FvH4_4g07761
MYB Family

Myb SANT-like DNA-binding domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000240
Physical Location & Seq
Forward (+)
7258955 .. 7259577
623 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g07761.t1

Sequence Viewer

Length: 531 bp
ATGGGAAAAAAGAAAACTACAAGTACTGAAACTGAGGGAACTAGGAAAACAAAGGCCATATGGTCTGATGATATAGTAGCTATATTTTGTTATATAGCTCGTAAGGAAGTTGCAAAGGGAAACAGGCCAGGTACTCATTTTGATAAAAAGGTATGGGAAAATGTTGTCAAAGCCTTTAATGACTCAACCGGAAGAGATTATACTAAAGGCCAGTTGAAAAACAAATGGGAGTCACTTAAAAATGACTGGAAATTGTGGAGTTCTATTGGATGGGATCCTCTTAAGAAGACTGTCGATGCCTCTGCTGAATGGTGGAAAATGAAGATAGTTGTTGCTACAATGGCTCTTCATAACTACATAAGAAAGTATGCTCACCAAGATCATGATTTTGATGAAAGTGATGATTTCCAAAGTGAAGAGATTAGTGAAGATATGGAGGACAATGAACTTGAAGAACATGGGATGGGAAGACAAGAAATGAAGGTGTTAAGAAACACCATTGCACAAAGTTTAATGAATGTATCTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

177

Amino Acids

20.49

Weight (kDa)

6.23

Isoelectric Point (pI)

32.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 21 - 106 2.2e-17 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 269, 282
AfaI GTAC 2 cut(s) 25, 133
AflII CTTAAG 1 cut(s) 281
AgsI TTSAA 2 cut(s) 217, 452
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 2 cut(s) 80, 98
AluI AGCT 2 cut(s) 80, 98
AlwI GGATC 2 cut(s) 269, 282
AoxI GGCC 3 cut(s) 54, 125, 208
AsuHPI GGTGA 1 cut(s) 365
BamHI GGATCC 1 cut(s) 274
BarI GAAGNNNNNNTAC 2 cut(s) 184, 216
BbsI GAAGAC 2 cut(s) 293, 475
BccI CCATC 2 cut(s) 264, 457
BcgI CGANNNNNNTGC 2 cut(s) 284, 318
BciT130I CCWGG 1 cut(s) 129
BfaI CTAG 1 cut(s) 42
BfrI CTTAAG 1 cut(s) 281
BmcAI AGTACT 1 cut(s) 25
Bme1390I CCNGG 1 cut(s) 129
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 1 cut(s) 129
BmsI GCATC 1 cut(s) 286
BpiI GAAGAC 2 cut(s) 293, 475
BsaWI WCCGGW 1 cut(s) 188
Bse1I ACTGG 2 cut(s) 211, 251
Bse3DI GCAATG 1 cut(s) 498
BseBI CCWGG 1 cut(s) 129
BseGI GGATG 2 cut(s) 275, 468
BseMI GCAATG 1 cut(s) 498
BseMII CTCAG 1 cut(s) 24
BseNI ACTGG 2 cut(s) 211, 251
BshFI GGCC 3 cut(s) 56, 127, 210
BsiSI CCGG 1 cut(s) 189
BsnI GGCC 3 cut(s) 56, 127, 210
Bsp143I GATC 2 cut(s) 274, 379
BspANI GGCC 3 cut(s) 56, 127, 210
BspCNI CTCAG 1 cut(s) 25
BspHI TCATGA 1 cut(s) 382
BspLI GGNNCC 1 cut(s) 276
BspPI GGATC 2 cut(s) 269, 282
BspQI GCTCTTC 1 cut(s) 351
BspTI CTTAAG 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 498
BsrI ACTGG 2 cut(s) 211, 251
BssMI GATC 2 cut(s) 274, 379
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 292
Bst6I CTCTTC 3 cut(s) 187, 351, 411
BstAFI CTTAAG 1 cut(s) 281
BstDEI CTNAG 1 cut(s) 33
BstF5I GGATG 2 cut(s) 275, 468
BstKTI GATC 2 cut(s) 277, 382
BstMBI GATC 2 cut(s) 274, 379
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstNI CCWGG 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 127
BstV2I GAAGAC 2 cut(s) 293, 475
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BsuRI GGCC 3 cut(s) 56, 127, 210
BtsCI GGATG 2 cut(s) 275, 468
CciI TCATGA 1 cut(s) 382
Csp6I GTAC 2 cut(s) 24, 132
CviAII CATG 2 cut(s) 383, 458
CviJI RGCY 7 cut(s) 56, 80, 98, 127, 173, 210, 344
CviKI_1 RGCY 7 cut(s) 56, 80, 98, 127, 173, 210, 344
CviQI GTAC 2 cut(s) 24, 132
DdeI CTNAG 1 cut(s) 33
DpnI GATC 2 cut(s) 276, 381
DpnII GATC 2 cut(s) 274, 379
Eam1104I CTCTTC 3 cut(s) 187, 351, 411
EarI CTCTTC 3 cut(s) 187, 351, 411
EcoRII CCWGG 1 cut(s) 127
FaeI CATG 2 cut(s) 386, 461
FatI CATG 2 cut(s) 382, 457
FauNDI CATATG 1 cut(s) 59
FokI GGATG 2 cut(s) 282, 475
FspBI CTAG 1 cut(s) 42
HaeIII GGCC 3 cut(s) 56, 127, 210
HapII CCGG 1 cut(s) 189
Hin1II CATG 2 cut(s) 386, 461
HinfI GANTC 2 cut(s) 182, 230
HpaII CCGG 1 cut(s) 189
HphI GGTGA 1 cut(s) 365
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 1 cut(s) 383
HpyAV CCTTC 1 cut(s) 475
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4V TGCA 2 cut(s) 113, 503
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
HpyF3I CTNAG 1 cut(s) 33
Hsp92II CATG 2 cut(s) 386, 461
Kzo9I GATC 2 cut(s) 274, 379
LguI GCTCTTC 1 cut(s) 351
LpnPI CCDG 6 cut(s) 109, 114, 141, 202, 224, 232
LweI GCATC 1 cut(s) 286
MaeI CTAG 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 231
MalI GATC 2 cut(s) 276, 381
MboI GATC 2 cut(s) 274, 379
MboII GAAGA 8 cut(s) 204, 298, 334, 338, 428, 440, 464, 480
MflI RGATCY 1 cut(s) 274
MluCI AATT 1 cut(s) 251
MlyI GAGTC 2 cut(s) 176, 239
MnlI CCTC 4 cut(s) 28, 288, 310, 430
MseI TTAA 5 cut(s) 177, 237, 282, 488, 512
MspCI CTTAAG 1 cut(s) 281
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 1 cut(s) 129
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 341
NdeI CATATG 1 cut(s) 59
NdeII GATC 2 cut(s) 274, 379
NlaIII CATG 2 cut(s) 386, 461
NlaIV GGNNCC 1 cut(s) 276
NmuCI GTSAC 1 cut(s) 231
PagI TCATGA 1 cut(s) 382
PciSI GCTCTTC 1 cut(s) 351
PleI GAGTC 2 cut(s) 176, 238
PpsI GAGTC 2 cut(s) 176, 238
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 276
PsuI RGATCY 1 cut(s) 274
RsaI GTAC 2 cut(s) 25, 133
RsaNI GTAC 2 cut(s) 24, 132
SapI GCTCTTC 1 cut(s) 351
SaqAI TTAA 5 cut(s) 177, 237, 282, 488, 512
Sau3AI GATC 2 cut(s) 274, 379
ScaI AGTACT 1 cut(s) 25
SchI GAGTC 2 cut(s) 176, 239
ScrFI CCNGG 1 cut(s) 129
SetI ASST 5 cut(s) 82, 100, 133, 153, 486
SfaNI GCATC 1 cut(s) 286
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 1 cut(s) 251
SspMI CTAG 1 cut(s) 42
StyD4I CCNGG 1 cut(s) 127
TaaI ACNGT 1 cut(s) 292
TaqI TCGA 1 cut(s) 294
TasI AATT 1 cut(s) 251
TatI WGTACW 1 cut(s) 23
Tru1I TTAA 5 cut(s) 177, 237, 282, 488, 512
Tru9I TTAA 5 cut(s) 177, 237, 282, 488, 512
TseFI GTSAC 1 cut(s) 231
Tsp45I GTSAC 1 cut(s) 231
TspDTI ATGAA 6 cut(s) 335, 338, 408, 459, 494, 530
Vha464I CTTAAG 1 cut(s) 281
XspI CTAG 1 cut(s) 42
ZrmI AGTACT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.