Rmu_sc0002137.1_g000011
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002137.1
OG0000240
Physical Location & Seq
Forward (+)
48057 .. 50601
2545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002137.1_g000011.1.cds

Sequence Viewer

Length: 594 bp
atggctgctaaagaagtggccaaggaaaacagacctggtacacattttgataaaaagggatggtcaaatgttatcatggcctttaaggagttaaccggaagggattacgataaaagccaactgaaaaataagtgggattcacttaaaaatgattggaaattatggagttcacttttgcataaggaaactggtattggatgggatccagctaggaaaactgtcgacgcacctgctgaatggtgggaatccaaaattcagatcaatctagagtatcgcaagtttcgggatgtgggaattagtcctgaaatgatggttgtttatgacaacatgttcaggggtagcatagccctaggtcactttgtcatgattccctcagctactatagatattgaagaggttgtggaggattcagagcataatttaatttctggagatgatgaagaggattttgaccaagataatgaacgtagaggcaaaaagagaacaaatttggagcgccaaacagaggctgataaagaaaaaaaaaggaaaaggagttatgggagggccaaaggggaagaaagaaaaggtgggaggtgcggcgaaattgtctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

197

Amino Acids

22.91

Weight (kDa)

6.47

Isoelectric Point (pI)

41.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 238
Acc36I ACCTGC 1 cut(s) 238
AccI GTMKAC 1 cut(s) 222
AciI CCGC 1 cut(s) 579
AclWI GGATC 2 cut(s) 197, 210
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 2 cut(s) 252, 487
AfaI GTAC 1 cut(s) 40
AfiI CCNNNNNNNGG 1 cut(s) 505
AflIII ACRYGT 1 cut(s) 327
AgsI TTSAA 1 cut(s) 392
AjnI CCWGG 1 cut(s) 34
AjuI GAANNNNNNNTTGG 2 cut(s) 177, 209
AluBI AGCT 2 cut(s) 209, 377
AluI AGCT 2 cut(s) 209, 377
AlwI GGATC 2 cut(s) 197, 210
AlwNI CAGNNNCTG 1 cut(s) 509
AoxI GGCC 3 cut(s) 18, 78, 546
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 252, 487
AspA2I CCTAGG 1 cut(s) 349
AspLEI GCGC 1 cut(s) 498
AspS9I GGNCC 1 cut(s) 546
AvrII CCTAGG 1 cut(s) 349
BalI TGGCCA 1 cut(s) 20
BamHI GGATCC 1 cut(s) 202
BbvCI CCTCAGC 1 cut(s) 373
BccI CCATC 3 cut(s) 54, 192, 304
BcgI CGANNNNNNTGC 2 cut(s) 212, 246
BciT130I CCWGG 1 cut(s) 36
BfaI CTAG 3 cut(s) 210, 266, 350
BfmI CTRYAG 1 cut(s) 381
BfoI RGCGCY 1 cut(s) 499
BfuAI ACCTGC 1 cut(s) 238
BisI GCNGC 2 cut(s) 6, 580
BlnI CCTAGG 1 cut(s) 349
BlsI GCNGC 2 cut(s) 7, 581
Bme1390I CCNGG 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 546
BmiI GGNNCC 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 36
BpmI CTGGAG 1 cut(s) 450
Bpu10I CCTNAGC 1 cut(s) 373
BsaJI CCNNGG 2 cut(s) 21, 349
BsaWI WCCGGW 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 505
Bse1I ACTGG 1 cut(s) 193
BseBI CCWGG 1 cut(s) 36
BseDI CCNNGG 2 cut(s) 21, 349
BseGI GGATG 3 cut(s) 65, 203, 292
BseLI CCNNNNNNNGG 1 cut(s) 505
BseMII CTCAG 1 cut(s) 387
BseNI ACTGG 1 cut(s) 193
BshFI GGCC 3 cut(s) 20, 80, 548
BsiSI CCGG 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 505
BsnI GGCC 3 cut(s) 20, 80, 548
Bsp143I GATC 2 cut(s) 202, 258
BspACI CCGC 1 cut(s) 579
BspANI GGCC 3 cut(s) 20, 80, 548
BspCNI CTCAG 1 cut(s) 386
BspHI TCATGA 1 cut(s) 363
BspLI GGNNCC 1 cut(s) 204
BspMI ACCTGC 1 cut(s) 238
BspPI GGATC 2 cut(s) 197, 210
BsrI ACTGG 1 cut(s) 193
BssECI CCNNGG 2 cut(s) 21, 349
BssMI GATC 2 cut(s) 202, 258
BssT1I CCWWGG 2 cut(s) 21, 349
Bst2UI CCWGG 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 220
Bst6I CTCTTC 2 cut(s) 387, 435
BstDEI CTNAG 1 cut(s) 373
BstF5I GGATG 3 cut(s) 65, 203, 292
BstH2I RGCGCY 1 cut(s) 499
BstHHI GCGC 1 cut(s) 498
BstKTI GATC 2 cut(s) 205, 261
BstMBI GATC 2 cut(s) 202, 258
BstNI CCWGG 1 cut(s) 36
BstNSI RCATGY 1 cut(s) 331
BstSCI CCNGG 1 cut(s) 34
BstSFI CTRYAG 1 cut(s) 381
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
BsuRI GGCC 3 cut(s) 20, 80, 548
BtsCI GGATG 3 cut(s) 65, 203, 292
BveI ACCTGC 1 cut(s) 238
CaiI CAGNNNCTG 1 cut(s) 509
CciI TCATGA 1 cut(s) 363
CfoI GCGC 1 cut(s) 498
Cfr13I GGNCC 1 cut(s) 546
CseI GACGC 1 cut(s) 233
CsiI ACCWGGT 1 cut(s) 34
Csp6I GTAC 1 cut(s) 39
CviAII CATG 3 cut(s) 76, 328, 364
CviJI RGCY 9 cut(s) 5, 20, 80, 117, 209, 347, 377, 509, 548
CviKI_1 RGCY 9 cut(s) 5, 20, 80, 117, 209, 347, 377, 509, 548
CviQI GTAC 1 cut(s) 39
DdeI CTNAG 1 cut(s) 373
DpnI GATC 2 cut(s) 204, 260
DpnII GATC 2 cut(s) 202, 258
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 2 cut(s) 387, 435
EarI CTCTTC 2 cut(s) 387, 435
Eco130I CCWWGG 2 cut(s) 21, 349
EcoRII CCWGG 1 cut(s) 34
EcoT14I CCWWGG 2 cut(s) 21, 349
ErhI CCWWGG 2 cut(s) 21, 349
FaeI CATG 3 cut(s) 79, 331, 367
FatI CATG 3 cut(s) 75, 327, 363
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 2 cut(s) 6, 580
FokI GGATG 3 cut(s) 72, 210, 299
Fsp4HI GCNGC 2 cut(s) 6, 580
FspBI CTAG 3 cut(s) 210, 266, 350
GlaI GCGC 1 cut(s) 497
GluI GCNGC 2 cut(s) 6, 580
GsuI CTGGAG 1 cut(s) 450
HaeII RGCGCY 1 cut(s) 499
HaeIII GGCC 3 cut(s) 20, 80, 548
HapII CCGG 1 cut(s) 96
HgaI GACGC 1 cut(s) 233
HhaI GCGC 1 cut(s) 498
Hin1II CATG 3 cut(s) 79, 331, 367
Hin6I GCGC 1 cut(s) 496
HinP1I GCGC 1 cut(s) 496
HincII GTYRAC 2 cut(s) 93, 223
HindII GTYRAC 2 cut(s) 93, 223
HinfI GANTC 4 cut(s) 137, 245, 367, 407
HpaI GTTAAC 1 cut(s) 93
HpaII CCGG 1 cut(s) 96
Hpy166II GTNNAC 4 cut(s) 41, 93, 170, 223
Hpy188I TCNGA 2 cut(s) 258, 412
Hpy188III TCNNGA 5 cut(s) 266, 284, 302, 364, 429
Hpy8I GTNNAC 4 cut(s) 41, 93, 170, 223
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 1 cut(s) 93
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4IV ACGT 1 cut(s) 466
HpyCH4V TGCA 1 cut(s) 178
HpyF3I CTNAG 1 cut(s) 373
HpySE526I ACGT 1 cut(s) 466
Hsp92II CATG 3 cut(s) 79, 331, 367
HspAI GCGC 1 cut(s) 496
KspAI GTTAAC 1 cut(s) 93
Kzo9I GATC 2 cut(s) 202, 258
LmnI GCTCC 1 cut(s) 493
LpnPI CCDG 9 cut(s) 21, 48, 109, 174, 219, 243, 315, 319, 414
MabI ACCWGGT 1 cut(s) 34
MaeI CTAG 3 cut(s) 210, 266, 350
MaeII ACGT 1 cut(s) 466
MaeIII GTNAC 1 cut(s) 353
MalI GATC 2 cut(s) 204, 260
MboI GATC 2 cut(s) 202, 258
MboII GAAGA 3 cut(s) 404, 452, 569
MflI RGATCY 1 cut(s) 202
MlsI TGGCCA 1 cut(s) 20
MluCI AATT 7 cut(s) 158, 252, 294, 418, 423, 487, 585
MluNI TGGCCA 1 cut(s) 20
MnlI CCTC 8 cut(s) 382, 388, 397, 436, 464, 499, 537, 567
Mox20I TGGCCA 1 cut(s) 20
MscI TGGCCA 1 cut(s) 20
MseI TTAA 4 cut(s) 84, 92, 144, 422
Msp20I TGGCCA 1 cut(s) 20
MspI CCGG 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 36
MvaI CCWGG 1 cut(s) 36
NdeII GATC 2 cut(s) 202, 258
NlaIII CATG 3 cut(s) 79, 331, 367
NlaIV GGNNCC 1 cut(s) 204
NmuCI GTSAC 1 cut(s) 353
NspI RCATGY 1 cut(s) 331
PagI TCATGA 1 cut(s) 363
PaqCI CACCTGC 1 cut(s) 238
PciI ACATGT 1 cut(s) 327
PfeI GAWTC 4 cut(s) 137, 245, 367, 407
PkrI GCNGC 2 cut(s) 7, 581
PscI ACATGT 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 34
PspGI CCWGG 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 204
PspPI GGNCC 1 cut(s) 546
PstNI CAGNNNCTG 1 cut(s) 509
PsuI RGATCY 1 cut(s) 202
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
SalI GTCGAC 1 cut(s) 221
SaqAI TTAA 4 cut(s) 84, 92, 144, 422
SatI GCNGC 2 cut(s) 6, 580
Sau3AI GATC 2 cut(s) 202, 258
Sau96I GGNCC 1 cut(s) 546
ScrFI CCNGG 1 cut(s) 36
SetI ASST 9 cut(s) 37, 211, 232, 355, 379, 399, 469, 571, 578
SexAI ACCWGGT 1 cut(s) 34
SfcI CTRYAG 1 cut(s) 381
Sse9I AATT 7 cut(s) 158, 252, 294, 418, 423, 487, 585
SsiI CCGC 1 cut(s) 579
SspMI CTAG 3 cut(s) 210, 266, 350
StyD4I CCNGG 1 cut(s) 34
StyI CCWWGG 2 cut(s) 21, 349
TaaI ACNGT 1 cut(s) 220
TaiI ACGT 1 cut(s) 469
TaqI TCGA 1 cut(s) 222
TasI AATT 7 cut(s) 158, 252, 294, 418, 423, 487, 585
TauI GCSGC 1 cut(s) 582
TfiI GAWTC 4 cut(s) 137, 245, 367, 407
Tru1I TTAA 4 cut(s) 84, 92, 144, 422
Tru9I TTAA 4 cut(s) 84, 92, 144, 422
TseFI GTSAC 1 cut(s) 353
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 353
TspDTI ATGAA 2 cut(s) 453, 477
XapI RAATTY 2 cut(s) 252, 487
XbaI TCTAGA 1 cut(s) 265
XceI RCATGY 1 cut(s) 331
XmaJI CCTAGG 1 cut(s) 349
XmiI GTMKAC 1 cut(s) 222
XspI CTAG 3 cut(s) 210, 266, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.