RchiOBHm_Chr4g0428601
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000240
Physical Location & Seq
Forward (+)
53611904 .. 53612917
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39746

Sequence Viewer

Length: 927 bp
ATGGCAAACAAGAGTGGAATACAGGAAAAAGGAAAGGCTACTTGGACTGATCATAATGTAGATGTCTTTTGTGACCTTTGTATCAAGGAGATTGAGAAAGGAAGTCGTCCAAGTACTCACCTCACACCAAAAGGTTATGAAAATTTGGGCATTAACTTCGCTAAAGAGACGGGACTTCAATATACTAAATCTCAATTCAAAAATAAGTGGGATTTATTAAGAGATCAATGGAAATTGTGGAAAGAACTAATTAGGAAGGAGACTGGTTTGGGGTGGAACCCCAAACTGAAAACTGTAAATGCACCTGATGAATGGTGGTGTAGTAAAATTCAGGACAATCCTGAATATGCCAAATTGCGTAAAAAGGGAATTAACCCTGAATTGGAAGAGAAGCTAGATATGATGTTCCAACAAGTTACTGCAAGTGGTGTTCATGCTTGGGCACCATCATCTGGTGTACTTCCACCTGATGATATAGAAGTTAACAATGTTGCAGTTCCATTAGATAGTGATGATGATTTGGCATGTCCCATTAAAGTCATTGCCAGTTCTTTAGGTAAGAGGAAAAGGACACCAACAAAACAAGTTAATGCAGGTACTGAGAAAAATAATAAAGCCAAAGGTATAGGATCAAGAAAGATTGGAGGTGCAGCTAAGTTAGTAATACAAATTGATCGGATGGTGGAATCAATTCAAACTAGGAGCGCTGTGACTTCAGTAATGAATAAATGTGTGTTGGGGACTTCTATTGCTGAAGTGATGAAATCAGTTTCATCTTTACTCGGGGCAGAACCAGGTAGTCCTTTGTGGTTTTTTGCAACTCAGTTATTTCTCAATGAAGAAAAGAGAGAGATGTTTGTCACCATAGAAGATGCAGATATCAAGATTCAGTGGCTTTATTATGAAATGGGAACTAGTGGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

308

Amino Acids

34.48

Weight (kDa)

8.77

Isoelectric Point (pI)

35.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 14 - 106 1.6e-20 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 584
AccB1I GGYRCC 1 cut(s) 442
AccB7I CCANNNNNTGG 1 cut(s) 452
AclWI GGATC 1 cut(s) 637
AcsI RAATTY 2 cut(s) 142, 327
AcuI CTGAAG 2 cut(s) 699, 774
AfaI GTAC 3 cut(s) 115, 459, 598
AfeI AGCGCT 1 cut(s) 706
AfiI CCNNNNNNNGG 2 cut(s) 382, 452
AgsI TTSAA 3 cut(s) 179, 199, 695
AhlI ACTAGT 1 cut(s) 914
AjnI CCWGG 1 cut(s) 793
AjuI GAANNNNNNNTTGG 2 cut(s) 25, 57
AluBI AGCT 2 cut(s) 394, 653
AluI AGCT 2 cut(s) 394, 653
Alw26I GTCTC 2 cut(s) 161, 254
AlwI GGATC 1 cut(s) 637
AlwNI CAGNNNCTG 1 cut(s) 599
Ama87I CYCGRG 1 cut(s) 782
Aor51HI AGCGCT 1 cut(s) 706
ApeKI GCWGC 1 cut(s) 650
ApoI RAATTY 2 cut(s) 142, 327
Asp700I GAANNNNTTC 1 cut(s) 690
AspLEI GCGC 1 cut(s) 707
AsuHPI GGTGA 2 cut(s) 110, 853
AvaI CYCGRG 1 cut(s) 782
BaeGI GKGCMC 1 cut(s) 445
BaeI ACNNNNGTAYC 2 cut(s) 64, 97
BanI GGYRCC 1 cut(s) 442
BbvI GCAGC 1 cut(s) 662
BccI CCATC 2 cut(s) 454, 673
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BciT130I CCWGG 1 cut(s) 795
BclI TGATCA 1 cut(s) 49
BcoDI GTCTC 2 cut(s) 161, 254
BcuI ACTAGT 1 cut(s) 914
BfaI CTAG 3 cut(s) 395, 699, 915
BfoI RGCGCY 1 cut(s) 708
BfuAI ACCTGC 1 cut(s) 584
BisI GCNGC 1 cut(s) 651
BlsI GCNGC 1 cut(s) 652
BmcAI AGTACT 1 cut(s) 115
Bme1390I CCNGG 1 cut(s) 795
BmeT110I CYCGRG 1 cut(s) 782
BmiI GGNNCC 2 cut(s) 278, 444
BmrFI CCNGG 1 cut(s) 795
BmsI GCATC 1 cut(s) 862
Bsc4I CCNNNNNNNGG 2 cut(s) 382, 452
Bse1I ACTGG 2 cut(s) 268, 546
Bse3DI GCAATG 1 cut(s) 540
BseBI CCWGG 1 cut(s) 795
BseGI GGATG 1 cut(s) 684
BseLI CCNNNNNNNGG 2 cut(s) 382, 452
BseMI GCAATG 1 cut(s) 540
BseMII CTCAG 2 cut(s) 591, 836
BseNI ACTGG 2 cut(s) 268, 546
BseSI GKGCMC 1 cut(s) 445
BseXI GCAGC 1 cut(s) 662
BsgI GTGCAG 1 cut(s) 669
BshNI GGYRCC 1 cut(s) 442
BsiHKCI CYCGRG 1 cut(s) 782
BslFI GGGAC 3 cut(s) 186, 513, 754
BslI CCNNNNNNNGG 2 cut(s) 382, 452
BsmAI GTCTC 2 cut(s) 161, 254
BsmBI CGTCTC 1 cut(s) 161
BsmFI GGGAC 3 cut(s) 186, 513, 754
BsoBI CYCGRG 1 cut(s) 782
Bsp1286I GDGCHC 1 cut(s) 445
Bsp143I GATC 4 cut(s) 49, 223, 629, 673
BspCNI CTCAG 2 cut(s) 592, 835
BspLI GGNNCC 2 cut(s) 278, 444
BspMI ACCTGC 1 cut(s) 584
BspPI GGATC 1 cut(s) 637
BspT107I GGYRCC 1 cut(s) 442
BsrDI GCAATG 1 cut(s) 540
BsrI ACTGG 2 cut(s) 268, 546
BssMI GATC 4 cut(s) 49, 223, 629, 673
Bst2UI CCWGG 1 cut(s) 795
Bst4CI ACNGT 1 cut(s) 295
Bst6I CTCTTC 1 cut(s) 381
BstDEI CTNAG 3 cut(s) 600, 654, 822
BstF5I GGATG 1 cut(s) 684
BstH2I RGCGCY 1 cut(s) 708
BstHHI GCGC 1 cut(s) 707
BstKTI GATC 4 cut(s) 52, 226, 632, 676
BstMAI GTCTC 2 cut(s) 161, 254
BstMBI GATC 4 cut(s) 49, 223, 629, 673
BstNI CCWGG 1 cut(s) 795
BstNSI RCATGY 1 cut(s) 528
BstSCI CCNGG 1 cut(s) 793
BstSLI GKGCMC 1 cut(s) 445
BstV1I GCAGC 1 cut(s) 662
BtsCI GGATG 1 cut(s) 684
BtsIMutI CAGTG 1 cut(s) 896
BveI ACCTGC 1 cut(s) 584
CaiI CAGNNNCTG 1 cut(s) 599
CfoI GCGC 1 cut(s) 707
CsiI ACCWGGT 1 cut(s) 793
Csp6I GTAC 3 cut(s) 114, 458, 597
CviAII CATG 2 cut(s) 434, 525
CviJI RGCY 5 cut(s) 38, 394, 617, 653, 895
CviKI_1 RGCY 5 cut(s) 38, 394, 617, 653, 895
CviQI GTAC 3 cut(s) 114, 458, 597
DdeI CTNAG 3 cut(s) 600, 654, 822
DpnI GATC 4 cut(s) 51, 225, 631, 675
DpnII GATC 4 cut(s) 49, 223, 629, 673
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
Eco32I GATATC 1 cut(s) 880
Eco47III AGCGCT 1 cut(s) 706
Eco57I CTGAAG 2 cut(s) 699, 774
Eco88I CYCGRG 1 cut(s) 782
EcoRII CCWGG 1 cut(s) 793
EcoRV GATATC 1 cut(s) 880
Esp3I CGTCTC 1 cut(s) 161
FaeI CATG 2 cut(s) 437, 528
FaqI GGGAC 3 cut(s) 186, 513, 754
FatI CATG 2 cut(s) 433, 524
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 1 cut(s) 651
FokI GGATG 1 cut(s) 691
Fsp4HI GCNGC 1 cut(s) 651
FspBI CTAG 3 cut(s) 395, 699, 915
GlaI GCGC 1 cut(s) 706
GluI GCNGC 1 cut(s) 651
HaeII RGCGCY 1 cut(s) 708
HhaI GCGC 1 cut(s) 707
Hin1II CATG 2 cut(s) 437, 528
Hin6I GCGC 1 cut(s) 705
HinP1I GCGC 1 cut(s) 705
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HinfI GANTC 2 cut(s) 686, 886
HpaI GTTAAC 1 cut(s) 484
HphI GGTGA 2 cut(s) 110, 853
Hpy166II GTNNAC 2 cut(s) 458, 484
Hpy188I TCNGA 1 cut(s) 678
Hpy188III TCNNGA 4 cut(s) 332, 341, 633, 883
Hpy8I GTNNAC 2 cut(s) 458, 484
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4V TGCA 7 cut(s) 302, 422, 494, 593, 650, 818, 875
HpyF3I CTNAG 3 cut(s) 600, 654, 822
Hsp92II CATG 2 cut(s) 437, 528
HspAI GCGC 1 cut(s) 705
Ksp22I TGATCA 1 cut(s) 49
KspAI GTTAAC 1 cut(s) 484
Kzo9I GATC 4 cut(s) 49, 223, 629, 673
LmnI GCTCC 1 cut(s) 702
Lsp1109I GCAGC 1 cut(s) 662
LweI GCATC 1 cut(s) 862
MabI ACCWGGT 1 cut(s) 793
MaeI CTAG 3 cut(s) 395, 699, 915
MaeIII GTNAC 4 cut(s) 71, 415, 709, 859
MalI GATC 4 cut(s) 51, 225, 631, 675
MboI GATC 4 cut(s) 49, 223, 629, 673
MboII GAAGA 3 cut(s) 398, 851, 881
MhlI GDGCHC 1 cut(s) 445
MmeI TCCRAC 1 cut(s) 433
MnlI CCTC 3 cut(s) 131, 555, 638
MroXI GAANNNNTTC 1 cut(s) 690
MseI TTAA 6 cut(s) 153, 218, 372, 483, 534, 588
MspR9I CCNGG 1 cut(s) 795
MvaI CCWGG 1 cut(s) 795
NdeII GATC 4 cut(s) 49, 223, 629, 673
NlaIII CATG 2 cut(s) 437, 528
NlaIV GGNNCC 2 cut(s) 278, 444
NmuCI GTSAC 3 cut(s) 71, 709, 859
NspI RCATGY 1 cut(s) 528
PdmI GAANNNNTTC 1 cut(s) 690
PfeI GAWTC 2 cut(s) 686, 886
PflMI CCANNNNNTGG 1 cut(s) 452
PkrI GCNGC 1 cut(s) 652
Psp6I CCWGG 1 cut(s) 793
PspGI CCWGG 1 cut(s) 793
PspN4I GGNNCC 2 cut(s) 278, 444
PstNI CAGNNNCTG 1 cut(s) 599
RsaI GTAC 3 cut(s) 115, 459, 598
RsaNI GTAC 3 cut(s) 114, 458, 597
SaqAI TTAA 6 cut(s) 153, 218, 372, 483, 534, 588
SatI GCNGC 1 cut(s) 651
Sau3AI GATC 4 cut(s) 49, 223, 629, 673
ScaI AGTACT 1 cut(s) 115
ScrFI CCNGG 1 cut(s) 795
SduI GDGCHC 1 cut(s) 445
SexAI ACCWGGT 1 cut(s) 793
SfaNI GCATC 1 cut(s) 862
SpeI ACTAGT 1 cut(s) 914
SspMI CTAG 3 cut(s) 395, 699, 915
StyD4I CCNGG 1 cut(s) 793
TaaI ACNGT 1 cut(s) 295
TatI WGTACW 2 cut(s) 113, 457
TfiI GAWTC 2 cut(s) 686, 886
Tru1I TTAA 6 cut(s) 153, 218, 372, 483, 534, 588
Tru9I TTAA 6 cut(s) 153, 218, 372, 483, 534, 588
TscAI CASTG 1 cut(s) 896
TseFI GTSAC 3 cut(s) 71, 709, 859
TseI GCWGC 1 cut(s) 650
Tsp45I GTSAC 3 cut(s) 71, 709, 859
TspDTI ATGAA 8 cut(s) 153, 324, 422, 737, 762, 776, 852, 918
TspRI CASTG 1 cut(s) 896
Van91I CCANNNNNTGG 1 cut(s) 452
XapI RAATTY 2 cut(s) 142, 327
XceI RCATGY 1 cut(s) 528
XmnI GAANNNNTTC 1 cut(s) 690
XspI CTAG 3 cut(s) 395, 699, 915
ZrmI AGTACT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.