Rorug02G0248700
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000240
Physical Location & Seq
Forward (+)
25920906 .. 25926910
6005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0248700.1

Sequence Viewer

Length: 801 bp
ATGGCGCCCAACAAGCGGTTCAAGAACCACAAGCCCCATAACCATCGTGGCGAATCTAGTCGAACCCGTACCCATCTTCCACATGACAGCGACTCCCTACCATCTGAACAAGCTACTGAAGAGGAGCCAATACGTCCCAAAATCCAGCTGGCCATGTGGGATTTTGGCCAATGCGATGCAAAAAGGTGCACGGGACGCAAGCTCTCAAGATTTGGATTTTTGAAAGAGTTGCGGGTGAACCATGGTTTTGGAGGCATTGTATTGAGTCCAGTGGGGACGGATTGTGTCTCAAGAGAAGATTATAGCTTAATCCAGCGAAAAGGTTTAGCTGTTGTGGATTGCTCTTGGGCACGCTTGGGTGATGTACCCTTTGTGAAGCTGCGTTGCACTGCTCCTCGCCTCTTGCCTTGGCTTGTAGCAGCAAATCCAGTAAATTATGGTCGACCATGTGAACTATCCTGCGTGGAGGCCTTATCTGCAGCTTTATTCATATGTGGGGAAGAGGAAACTGCAAATTTGTTGCTCGGAAAGTTCAAATGGGGTCATGCTTTCCTATCCCTCAACAGGGAACTTCTAAAGGCATACTCTAATTGTGAAAACAGTGCTGAGATTATTTCATTCCAAAATGCCTGGCTTGCACAGGAAAGACAAGTTCCAAAGGTTCCTACAGAAGTAGAAGGAGGAGAGAGGTCAGCTCGCAGTGATGATGAGGGTTCTTATGATTCTGACGATGGGCTTCCGCCACTTGAAAAGAATATGAATCATTTAGACTTAGAGGATAGTGATGAAGAAAGTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

266

Amino Acids

29.82

Weight (kDa)

5.58

Isoelectric Point (pI)

50.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer4_RLI PF04068 49 - 81 8.2e-14 Possible Fer4-like domain in RNase L inhibitor, RLI
Ribo_biogen_C PF04034 86 - 212 8.5e-52 Ribosome biogenesis protein, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 442
AciI CCGC 3 cut(s) 16, 232, 740
AcoI YGGCCR 2 cut(s) 150, 166
AcsI RAATTY 1 cut(s) 514
AcuI CTGAAG 1 cut(s) 138
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 70, 366
AfiI CCNNNNNNNGG 3 cut(s) 15, 564, 565
AgsI TTSAA 4 cut(s) 22, 223, 535, 749
AjnI CCWGG 1 cut(s) 629
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AluBI AGCT 8 cut(s) 113, 148, 202, 306, 329, 379, 482, 695
AluI AGCT 8 cut(s) 113, 148, 202, 306, 329, 379, 482, 695
Alw21I GWGCWC 1 cut(s) 191
Alw26I GTCTC 1 cut(s) 292
Alw44I GTGCAC 1 cut(s) 187
AoxI GGCC 3 cut(s) 150, 166, 468
ApaLI GTGCAC 1 cut(s) 187
ApeKI GCWGC 3 cut(s) 379, 419, 479
ApoI RAATTY 1 cut(s) 514
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 2 cut(s) 247, 371
BaeGI GKGCMC 2 cut(s) 191, 352
BalI TGGCCA 2 cut(s) 152, 168
BanI GGYRCC 1 cut(s) 4
Bbv12I GWGCWC 1 cut(s) 191
BbvI GCAGC 3 cut(s) 366, 431, 491
BccI CCATC 4 cut(s) 51, 81, 109, 725
BciT130I CCWGG 1 cut(s) 631
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 1 cut(s) 57
BfmI CTRYAG 2 cut(s) 477, 666
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 3 cut(s) 380, 420, 480
BlsI GCNGC 3 cut(s) 381, 421, 481
Bme1390I CCNGG 1 cut(s) 631
BmiI GGNNCC 3 cut(s) 6, 126, 663
BmrFI CCNGG 1 cut(s) 631
BmsI GCATC 1 cut(s) 166
BplI GAGNNNNNCTC 2 cut(s) 679, 711
BpuEI CTTGAG 2 cut(s) 190, 274
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 241, 407
BsaXI ACNNNNNCTCC 4 cut(s) 77, 107, 243, 273
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 564, 565
Bse1I ACTGG 2 cut(s) 269, 428
BseBI CCWGG 1 cut(s) 631
BseDI CCNNGG 2 cut(s) 241, 407
BseLI CCNNNNNNNGG 3 cut(s) 15, 564, 565
BseMII CTCAG 1 cut(s) 597
BseNI ACTGG 2 cut(s) 269, 428
BseRI GAGGAG 3 cut(s) 137, 384, 696
BseSI GKGCMC 2 cut(s) 191, 352
BseXI GCAGC 3 cut(s) 366, 431, 491
BshFI GGCC 3 cut(s) 152, 168, 470
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 191
BslFI GGGAC 3 cut(s) 120, 207, 289
BslI CCNNNNNNNGG 3 cut(s) 15, 564, 565
BsmAI GTCTC 1 cut(s) 292
BsmFI GGGAC 3 cut(s) 120, 207, 289
BsnI GGCC 3 cut(s) 152, 168, 470
Bsp1286I GDGCHC 2 cut(s) 191, 352
Bsp19I CCATGG 1 cut(s) 241
BspACI CCGC 3 cut(s) 16, 232, 740
BspANI GGCC 3 cut(s) 152, 168, 470
BspCNI CTCAG 1 cut(s) 598
BspLI GGNNCC 3 cut(s) 6, 126, 663
BspMAI CTGCAG 1 cut(s) 481
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 2 cut(s) 269, 428
BssECI CCNNGG 2 cut(s) 241, 407
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 241, 407
Bst2UI CCWGG 1 cut(s) 631
Bst4CI ACNGT 1 cut(s) 602
Bst6I CTCTTC 2 cut(s) 114, 495
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 5 cut(s) 150, 200, 352, 636, 697
BstDEI CTNAG 2 cut(s) 606, 772
BstDSI CCRYGG 1 cut(s) 241
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 292
BstMWI GCNNNNNNNGC 4 cut(s) 13, 195, 476, 635
BstNI CCWGG 1 cut(s) 631
BstSCI CCNGG 1 cut(s) 629
BstSFI CTRYAG 2 cut(s) 477, 666
BstSLI GKGCMC 2 cut(s) 191, 352
BstV1I GCAGC 3 cut(s) 366, 431, 491
BstXI CCANNNNNNTGG 1 cut(s) 248
BsuRI GGCC 3 cut(s) 152, 168, 470
BtgI CCRYGG 1 cut(s) 241
BtgZI GCGATG 1 cut(s) 189
BtsI GCAGTG 2 cut(s) 387, 706
BtsIMutI CAGTG 4 cut(s) 276, 387, 607, 706
Cac8I GCNNGC 5 cut(s) 150, 200, 352, 636, 697
CfoI GCGC 1 cut(s) 7
CseI GACGC 1 cut(s) 204
Csp6I GTAC 2 cut(s) 69, 365
CviAII CATG 5 cut(s) 83, 154, 242, 447, 545
CviQI GTAC 2 cut(s) 69, 365
DdeI CTNAG 2 cut(s) 606, 772
DinI GGCGCC 1 cut(s) 6
EaeI YGGCCR 2 cut(s) 150, 166
Eam1104I CTCTTC 2 cut(s) 114, 495
EarI CTCTTC 2 cut(s) 114, 495
EciI GGCGGA 1 cut(s) 729
Eco130I CCWWGG 2 cut(s) 241, 407
Eco147I AGGCCT 1 cut(s) 470
Eco57I CTGAAG 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 629
EcoT14I CCWWGG 2 cut(s) 241, 407
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 241, 407
FaeI CATG 5 cut(s) 86, 157, 245, 450, 548
FaqI GGGAC 3 cut(s) 120, 207, 289
FatI CATG 5 cut(s) 82, 153, 241, 446, 544
FauI CCCGC 1 cut(s) 225
FauNDI CATATG 1 cut(s) 491
FblI GTMKAC 1 cut(s) 442
Fnu4HI GCNGC 3 cut(s) 380, 420, 480
Fsp4HI GCNGC 3 cut(s) 380, 420, 480
FspBI CTAG 1 cut(s) 57
GlaI GCGC 1 cut(s) 6
GluI GCNGC 3 cut(s) 380, 420, 480
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 3 cut(s) 152, 168, 470
HgaI GACGC 1 cut(s) 204
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 5 cut(s) 86, 157, 245, 450, 548
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 443
HindII GTYRAC 1 cut(s) 443
HinfI GANTC 5 cut(s) 53, 92, 265, 722, 760
HphI GGTGA 2 cut(s) 247, 371
Hpy166II GTNNAC 4 cut(s) 189, 238, 443, 452
Hpy188I TCNGA 3 cut(s) 106, 527, 727
Hpy188III TCNNGA 3 cut(s) 22, 207, 291
Hpy8I GTNNAC 4 cut(s) 189, 238, 443, 452
HpyAV CCTTC 1 cut(s) 671
HpyCH4III ACNGT 1 cut(s) 602
HpyCH4IV ACGT 1 cut(s) 133
HpyCH4V TGCA 6 cut(s) 179, 189, 387, 479, 512, 638
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 195, 476, 635
HpyF3I CTNAG 2 cut(s) 606, 772
HpySE526I ACGT 1 cut(s) 133
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 5 cut(s) 86, 157, 245, 450, 548
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
LmnI GCTCC 2 cut(s) 124, 397
Lsp1109I GCAGC 3 cut(s) 366, 431, 491
LweI GCATC 1 cut(s) 166
MaeI CTAG 1 cut(s) 57
MaeII ACGT 1 cut(s) 133
MboII GAAGA 5 cut(s) 68, 131, 308, 512, 800
MhlI GDGCHC 2 cut(s) 191, 352
MlsI TGGCCA 2 cut(s) 152, 168
MluCI AATT 3 cut(s) 433, 514, 589
MluNI TGGCCA 2 cut(s) 152, 168
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 2 cut(s) 86, 274
Mox20I TGGCCA 2 cut(s) 152, 168
MscI TGGCCA 2 cut(s) 152, 168
MseI TTAA 1 cut(s) 308
Msp20I TGGCCA 2 cut(s) 152, 168
MspA1I CMGCKG 1 cut(s) 148
MspR9I CCNGG 1 cut(s) 631
MvaI CCWGG 1 cut(s) 631
MwoI GCNNNNNNNGC 4 cut(s) 13, 195, 476, 635
NarI GGCGCC 1 cut(s) 5
NcoI CCATGG 1 cut(s) 241
NdeI CATATG 1 cut(s) 491
NlaIII CATG 5 cut(s) 86, 157, 245, 450, 548
NlaIV GGNNCC 3 cut(s) 6, 126, 663
PceI AGGCCT 1 cut(s) 470
PfeI GAWTC 3 cut(s) 53, 722, 760
PkrI GCNGC 3 cut(s) 381, 421, 481
PleI GAGTC 2 cut(s) 86, 273
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 2 cut(s) 86, 273
Psp6I CCWGG 1 cut(s) 629
PspGI CCWGG 1 cut(s) 629
PspN4I GGNNCC 3 cut(s) 6, 126, 663
PstI CTGCAG 1 cut(s) 481
PvuII CAGCTG 1 cut(s) 148
RsaI GTAC 2 cut(s) 70, 366
RsaNI GTAC 2 cut(s) 69, 365
SalI GTCGAC 1 cut(s) 441
SaqAI TTAA 1 cut(s) 308
SatI GCNGC 3 cut(s) 380, 420, 480
SchI GAGTC 2 cut(s) 86, 274
ScrFI CCNGG 1 cut(s) 631
SduI GDGCHC 2 cut(s) 191, 352
SfaNI GCATC 1 cut(s) 166
SfcI CTRYAG 2 cut(s) 477, 666
SfoI GGCGCC 1 cut(s) 6
SmlI CTYRAG 2 cut(s) 205, 289
SmoI CTYRAG 2 cut(s) 205, 289
Sse9I AATT 3 cut(s) 433, 514, 589
SseBI AGGCCT 1 cut(s) 470
SsiI CCGC 3 cut(s) 16, 232, 740
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 57
StuI AGGCCT 1 cut(s) 470
StyD4I CCNGG 1 cut(s) 629
StyI CCWWGG 2 cut(s) 241, 407
TaaI ACNGT 1 cut(s) 602
TaiI ACGT 1 cut(s) 136
TaqI TCGA 2 cut(s) 61, 442
TasI AATT 3 cut(s) 433, 514, 589
TfiI GAWTC 3 cut(s) 53, 722, 760
Tru1I TTAA 1 cut(s) 308
Tru9I TTAA 1 cut(s) 308
TscAI CASTG 4 cut(s) 276, 394, 607, 706
TseI GCWGC 3 cut(s) 379, 419, 479
TspDTI ATGAA 4 cut(s) 478, 606, 773, 801
TspGWI ACGGA 1 cut(s) 293
TspRI CASTG 4 cut(s) 276, 394, 607, 706
VneI GTGCAC 1 cut(s) 187
XapI RAATTY 1 cut(s) 514
XcmI CCANNNNNNNNNTGG 2 cut(s) 44, 145
XmiI GTMKAC 1 cut(s) 442
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.