 cut(s) 171
AoxI GGCC 1 cut(s) 431
ApoI RAATTY 1 cut(s) 411
ArsI GACNNNNNNTTYG 2 cut(s) 239, 271
AspA2I CCTAGG 1 cut(s) 274
AspLEI GCGC 1 cut(s) 422
AsuHPI GGTGA 1 cut(s) 146
AvrII CCTAGG 1 cut(s) 274
BanII GRGCYC 1 cut(s) 8
BccI CCATC 1 cut(s) 229
BclI TGATCA 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 171
BfaI CTAG 1 cut(s) 275
BfmI CTRYAG 1 cut(s) 306
BfoI RGCGCY 1 cut(s) 423
BisI GCNGC 1 cut(s) 502
BlnI CCTAGG 1 cut(s) 274
BlsI GCNGC 1 cut(s) 503
BmgBI CACGTC 1 cut(s) 214
BpmI CTGGAG 1 cut(s) 375
BsaJI CCNNGG 2 cut(s) 274, 297
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 429
BseDI CCNNGG 2 cut(s) 274, 297
BseLI CCNNNNNNNGG 2 cut(s) 105, 429
BshFI GGCC 1 cut(s) 433
BslFI GGGAC 2 cut(s) 210, 224
BslI CCNNNNNNNGG 2 cut(s) 105, 429
BsmAI GTCTC 1 cut(s) 171
BsmBI CGTCTC 1 cut(s) 171
BsmFI GGGAC 2 cut(s) 210, 224
BsnI GGCC 1 cut(s) 433
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 58
BspACI CCGC 4 cut(s) 157, 168, 191, 501
BspANI GGCC 1 cut(s) 433
BspHI TCATGA 1 cut(s) 288
BssECI CCNNGG 2 cut(s) 274, 297
BssMI GATC 1 cut(s) 58
BssT1I CCWWGG 1 cut(s) 274
Bst4CI ACNGT 1 cut(s) 138
Bst6I CTCTTC 2 cut(s) 312, 360
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 2 cut(s) 104, 110
BstH2I RGCGCY 1 cut(s) 423
BstHHI GCGC 1 cut(s) 422
BstKTI GATC 1 cut(s) 61
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 1 cut(s) 58
BstNSI RCATGY 1 cut(s) 256
BstSFI CTRYAG 1 cut(s) 306
BsuRI GGCC 1 cut(s) 433
BtrI CACGTC 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 144
CciI TCATGA 1 cut(s) 288
CfoI GCGC 1 cut(s) 422
Csp6I GTAC 1 cut(s) 134
CviAII CATG 3 cut(s) 74, 253, 289
CviJI RGCY 7 cut(s) 6, 109, 146, 239, 272, 433, 470
CviKI_1 RGCY 7 cut(s) 6, 109, 146, 239, 272, 433, 470
CviQI GTAC 1 cut(s) 134
DdeI CTNAG 2 cut(s) 104, 110
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
Eam1104I CTCTTC 2 cut(s) 312, 360
EarI CTCTTC 2 cut(s) 312, 360
Eco130I CCWWGG 1 cut(s) 274
Eco24I GRGCYC 1 cut(s) 8
EcoT14I CCWWGG 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 274
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 3 cut(s) 77, 256, 292
FaqI GGGAC 2 cut(s) 210, 224
FatI CATG 3 cut(s) 73, 252, 288
FauNDI CATATG 1 cut(s) 84
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 502
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 502
FspBI CTAG 1 cut(s) 275
GlaI GCGC 1 cut(s) 421
GluI GCNGC 1 cut(s) 502
GsuI CTGGAG 1 cut(s) 375
HaeII RGCGCY 1 cut(s) 423
HaeIII GGCC 1 cut(s) 433
HhaI GCGC 1 cut(s) 422
Hin1II CATG 3 cut(s) 77, 256, 292
Hin6I GCGC 1 cut(s) 420
HinP1I GCGC 1 cut(s) 420
HindIII AAGCTT 1 cut(s) 144
HinfI GANTC 5 cut(s) 151, 183, 292, 332, 371
HphI GGTGA 1 cut(s) 146
Hpy188I TCNGA 1 cut(s) 337
Hpy188III TCNNGA 4 cut(s) 209, 227, 289, 354
HpyAV CCTTC 2 cut(s) 25, 29
HpyCH4III ACNGT 1 cut(s) 138
HpyCH4IV ACGT 2 cut(s) 213, 390
HpyCH4V TGCA 3 cut(s) 46, 77, 142
HpyF3I CTNAG 2 cut(s) 104, 110
HpySE526I ACGT 2 cut(s) 213, 390
Hsp92II CATG 3 cut(s) 77, 256, 292
HspAI GCGC 1 cut(s) 420
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 1 cut(s) 58
LmnI GCTCC 1 cut(s) 417
LpnPI CCDG 1 cut(s) 339
MaeI CTAG 1 cut(s) 275
MaeII ACGT 2 cut(s) 213, 390
MaeIII GTNAC 1 cut(s) 278
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 3 cut(s) 329, 377, 491
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 6 cut(s) 162, 219, 343, 348, 411, 507
MnlI CCTC 9 cut(s) 124, 307, 313, 322, 361, 388, 423, 459, 489
MseI TTAA 1 cut(s) 347
NdeI CATATG 1 cut(s) 84
NdeII GATC 1 cut(s) 58
NlaIII CATG 3 cut(s) 77, 256, 292
NmeAIII GCCGAG 1 cut(s) 278
NmuCI GTSAC 1 cut(s) 278
NspI RCATGY 1 cut(s) 256
PagI TCATGA 1 cut(s) 288
PciI ACATGT 1 cut(s) 252
PfeI GAWTC 5 cut(s) 151, 183, 292, 332, 371
PkrI GCNGC 1 cut(s) 503
PscI ACATGT 1 cut(s) 252
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
SaqAI TTAA 1 cut(s) 347
SatI GCNGC 1 cut(s) 502
Sau3AI GATC 1 cut(s) 58
SduI GDGCHC 1 cut(s) 8
SfcI CTRYAG 1 cut(s) 306
Sse9I AATT 6 cut(s) 162, 219, 343, 348, 411, 507
SsiI CCGC 4 cut(s) 157, 168, 191, 501
SspMI CTAG 1 cut(s) 275
StyI CCWWGG 1 cut(s) 274
TaaI ACNGT 1 cut(s) 138
TaiI ACGT 2 cut(s) 216, 393
TaqI TCGA 2 cut(s) 149, 374
TasI AATT 6 cut(s) 162, 219, 343, 348, 411, 507
TauI GCSGC 1 cut(s) 504
TfiI GAWTC 5 cut(s) 151, 183, 292, 332, 371
Tru1I TTAA 1 cut(s) 347
Tru9I TTAA 1 cut(s) 347
TseFI GTSAC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 2 cut(s) 378, 401
TspGWI ACGGA 2 cut(s) 195, 442
XapI RAATTY 1 cut(s) 411
XceI RCATGY 1 cut(s) 256
XmaJI CCTAGG 1 cut(s) 274
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.