Rmu_ssc0000388.1_g000013
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000388.1
OG0000240
Physical Location & Seq
Reverse (-)
55406 .. 56920
1515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000388.1_g000013.1.cds

Sequence Viewer

Length: 627 bp
atgaaagaattgaagggaaaagagaccggtcttgggtgggatcacaggcgtcaaactatagatgcatctgatgagtggtggtgcctcaagattgagaaaaacaaggaatatggaaagttaaagaaaaagggaattgcacccgattttgaagacaagttggataagatgttcatgggtatttcagccactggtcagcatgcatattcaccatcttctgcgctacctatccttagaagtccacaacaaggtaacaatgaggtgaaccttgaaggtagtggtgactctgaggacaatgatgatttggcccccactctgcctaaaagaaaaagaaatgagagagctgagaaagaaggtggaggcaccagtattaaggacatgatgaaggatgtcacctcattgcctggtatcgagcagggacagggatgtggaattaggtcagtagcagaacgatttcaacattctaatgaaactgtttctagatatttaggaaaagcactagatcatgtgtgtaaactaggtaaacgtataatgagaccttcggagaatgaatttaatggtgttgcaccggagataatgagggataacagatacatgcctcattttaaggtatttgtcatgcgttactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

208

Amino Acids

23.56

Weight (kDa)

8.65

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 81, 359
AclWI GGATC 1 cut(s) 48
AcsI RAATTY 1 cut(s) 548
AcyI GRCGYC 1 cut(s) 49
AfiI CCNNNNNNNGG 2 cut(s) 33, 245
AgeI ACCGGT 1 cut(s) 26
AgsI TTSAA 4 cut(s) 13, 149, 269, 455
AjnI CCWGG 1 cut(s) 400
AloI GAACNNNNNNTCC 2 cut(s) 152, 184
AluBI AGCT 1 cut(s) 341
AluI AGCT 1 cut(s) 341
Alw26I GTCTC 2 cut(s) 17, 526
AlwI GGATC 1 cut(s) 48
AlwNI CAGNNNCTG 1 cut(s) 188
AoxI GGCC 1 cut(s) 303
ApoI RAATTY 1 cut(s) 548
AsiGI ACCGGT 1 cut(s) 26
Asp700I GAANNNNTTC 1 cut(s) 450
AspLEI GCGC 1 cut(s) 220
AspS9I GGNCC 1 cut(s) 304
AsuHPI GGTGA 4 cut(s) 198, 271, 290, 382
BanI GGYRCC 2 cut(s) 81, 359
BbsI GAAGAC 1 cut(s) 156
BccI CCATC 1 cut(s) 217
BciT130I CCWGG 1 cut(s) 402
BcoDI GTCTC 2 cut(s) 17, 526
BfaI CTAG 4 cut(s) 477, 497, 515, 625
BfmI CTRYAG 1 cut(s) 57
Bme1390I CCNGG 1 cut(s) 402
BmgT120I GGNCC 1 cut(s) 304
BmiI GGNNCC 3 cut(s) 83, 306, 361
BmrFI CCNGG 1 cut(s) 402
BmsI GCATC 2 cut(s) 52, 74
BpiI GAAGAC 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 49
BsaI GGTCTC 2 cut(s) 17, 526
BsaWI WCCGGW 2 cut(s) 26, 565
Bsc4I CCNNNNNNNGG 2 cut(s) 33, 245
Bse118I RCCGGY 1 cut(s) 26
Bse1I ACTGG 2 cut(s) 193, 363
Bse3DI GCAATG 1 cut(s) 395
BseBI CCWGG 1 cut(s) 402
BseGI GGATG 2 cut(s) 391, 428
BseLI CCNNNNNNNGG 2 cut(s) 33, 245
BseMI GCAATG 1 cut(s) 395
BseMII CTCAG 2 cut(s) 276, 333
BseNI ACTGG 2 cut(s) 193, 363
BshFI GGCC 1 cut(s) 305
BshNI GGYRCC 2 cut(s) 81, 359
BshTI ACCGGT 1 cut(s) 26
BsiSI CCGG 2 cut(s) 27, 566
BslFI GGGAC 1 cut(s) 429
BslI CCNNNNNNNGG 2 cut(s) 33, 245
BsmAI GTCTC 2 cut(s) 17, 526
BsmFI GGGAC 1 cut(s) 429
BsnI GGCC 1 cut(s) 305
Bso31I GGTCTC 2 cut(s) 17, 526
Bsp143I GATC 2 cut(s) 40, 499
BspANI GGCC 1 cut(s) 305
BspCNI CTCAG 2 cut(s) 277, 334
BspLI GGNNCC 3 cut(s) 83, 306, 361
BspPI GGATC 1 cut(s) 48
BspT107I GGYRCC 2 cut(s) 81, 359
BspTNI GGTCTC 2 cut(s) 17, 526
BsrDI GCAATG 1 cut(s) 395
BsrFI RCCGGY 1 cut(s) 26
BsrI ACTGG 2 cut(s) 193, 363
BssAI RCCGGY 1 cut(s) 26
BssMI GATC 2 cut(s) 40, 499
BssNI GRCGYC 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 402
Bst4CI ACNGT 1 cut(s) 472
BstACI GRCGYC 1 cut(s) 49
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 3 cut(s) 230, 285, 342
BstF5I GGATG 2 cut(s) 391, 428
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 2 cut(s) 43, 502
BstMAI GTCTC 2 cut(s) 17, 526
BstMBI GATC 2 cut(s) 40, 499
BstNI CCWGG 1 cut(s) 402
BstNSI RCATGY 2 cut(s) 200, 595
BstSCI CCNGG 1 cut(s) 400
BstSFI CTRYAG 1 cut(s) 57
BstV2I GAAGAC 1 cut(s) 156
BsuRI GGCC 1 cut(s) 305
BtsCI GGATG 2 cut(s) 391, 428
BtsIMutI CAGTG 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 198
CaiI CAGNNNCTG 1 cut(s) 188
CfoI GCGC 1 cut(s) 220
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 304
CseI GACGC 1 cut(s) 38
CspAI ACCGGT 1 cut(s) 26
CviAII CATG 6 cut(s) 172, 197, 376, 503, 592, 616
CviJI RGCY 3 cut(s) 185, 305, 341
CviKI_1 RGCY 3 cut(s) 185, 305, 341
DdeI CTNAG 3 cut(s) 230, 285, 342
DpnI GATC 2 cut(s) 42, 501
DpnII GATC 2 cut(s) 40, 499
Eco31I GGTCTC 2 cut(s) 17, 526
EcoRII CCWGG 1 cut(s) 400
EcoT22I ATGCAT 2 cut(s) 67, 202
FaeI CATG 6 cut(s) 175, 200, 379, 506, 595, 619
FaqI GGGAC 1 cut(s) 429
FatI CATG 6 cut(s) 171, 196, 375, 502, 591, 615
FokI GGATG 2 cut(s) 398, 435
FspBI CTAG 4 cut(s) 477, 497, 515, 625
GlaI GCGC 1 cut(s) 219
HaeIII GGCC 1 cut(s) 305
HapII CCGG 2 cut(s) 27, 566
HgaI GACGC 1 cut(s) 38
HhaI GCGC 1 cut(s) 220
Hin1I GRCGYC 1 cut(s) 49
Hin1II CATG 6 cut(s) 175, 200, 379, 506, 595, 619
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HinfI GANTC 1 cut(s) 281
HpaII CCGG 2 cut(s) 27, 566
HphI GGTGA 4 cut(s) 198, 271, 290, 382
Hpy166II GTNNAC 4 cut(s) 239, 262, 512, 521
Hpy188I TCNGA 3 cut(s) 70, 286, 541
Hpy188III TCNNGA 2 cut(s) 88, 477
Hpy8I GTNNAC 4 cut(s) 239, 262, 512, 521
HpyAV CCTTC 5 cut(s) 7, 263, 344, 376, 546
HpyCH4III ACNGT 1 cut(s) 472
HpyCH4IV ACGT 1 cut(s) 523
HpyCH4V TGCA 4 cut(s) 65, 137, 200, 563
HpyF3I CTNAG 3 cut(s) 230, 285, 342
HpySE526I ACGT 1 cut(s) 523
Hsp92I GRCGYC 1 cut(s) 49
Hsp92II CATG 6 cut(s) 175, 200, 379, 506, 595, 619
HspAI GCGC 1 cut(s) 218
Kzo9I GATC 2 cut(s) 40, 499
LpnPI CCDG 9 cut(s) 31, 40, 174, 376, 387, 398, 404, 414, 579
LweI GCATC 2 cut(s) 52, 74
MaeI CTAG 4 cut(s) 477, 497, 515, 625
MaeII ACGT 1 cut(s) 523
MaeIII GTNAC 4 cut(s) 248, 278, 388, 620
MalI GATC 2 cut(s) 42, 501
MboI GATC 2 cut(s) 40, 499
MboII GAAGA 2 cut(s) 161, 204
MluCI AATT 4 cut(s) 8, 132, 429, 548
MlyI GAGTC 1 cut(s) 275
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 7 cut(s) 95, 250, 280, 350, 403, 570, 606
Mph1103I ATGCAT 2 cut(s) 67, 202
MroXI GAANNNNTTC 1 cut(s) 450
MseI TTAA 4 cut(s) 119, 369, 552, 603
MslI CAYNNNNRTG 1 cut(s) 462
MspI CCGG 2 cut(s) 27, 566
MspR9I CCNGG 1 cut(s) 402
MvaI CCWGG 1 cut(s) 402
NdeII GATC 2 cut(s) 40, 499
NlaIII CATG 6 cut(s) 175, 200, 379, 506, 595, 619
NlaIV GGNNCC 3 cut(s) 83, 306, 361
NmuCI GTSAC 2 cut(s) 278, 388
NsiI ATGCAT 2 cut(s) 67, 202
NspI RCATGY 2 cut(s) 200, 595
PaeI GCATGC 1 cut(s) 200
PdmI GAANNNNTTC 1 cut(s) 450
PinAI ACCGGT 1 cut(s) 26
PleI GAGTC 1 cut(s) 275
PpsI GAGTC 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 400
PspGI CCWGG 1 cut(s) 400
PspN4I GGNNCC 3 cut(s) 83, 306, 361
PspPI GGNCC 1 cut(s) 304
PstNI CAGNNNCTG 1 cut(s) 188
RseI CAYNNNNRTG 1 cut(s) 462
SaqAI TTAA 4 cut(s) 119, 369, 552, 603
Sau3AI GATC 2 cut(s) 40, 499
Sau96I GGNCC 1 cut(s) 304
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 1 cut(s) 402
SfaNI GCATC 2 cut(s) 52, 74
SfcI CTRYAG 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 462
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
SphI GCATGC 1 cut(s) 200
Sse9I AATT 4 cut(s) 8, 132, 429, 548
SspMI CTAG 4 cut(s) 477, 497, 515, 625
StyD4I CCNGG 1 cut(s) 400
TaaI ACNGT 1 cut(s) 472
TaiI ACGT 1 cut(s) 526
TaqI TCGA 1 cut(s) 408
TasI AATT 4 cut(s) 8, 132, 429, 548
Tru1I TTAA 4 cut(s) 119, 369, 552, 603
Tru9I TTAA 4 cut(s) 119, 369, 552, 603
TscAI CASTG 1 cut(s) 193
TseFI GTSAC 2 cut(s) 278, 388
Tsp45I GTSAC 2 cut(s) 278, 388
TspDTI ATGAA 5 cut(s) 17, 160, 395, 480, 561
TspRI CASTG 1 cut(s) 193
XapI RAATTY 1 cut(s) 548
XbaI TCTAGA 1 cut(s) 476
XceI RCATGY 2 cut(s) 200, 595
XmnI GAANNNNTTC 1 cut(s) 450
XspI CTAG 4 cut(s) 477, 497, 515, 625
Zsp2I ATGCAT 2 cut(s) 67, 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.