Rmu_sc0000552.1_g000019
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000552.1
OG0000240
Physical Location & Seq
Forward (+)
50504 .. 52972
2469 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000552.1_g000019.1.cds

Sequence Viewer

Length: 945 bp
atgggaaagacgaaatccaccggtactgaaaatgagggatctggaaaacgaaaagccacatggcctgatgaggtagtagctatattttgtgatatagctgttaaggaagtggccaagggaaacagacctggtacacattttgataaaacgggatggtcaaatgttatcaaggcctttaaggagttaacgggaagggattatgataaaaggcaattgaaaaataagtgggattcacttaaaaatgattggaaattgtggagttcactattgcataaggaaactggtattggatgggatccgactaggaagactgtcgatgcacctgctgagtggtgggaatccaaaattcagatcaatccagagtatcgcagatttcgtgacgttggaattagtcctgaaatgatggctgtttatgataacatgtttaggggtagcacagccctaggtcactctgtcatgattccctcagctactatagatattgaagaggtggtggaggattctgagcataatgacatttctggagatgtagaggagatggaccaacaaggtgaaccaagagggaaaaagagaaaaactgtggagtgccaaactgggcgtagtaaagaaaaaaaagataaaggagttatgggagggccaaaggggaagaaagaaaaggtgggaggtgcagctcaattgtctaaacaaattgatcgtcttgttgaagtagtcgagagtaggagtacagctacatctgtccgtactagtacagaacaaggaactagtattcaggaggtgatgcgagttgttgcaactttaccaggagcagaaactggtaccaagctatggtggttcgcaacagagttgttttgctctcaagagaagcgagagatgttttctattatgacagatgatgatctcaagctccagtttctgattcttaatcagaaaaaagctgaaaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

314

Amino Acids

35.41

Weight (kDa)

7.65

Isoelectric Point (pI)

34.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 331
Acc36I ACCTGC 1 cut(s) 331
Acc65I GGTACC 1 cut(s) 815
AccB1I GGYRCC 1 cut(s) 815
AccB7I CCANNNNNTGG 1 cut(s) 825
AclWI GGATC 3 cut(s) 46, 290, 303
AcoI YGGCCR 1 cut(s) 111
AcsI RAATTY 1 cut(s) 345
AfaI GTAC 6 cut(s) 25, 133, 724, 742, 748, 817
AfiI CCNNNNNNNGG 1 cut(s) 825
AflIII ACRYGT 1 cut(s) 420
AgeI ACCGGT 1 cut(s) 20
AgsI TTSAA 3 cut(s) 217, 485, 704
AhlI ACTAGT 2 cut(s) 743, 761
AjnI CCWGG 2 cut(s) 127, 799
AjuI GAANNNNNNNTTGG 2 cut(s) 270, 302
AluBI AGCT 8 cut(s) 80, 98, 470, 671, 728, 823, 904, 935
AluI AGCT 8 cut(s) 80, 98, 470, 671, 728, 823, 904, 935
AlwI GGATC 3 cut(s) 46, 290, 303
AlwNI CAGNNNCTG 2 cut(s) 812, 913
AoxI GGCC 4 cut(s) 62, 111, 171, 635
ApeKI GCWGC 1 cut(s) 668
ApoI RAATTY 1 cut(s) 345
ArsI GACNNNNNNTTYG 2 cut(s) 679, 711
AsiGI ACCGGT 1 cut(s) 20
Asp718I GGTACC 1 cut(s) 815
AspA2I CCTAGG 1 cut(s) 442
AspS9I GGNCC 2 cut(s) 541, 635
AsuHPI GGTGA 2 cut(s) 563, 787
AvaII GGWCC 1 cut(s) 541
AvrII CCTAGG 1 cut(s) 442
BalI TGGCCA 1 cut(s) 113
BamHI GGATCC 1 cut(s) 295
BanI GGYRCC 1 cut(s) 815
BbsI GAAGAC 1 cut(s) 314
BbvCI CCTCAGC 1 cut(s) 466
BbvI GCAGC 1 cut(s) 680
BccI CCATC 4 cut(s) 147, 285, 397, 532
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BciT130I CCWGG 2 cut(s) 129, 801
BcuI ACTAGT 2 cut(s) 743, 761
BfaI CTAG 4 cut(s) 303, 443, 744, 762
BfmI CTRYAG 1 cut(s) 474
BfuAI ACCTGC 1 cut(s) 331
BisI GCNGC 1 cut(s) 669
BlnI CCTAGG 1 cut(s) 442
BlsI GCNGC 1 cut(s) 670
Bme1390I CCNGG 2 cut(s) 129, 801
Bme18I GGWCC 1 cut(s) 541
BmgT120I GGNCC 2 cut(s) 541, 635
BmiI GGNNCC 2 cut(s) 297, 817
BmrFI CCNGG 2 cut(s) 129, 801
BmrI ACTGGG 1 cut(s) 603
BmsI GCATC 2 cut(s) 307, 768
BmuI ACTGGG 1 cut(s) 603
BpiI GAAGAC 1 cut(s) 314
BpmI CTGGAG 2 cut(s) 543, 890
Bpu10I CCTNAGC 1 cut(s) 466
BpuEI CTTGAG 2 cut(s) 840, 884
BsaBI GATNNNNATC 1 cut(s) 894
BsaJI CCNNGG 2 cut(s) 114, 442
BsaWI WCCGGW 1 cut(s) 20
Bsc4I CCNNNNNNNGG 1 cut(s) 825
Bse118I RCCGGY 1 cut(s) 20
Bse1I ACTGG 4 cut(s) 286, 598, 817, 907
Bse8I GATNNNNATC 1 cut(s) 894
BseBI CCWGG 2 cut(s) 129, 801
BseDI CCNNGG 2 cut(s) 114, 442
BseGI GGATG 2 cut(s) 158, 296
BseJI GATNNNNATC 1 cut(s) 894
BseLI CCNNNNNNNGG 1 cut(s) 825
BseMII CTCAG 3 cut(s) 318, 480, 495
BseNI ACTGG 4 cut(s) 286, 598, 817, 907
BseRI GAGGAG 1 cut(s) 548
BseXI GCAGC 1 cut(s) 680
BsgI GTGCAG 1 cut(s) 687
BshFI GGCC 4 cut(s) 64, 113, 173, 637
BshNI GGYRCC 1 cut(s) 815
BshTI ACCGGT 1 cut(s) 20
BsiSI CCGG 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 825
BsnI GGCC 4 cut(s) 64, 113, 173, 637
Bsp143I GATC 5 cut(s) 38, 295, 351, 691, 895
BspANI GGCC 4 cut(s) 64, 113, 173, 637
BspCNI CTCAG 3 cut(s) 319, 479, 496
BspHI TCATGA 1 cut(s) 456
BspLI GGNNCC 2 cut(s) 297, 817
BspMI ACCTGC 1 cut(s) 331
BspPI GGATC 3 cut(s) 46, 290, 303
BspT107I GGYRCC 1 cut(s) 815
BsrFI RCCGGY 1 cut(s) 20
BsrI ACTGG 4 cut(s) 286, 598, 817, 907
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 2 cut(s) 114, 442
BssMI GATC 5 cut(s) 38, 295, 351, 691, 895
BssT1I CCWWGG 2 cut(s) 114, 442
Bst2UI CCWGG 2 cut(s) 129, 801
Bst4CI ACNGT 2 cut(s) 313, 580
Bst6I CTCTTC 1 cut(s) 480
BstDEI CTNAG 3 cut(s) 327, 466, 504
BstF5I GGATG 2 cut(s) 158, 296
BstKTI GATC 5 cut(s) 41, 298, 354, 694, 898
BstMBI GATC 5 cut(s) 38, 295, 351, 691, 895
BstNI CCWGG 2 cut(s) 129, 801
BstNSI RCATGY 1 cut(s) 424
BstSCI CCNGG 2 cut(s) 127, 799
BstSFI CTRYAG 1 cut(s) 474
BstV1I GCAGC 1 cut(s) 680
BstV2I GAAGAC 1 cut(s) 314
BstX2I RGATCY 2 cut(s) 38, 295
BstYI RGATCY 2 cut(s) 38, 295
BsuRI GGCC 4 cut(s) 64, 113, 173, 637
BtsCI GGATG 2 cut(s) 158, 296
BveI ACCTGC 1 cut(s) 331
CaiI CAGNNNCTG 2 cut(s) 812, 913
CciI TCATGA 1 cut(s) 456
Cfr10I RCCGGY 1 cut(s) 20
Cfr13I GGNCC 2 cut(s) 541, 635
CsiI ACCWGGT 1 cut(s) 127
Csp6I GTAC 6 cut(s) 24, 132, 723, 741, 747, 816
CspAI ACCGGT 1 cut(s) 20
CviAII CATG 3 cut(s) 60, 421, 457
CviQI GTAC 6 cut(s) 24, 132, 723, 741, 747, 816
DdeI CTNAG 3 cut(s) 327, 466, 504
DpnI GATC 5 cut(s) 40, 297, 353, 693, 897
DpnII GATC 5 cut(s) 38, 295, 351, 691, 895
EaeI YGGCCR 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Eco130I CCWWGG 2 cut(s) 114, 442
Eco147I AGGCCT 1 cut(s) 173
Eco47I GGWCC 1 cut(s) 541
EcoRII CCWGG 2 cut(s) 127, 799
EcoT14I CCWWGG 2 cut(s) 114, 442
ErhI CCWWGG 2 cut(s) 114, 442
FaeI CATG 3 cut(s) 63, 424, 460
FatI CATG 3 cut(s) 59, 420, 456
Fnu4HI GCNGC 1 cut(s) 669
FokI GGATG 2 cut(s) 165, 303
Fsp4HI GCNGC 1 cut(s) 669
FspBI CTAG 4 cut(s) 303, 443, 744, 762
GluI GCNGC 1 cut(s) 669
GsuI CTGGAG 2 cut(s) 543, 890
HaeIII GGCC 4 cut(s) 64, 113, 173, 637
HapII CCGG 1 cut(s) 21
Hin1II CATG 3 cut(s) 63, 424, 460
HincII GTYRAC 1 cut(s) 186
HindII GTYRAC 1 cut(s) 186
HinfI GANTC 5 cut(s) 230, 338, 460, 500, 916
HpaI GTTAAC 1 cut(s) 186
HpaII CCGG 1 cut(s) 21
HphI GGTGA 2 cut(s) 563, 787
Hpy166II GTNNAC 4 cut(s) 134, 186, 263, 554
Hpy188I TCNGA 5 cut(s) 300, 351, 505, 915, 927
Hpy188III TCNNGA 9 cut(s) 42, 359, 377, 395, 457, 522, 712, 770, 857
Hpy8I GTNNAC 4 cut(s) 134, 186, 263, 554
HpyAV CCTTC 1 cut(s) 186
HpyCH4III ACNGT 2 cut(s) 313, 580
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 4 cut(s) 271, 320, 668, 791
HpyF3I CTNAG 3 cut(s) 327, 466, 504
HpySE526I ACGT 1 cut(s) 381
Hsp92II CATG 3 cut(s) 63, 424, 460
KpnI GGTACC 1 cut(s) 819
KspAI GTTAAC 1 cut(s) 186
Kzo9I GATC 5 cut(s) 38, 295, 351, 691, 895
LmnI GCTCC 2 cut(s) 803, 909
Lsp1109I GCAGC 1 cut(s) 680
LweI GCATC 2 cut(s) 307, 768
MabI ACCWGGT 1 cut(s) 127
MaeI CTAG 4 cut(s) 303, 443, 744, 762
MaeII ACGT 1 cut(s) 381
MaeIII GTNAC 2 cut(s) 377, 446
MalI GATC 5 cut(s) 40, 297, 353, 693, 897
MboI GATC 5 cut(s) 38, 295, 351, 691, 895
MboII GAAGA 3 cut(s) 319, 497, 658
MfeI CAATTG 2 cut(s) 212, 674
MflI RGATCY 2 cut(s) 38, 295
MlsI TGGCCA 1 cut(s) 113
MluCI AATT 7 cut(s) 212, 251, 345, 387, 674, 687, 940
MluNI TGGCCA 1 cut(s) 113
MmeI TCCRAC 2 cut(s) 323, 364
Mox20I TGGCCA 1 cut(s) 113
MscI TGGCCA 1 cut(s) 113
MseI TTAA 5 cut(s) 102, 177, 185, 237, 921
Msp20I TGGCCA 1 cut(s) 113
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 2 cut(s) 129, 801
MunI CAATTG 2 cut(s) 212, 674
MvaI CCWGG 2 cut(s) 129, 801
NdeII GATC 5 cut(s) 38, 295, 351, 691, 895
NlaIII CATG 3 cut(s) 63, 424, 460
NlaIV GGNNCC 2 cut(s) 297, 817
NmuCI GTSAC 2 cut(s) 377, 446
NspI RCATGY 1 cut(s) 424
PagI TCATGA 1 cut(s) 456
PaqCI CACCTGC 1 cut(s) 331
PceI AGGCCT 1 cut(s) 173
PciI ACATGT 1 cut(s) 420
PcsI WCGNNNNNNNCGW 1 cut(s) 373
PfeI GAWTC 5 cut(s) 230, 338, 460, 500, 916
PflMI CCANNNNNTGG 1 cut(s) 825
PinAI ACCGGT 1 cut(s) 20
PkrI GCNGC 1 cut(s) 670
PscI ACATGT 1 cut(s) 420
Psp6I CCWGG 2 cut(s) 127, 799
PspGI CCWGG 2 cut(s) 127, 799
PspN4I GGNNCC 2 cut(s) 297, 817
PspPI GGNCC 2 cut(s) 541, 635
PstNI CAGNNNCTG 2 cut(s) 812, 913
PsuI RGATCY 2 cut(s) 38, 295
RsaI GTAC 6 cut(s) 25, 133, 724, 742, 748, 817
RsaNI GTAC 6 cut(s) 24, 132, 723, 741, 747, 816
SaqAI TTAA 5 cut(s) 102, 177, 185, 237, 921
SatI GCNGC 1 cut(s) 669
Sau3AI GATC 5 cut(s) 38, 295, 351, 691, 895
Sau96I GGNCC 2 cut(s) 541, 635
ScrFI CCNGG 2 cut(s) 129, 801
SexAI ACCWGGT 1 cut(s) 127
SfaNI GCATC 2 cut(s) 307, 768
SfcI CTRYAG 1 cut(s) 474
SinI GGWCC 1 cut(s) 541
SmlI CTYRAG 2 cut(s) 855, 899
SmoI CTYRAG 2 cut(s) 855, 899
SpeI ACTAGT 2 cut(s) 743, 761
Sse9I AATT 7 cut(s) 212, 251, 345, 387, 674, 687, 940
SseBI AGGCCT 1 cut(s) 173
SspMI CTAG 4 cut(s) 303, 443, 744, 762
StuI AGGCCT 1 cut(s) 173
StyD4I CCNGG 2 cut(s) 127, 799
StyI CCWWGG 2 cut(s) 114, 442
TaaI ACNGT 2 cut(s) 313, 580
TaiI ACGT 1 cut(s) 384
TaqI TCGA 2 cut(s) 315, 711
TasI AATT 7 cut(s) 212, 251, 345, 387, 674, 687, 940
TatI WGTACW 2 cut(s) 722, 746
TfiI GAWTC 5 cut(s) 230, 338, 460, 500, 916
Tru1I TTAA 5 cut(s) 102, 177, 185, 237, 921
Tru9I TTAA 5 cut(s) 102, 177, 185, 237, 921
TseFI GTSAC 2 cut(s) 377, 446
TseI GCWGC 1 cut(s) 668
Tsp45I GTSAC 2 cut(s) 377, 446
TspGWI ACGGA 1 cut(s) 728
Van91I CCANNNNNTGG 1 cut(s) 825
VpaK11BI GGWCC 1 cut(s) 541
XapI RAATTY 1 cut(s) 345
XceI RCATGY 1 cut(s) 424
XmaJI CCTAGG 1 cut(s) 442
XspI CTAG 4 cut(s) 303, 443, 744, 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.