Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000240

Physical Location & Seq

Genomic Coordinates Reverse (-)

41897947 .. 41902360

Gene Structure 4414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008888

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGGAAGGAAGAATACTAATGAAATTGGGGGAAGTGGATCACAAGTTAAAGCTGTATGGAATGAGTATAATGTATCCAAATTTTGTGATATGTGCATCAAGTTGGTGGATGCTGGACGTCGTCCTAATACCCATTTTGACATAGAAGGATGGGAGAGTTTGGTCAATCCCGAATATGCAAAACTGCGTAAAAAAGGTCTTAATCCTAAATTGGAGGAGAAGCTAGATAGAATGTTTTCAAACATTATAGCCACTGGTGAACATGCTTGGGCACCTTCTTGTGGGAACCTTTCATCTCCAAAATCAGACATATGCAAGGATGATGTCATTCCACTTGAAGGCAGTGATGATTCGGTGGATTTTACTCCAATAGAAAGAAGTGGGGAGTTCACTATAACTCAGGATGTAATAAACCATTCAGAAGACTCTAATGGAAAGCTACCTCACGAAGCTTGTCAAAGCAATGAGAAAGTTGCTATATCCCTGGGCCATGATCGTAAGATACAGCTATTAAGACTAAATAAGGTGCTTCATAACTATACTGTTGATCTCCCAAAGAAACATGAAAGAGGAGAGCAATCATCTCTTCATTTTGATCATCTTGGAGAGGAGGCACACCACAACTATGTTGCTATGGCAGTAGAAAATGCCACTAAGCTTTTTACTAATCCTACCACCAACCAACCCAATGTTGCAGAATTAATACTGGCAGGATCAGTGGACTTCAAAATTGTGCTTAGTGGACCAGACAAGTTTGATCAACGTCTGCAGGCCAAAATACTGAATGTGGTGAGAATTCGCTGTGGAGGAGAGAATGGTTTCGATCAGACTATTGACTTACTAACGAAAATTCCATCCAATGAAATTTGTGCAGAAGAAATGGTTAATGGAAAAAAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

eRF1_1 eRF1_2 eRF1_3

Protein Analysis

301

Amino Acids

33.42

Weight (kDa)

5.79

Isoelectric Point (pI)

33.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eRF1_2	PF03464	175 - 280	7.1e-18	eRF1 domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11300
fragaria_vesca	FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica	MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica	Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis	pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis	RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata	RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora	Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa	Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha	Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana	Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	121
AccB1I	GGYRCC	1 cut(s)	271
AclWI	GGATC	2 cut(s)	46, 721
AcsI	RAATTY	4 cut(s)	80, 795, 849, 864
AcyI	GRCGYC	1 cut(s)	118
AfiI	CCNNNNNNNGG	2 cut(s)	281, 338
AgsI	TTSAA	3 cut(s)	240, 338, 727
AjnI	CCWGG	1 cut(s)	483
AluBI	AGCT	6 cut(s)	53, 223, 439, 452, 508, 658
AluI	AGCT	6 cut(s)	53, 223, 439, 452, 508, 658
AlwI	GGATC	2 cut(s)	46, 721
AoxI	GGCC	2 cut(s)	487, 771
ApoI	RAATTY	4 cut(s)	80, 795, 849, 864
AseI	ATTAAT	1 cut(s)	701
Asp700I	GAANNNNTTC	2 cut(s)	235, 818
AspS9I	GGNCC	2 cut(s)	487, 743
AsuHPI	GGTGA	2 cut(s)	269, 802
AvaII	GGWCC	1 cut(s)	743
BaeGI	GKGCMC	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	271
BarI	GAAGNNNNNNTAC	1 cut(s)	30
BbsI	GAAGAC	1 cut(s)	429
BccI	CCATC	2 cut(s)	144, 862
BciT130I	CCWGG	1 cut(s)	485
BciVI	GTATCC	1 cut(s)	85
BclI	TGATCA	2 cut(s)	595, 757
BfaI	CTAG	1 cut(s)	224
BfmI	CTRYAG	1 cut(s)	767
BfuI	GTATCC	1 cut(s)	85
Bme1390I	CCNGG	1 cut(s)	485
Bme18I	GGWCC	1 cut(s)	743
BmgT120I	GGNCC	2 cut(s)	487, 743
BmiI	GGNNCC	2 cut(s)	273, 287
BmrFI	CCNGG	1 cut(s)	485
BmsI	GCATC	2 cut(s)	100, 105
BpiI	GAAGAC	1 cut(s)	429
BsaHI	GRCGYC	1 cut(s)	118
BsaJI	CCNNGG	2 cut(s)	483, 484
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 338
Bse1I	ACTGG	2 cut(s)	259, 711
Bse3DI	GCAATG	1 cut(s)	469
BseBI	CCWGG	1 cut(s)	485
BseDI	CCNNGG	2 cut(s)	483, 484
BseGI	GGATG	5 cut(s)	115, 155, 325, 409, 854
BseLI	CCNNNNNNNGG	2 cut(s)	281, 338
BseMI	GCAATG	1 cut(s)	469
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	2 cut(s)	259, 711
BseRI	GAGGAG	4 cut(s)	230, 585, 623, 822
BseSI	GKGCMC	1 cut(s)	274
BsgI	GTGCAG	1 cut(s)	891
BshFI	GGCC	2 cut(s)	489, 773
BshNI	GGYRCC	1 cut(s)	271
BslI	CCNNNNNNNGG	2 cut(s)	281, 338
BsnI	GGCC	2 cut(s)	489, 773
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp143I	GATC	7 cut(s)	38, 493, 547, 595, 713, 757, 823
BspANI	GGCC	2 cut(s)	489, 773
BspCNI	CTCAG	1 cut(s)	412
BspLI	GGNNCC	2 cut(s)	273, 287
BspMAI	CTGCAG	1 cut(s)	771
BspPI	GGATC	2 cut(s)	46, 721
BspT107I	GGYRCC	1 cut(s)	271
BsrDI	GCAATG	1 cut(s)	469
BsrI	ACTGG	2 cut(s)	259, 711
BssECI	CCNNGG	2 cut(s)	483, 484
BssMI	GATC	7 cut(s)	38, 493, 547, 595, 713, 757, 823
BssNI	GRCGYC	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	485
Bst4CI	ACNGT	1 cut(s)	544
Bst6I	CTCTTC	1 cut(s)	591
BstACI	GRCGYC	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	771
BstDEI	CTNAG	3 cut(s)	399, 654, 737
BstF5I	GGATG	5 cut(s)	115, 155, 325, 409, 854
BstKTI	GATC	7 cut(s)	41, 496, 550, 598, 716, 760, 826
BstMBI	GATC	7 cut(s)	38, 493, 547, 595, 713, 757, 823
BstNI	CCWGG	1 cut(s)	485
BstNSI	RCATGY	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	483
BstSFI	CTRYAG	1 cut(s)	767
BstSLI	GKGCMC	1 cut(s)	274
BstV2I	GAAGAC	1 cut(s)	429
BsuI	GTATCC	1 cut(s)	85
BsuRI	GGCC	2 cut(s)	489, 773
BtsCI	GGATG	5 cut(s)	115, 155, 325, 409, 854
BtsI	GCAGTG	1 cut(s)	349
BtsIMutI	CAGTG	3 cut(s)	252, 349, 723
Cac8I	GCNNGC	1 cut(s)	771
Cfr13I	GGNCC	2 cut(s)	487, 743
CviAII	CATG	3 cut(s)	263, 491, 563
CviJI	RGCY	9 cut(s)	53, 223, 251, 439, 452, 489, 508, 658, 773
CviKI_1	RGCY	9 cut(s)	53, 223, 251, 439, 452, 489, 508, 658, 773
DdeI	CTNAG	3 cut(s)	399, 654, 737
DpnI	GATC	7 cut(s)	40, 495, 549, 597, 715, 759, 825
DpnII	GATC	7 cut(s)	38, 493, 547, 595, 713, 757, 823
Eam1104I	CTCTTC	1 cut(s)	591
EarI	CTCTTC	1 cut(s)	591
Eco47I	GGWCC	1 cut(s)	743
EcoRI	GAATTC	1 cut(s)	795
EcoRII	CCWGG	1 cut(s)	483
FaeI	CATG	3 cut(s)	266, 494, 566
FatI	CATG	3 cut(s)	262, 490, 562
FauNDI	CATATG	1 cut(s)	311
FbaI	TGATCA	2 cut(s)	595, 757
FokI	GGATG	5 cut(s)	122, 162, 332, 416, 841
FspBI	CTAG	1 cut(s)	224
HaeIII	GGCC	2 cut(s)	489, 773
Hin1I	GRCGYC	1 cut(s)	118
Hin1II	CATG	3 cut(s)	266, 494, 566
HindIII	AAGCTT	2 cut(s)	450, 656
HinfI	GANTC	2 cut(s)	350, 425
HphI	GGTGA	2 cut(s)	269, 802
Hpy166II	GTNNAC	4 cut(s)	260, 390, 721, 743
Hpy188I	TCNGA	3 cut(s)	307, 421, 828
Hpy188III	TCNNGA	3 cut(s)	170, 401, 446
Hpy8I	GTNNAC	4 cut(s)	260, 390, 721, 743
Hpy99I	CGWCG	1 cut(s)	123
HpyAV	CCTTC	3 cut(s)	140, 285, 332
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4IV	ACGT	2 cut(s)	118, 763
HpyCH4V	TGCA	6 cut(s)	96, 179, 315, 695, 769, 872
HpyF3I	CTNAG	3 cut(s)	399, 654, 737
HpySE526I	ACGT	2 cut(s)	118, 763
Hsp92I	GRCGYC	1 cut(s)	118
Hsp92II	CATG	3 cut(s)	266, 494, 566
Ksp22I	TGATCA	2 cut(s)	595, 757
Kzo9I	GATC	7 cut(s)	38, 493, 547, 595, 713, 757, 823
LpnPI	CCDG	9 cut(s)	99, 240, 386, 470, 497, 692, 696, 755, 759
LweI	GCATC	2 cut(s)	100, 105
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	2 cut(s)	118, 763
MalI	GATC	7 cut(s)	40, 495, 549, 597, 715, 759, 825
MboI	GATC	7 cut(s)	38, 493, 547, 595, 713, 757, 823
MboII	GAAGA	4 cut(s)	22, 434, 578, 887
MhlI	GDGCHC	1 cut(s)	274
MluCI	AATT	8 cut(s)	24, 80, 209, 698, 729, 795, 849, 864
MlyI	GAGTC	1 cut(s)	419
MnlI	CCTC	6 cut(s)	208, 453, 563, 601, 604, 800
MroXI	GAANNNNTTC	2 cut(s)	235, 818
MseI	TTAA	5 cut(s)	48, 201, 512, 701, 885
MslI	CAYNNNNRTG	1 cut(s)	624
MspR9I	CCNGG	1 cut(s)	485
MvaI	CCWGG	1 cut(s)	485
NdeI	CATATG	1 cut(s)	311
NdeII	GATC	7 cut(s)	38, 493, 547, 595, 713, 757, 823
NlaIII	CATG	3 cut(s)	266, 494, 566
NlaIV	GGNNCC	2 cut(s)	273, 287
NspI	RCATGY	1 cut(s)	266
PasI	CCCWGGG	1 cut(s)	484
PdmI	GAANNNNTTC	2 cut(s)	235, 818
PfeI	GAWTC	1 cut(s)	350
PflFI	GACNNNGTC	1 cut(s)	120
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
PshBI	ATTAAT	1 cut(s)	701
Psp6I	CCWGG	1 cut(s)	483
PspGI	CCWGG	1 cut(s)	483
PspN4I	GGNNCC	2 cut(s)	273, 287
PspPI	GGNCC	2 cut(s)	487, 743
PstI	CTGCAG	1 cut(s)	771
PsyI	GACNNNGTC	1 cut(s)	120
RseI	CAYNNNNRTG	1 cut(s)	624
SaqAI	TTAA	5 cut(s)	48, 201, 512, 701, 885
Sau3AI	GATC	7 cut(s)	38, 493, 547, 595, 713, 757, 823
Sau96I	GGNCC	2 cut(s)	487, 743
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	1 cut(s)	485
SduI	GDGCHC	1 cut(s)	274
SfaNI	GCATC	2 cut(s)	100, 105
SfcI	CTRYAG	1 cut(s)	767
SinI	GGWCC	1 cut(s)	743
SmiMI	CAYNNNNRTG	1 cut(s)	624
Sse9I	AATT	8 cut(s)	24, 80, 209, 698, 729, 795, 849, 864
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	483
TaaI	ACNGT	1 cut(s)	544
TaiI	ACGT	2 cut(s)	121, 766
TaqI	TCGA	1 cut(s)	822
TasI	AATT	8 cut(s)	24, 80, 209, 698, 729, 795, 849, 864
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	5 cut(s)	48, 201, 512, 701, 885
Tru9I	TTAA	5 cut(s)	48, 201, 512, 701, 885
TscAI	CASTG	3 cut(s)	259, 349, 723
TspDTI	ATGAA	6 cut(s)	36, 282, 521, 578, 579, 876
TspRI	CASTG	3 cut(s)	259, 349, 723
Tth111I	GACNNNGTC	1 cut(s)	120
VpaK11BI	GGWCC	1 cut(s)	743
VspI	ATTAAT	1 cut(s)	701
XapI	RAATTY	4 cut(s)	80, 795, 849, 864
XceI	RCATGY	1 cut(s)	266
XmnI	GAANNNNTTC	2 cut(s)	235, 818
XspI	CTAG	1 cut(s)	224
ZraI	GACGTC	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.