RLG00000002281
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
31351212 .. 31357043
5832 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002281

Sequence Viewer

Length: 381 bp
ATGAATCCCATTTTTCCTAAAAAGTGGATGGCAAAAGAGTCGGCTGTTTGGAACGACGTTTTAGTAGACGTATTTTGTGACATATGTATCAAGGAGGTGGATAACAATAATCGTCCGCATACTCATTTTAATCCGATAAACAAGGATTATGCAAAGTTAAGGAAAAAAGGAATTGCACCTGAATTTGAAGACAAGTTGGATAAGATGTTCATGGGTATTTCAGCCACTGGTAAGTATGCATATTCACCATCCTCTGCACTACCTTTCCCTGCAAGTCCACAGCAAGGTGACATTGAGGAGAACATTGAAGTGATAGATCCAGAGCGAGAGAATTTTCGAAAACTGAAATGGGAAACTGAAATGCGGAACCGTACAGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

127

Amino Acids

14.63

Weight (kDa)

6.13

Isoelectric Point (pI)

56.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 66
AciI CCGC 2 cut(s) 116, 364
AclWI GGATC 1 cut(s) 311
AcsI RAATTY 2 cut(s) 182, 331
AfaI GTAC 1 cut(s) 373
AfiI CCNNNNNNNGG 1 cut(s) 284
AgsI TTSAA 2 cut(s) 188, 308
AloI GAACNNNNNNTCC 2 cut(s) 191, 223
AlwI GGATC 1 cut(s) 311
AlwNI CAGNNNCTG 1 cut(s) 227
ApoI RAATTY 2 cut(s) 182, 331
AsuHPI GGTGA 2 cut(s) 237, 299
AsuII TTCGAA 1 cut(s) 337
BaeI ACNNNNGTAYC 2 cut(s) 70, 103
BbsI GAAGAC 1 cut(s) 195
BccI CCATC 2 cut(s) 22, 256
BcgI CGANNNNNNTGC 2 cut(s) 21, 55
BmiI GGNNCC 1 cut(s) 368
BpiI GAAGAC 1 cut(s) 195
Bpu14I TTCGAA 1 cut(s) 337
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 232
BseGI GGATG 2 cut(s) 33, 248
BseLI CCNNNNNNNGG 1 cut(s) 284
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 1 cut(s) 311
BsgI GTGCAG 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 284
Bsp119I TTCGAA 1 cut(s) 337
Bsp143I GATC 1 cut(s) 316
BspACI CCGC 2 cut(s) 116, 364
BspLI GGNNCC 1 cut(s) 368
BspPI GGATC 1 cut(s) 311
BspT104I TTCGAA 1 cut(s) 337
BsrI ACTGG 1 cut(s) 232
BssMI GATC 1 cut(s) 316
Bst4CI ACNGT 1 cut(s) 371
BstBI TTCGAA 1 cut(s) 337
BstF5I GGATG 2 cut(s) 33, 248
BstKTI GATC 1 cut(s) 319
BstMBI GATC 1 cut(s) 316
BstV2I GAAGAC 1 cut(s) 195
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
BtsCI GGATG 2 cut(s) 33, 248
BtsIMutI CAGTG 1 cut(s) 225
CaiI CAGNNNCTG 1 cut(s) 227
Csp6I GTAC 1 cut(s) 372
CviAII CATG 1 cut(s) 211
CviJI RGCY 2 cut(s) 44, 224
CviKI_1 RGCY 2 cut(s) 44, 224
CviQI GTAC 1 cut(s) 372
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
EcoT22I ATGCAT 1 cut(s) 241
FaeI CATG 1 cut(s) 214
FaiI YATR 7 cut(s) 83, 85, 120, 150, 212, 237, 241
FatI CATG 1 cut(s) 210
FauNDI CATATG 1 cut(s) 83
FblI GTMKAC 1 cut(s) 66
FokI GGATG 2 cut(s) 40, 235
Hin1II CATG 1 cut(s) 214
HinfI GANTC 2 cut(s) 4, 38
HphI GGTGA 2 cut(s) 237, 299
Hpy166II GTNNAC 2 cut(s) 67, 278
Hpy188I TCNGA 1 cut(s) 135
Hpy188III TCNNGA 1 cut(s) 320
Hpy8I GTNNAC 2 cut(s) 67, 278
Hpy99I CGWCG 1 cut(s) 59
HpyCH4III ACNGT 1 cut(s) 371
HpyCH4IV ACGT 2 cut(s) 57, 69
HpyCH4V TGCA 5 cut(s) 152, 176, 239, 257, 272
HpySE526I ACGT 2 cut(s) 57, 69
Hsp92II CATG 1 cut(s) 214
Kzo9I GATC 1 cut(s) 316
LpnPI CCDG 4 cut(s) 192, 213, 282, 333
MaeII ACGT 2 cut(s) 57, 69
MaeIII GTNAC 2 cut(s) 77, 287
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 1 cut(s) 200
MflI RGATCY 1 cut(s) 316
MluCI AATT 3 cut(s) 171, 182, 331
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 3 cut(s) 88, 262, 289
Mph1103I ATGCAT 1 cut(s) 241
MseI TTAA 2 cut(s) 129, 158
MslI CAYNNNNRTG 1 cut(s) 308
NdeI CATATG 1 cut(s) 83
NdeII GATC 1 cut(s) 316
NlaIII CATG 1 cut(s) 214
NlaIV GGNNCC 1 cut(s) 368
NmuCI GTSAC 2 cut(s) 77, 287
NsiI ATGCAT 1 cut(s) 241
NspV TTCGAA 1 cut(s) 337
PfeI GAWTC 1 cut(s) 4
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 368
PstNI CAGNNNCTG 1 cut(s) 227
PsuI RGATCY 1 cut(s) 316
RsaI GTAC 1 cut(s) 373
RsaNI GTAC 1 cut(s) 372
RseI CAYNNNNRTG 1 cut(s) 308
SaqAI TTAA 2 cut(s) 129, 158
Sau3AI GATC 1 cut(s) 316
SchI GAGTC 1 cut(s) 47
SetI ASST 6 cut(s) 60, 72, 99, 181, 265, 289
SfuI TTCGAA 1 cut(s) 337
SmiMI CAYNNNNRTG 1 cut(s) 308
Sse9I AATT 3 cut(s) 171, 182, 331
SsiI CCGC 2 cut(s) 116, 364
TaaI ACNGT 1 cut(s) 371
TaiI ACGT 2 cut(s) 60, 72
TaqI TCGA 1 cut(s) 337
TasI AATT 3 cut(s) 171, 182, 331
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 2 cut(s) 129, 158
Tru9I TTAA 2 cut(s) 129, 158
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 2 cut(s) 77, 287
Tsp45I GTSAC 2 cut(s) 77, 287
TspDTI ATGAA 2 cut(s) 17, 199
TspRI CASTG 1 cut(s) 232
XapI RAATTY 2 cut(s) 182, 331
XmiI GTMKAC 1 cut(s) 66
Zsp2I ATGCAT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.