Rorug02G0279900
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000240
Physical Location & Seq
Reverse (-)
30194550 .. 30195551
1002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0279900.1

Sequence Viewer

Length: 756 bp
ATGGAGGCTGTGGATGAGATGGCAGTGCGCTTGGCGGCATCGTTGGGACTGGCTAATGCTCGGAAACCGGTGGATCTCCATCCACCGCGTGGGGAAGGGTTGCATCATTCCCAGACTTATCTGGTCGGGAAACTCCTGACTGCTAGGGCTTTCAACAAGCGGTCCTTCATGGGCATGTTTAGGAGAGCTTGGAGGCTGAATGGGCGCTATACTGTCCAAGAACATGATGAGAGATTCTTGTTTACTTTGTCAGATCATTCTGATCGAAATCGAATTCTCTGGGGAGGACTGTGGGGGTTCGATCGTGCTCCTATAGTGTTGGCTCCATTTGACGGAGCAGGAGCTATAAAAGATGTTACATTGAATACTTTGGCATTTTGGATCAAGTCAGGGGCCTCCCTCTGGATTTCCATGCTGATCGATGCCTCAGATAAAGATACCATTGAATTTGATGATGGACGTTTCCGGATTACGGTGGAGATGGATTTGATGCAACCTGTCATTTTCCTGTCCAGTTTTACCATCGATGATGTCATTGATGTCGACCTCGACTTCTTTTTTGAAAATCTCTATGAGCAGTGCAGGGATTGTGGCTTACTAACTCATATTCGAACCTTGCCGGTGACGCCGGCACAGAATGTTCAAGACCTAGCGCTGAACTCGACTGCAAACCAGGAAGAACTGGTGCTCGGAGACGCTACTATGGTTGATCATGCTGGTACCAGTGAGGAAGCCGACCATGCAAATAATCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

251

Amino Acids

28.23

Weight (kDa)

4.88

Isoelectric Point (pI)

28.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 39 - 109 6.8e-06 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 719
AccB1I GGYRCC 1 cut(s) 719
AccB7I CCANNNNNTGG 1 cut(s) 89
AccI GTMKAC 1 cut(s) 543
AccII CGCG 1 cut(s) 88
AccIII TCCGGA 1 cut(s) 465
AciI CCGC 3 cut(s) 35, 86, 160
AclWI GGATC 2 cut(s) 81, 389
AcsI RAATTY 2 cut(s) 273, 446
AcyI GRCGYC 1 cut(s) 626
AdeI CACNNNGTG 1 cut(s) 89
AfaI GTAC 1 cut(s) 721
AfeI AGCGCT 1 cut(s) 654
AfiI CCNNNNNNNGG 4 cut(s) 89, 332, 402, 472
AgeI ACCGGT 1 cut(s) 67
AgsI TTSAA 5 cut(s) 154, 364, 446, 563, 644
AjnI CCWGG 1 cut(s) 672
AluBI AGCT 2 cut(s) 188, 344
AluI AGCT 2 cut(s) 188, 344
Alw21I GWGCWC 2 cut(s) 310, 690
Alw26I GTCTC 1 cut(s) 687
AlwI GGATC 2 cut(s) 81, 389
Aor13HI TCCGGA 1 cut(s) 465
Aor51HI AGCGCT 1 cut(s) 654
AoxI GGCC 1 cut(s) 393
ApoI RAATTY 2 cut(s) 273, 446
ArsI GACNNNNNNTTYG 2 cut(s) 542, 574
AsiGI ACCGGT 1 cut(s) 67
Asp718I GGTACC 1 cut(s) 719
AspLEI GCGC 3 cut(s) 30, 207, 655
AspS9I GGNCC 2 cut(s) 162, 393
AsuHPI GGTGA 1 cut(s) 634
AsuII TTCGAA 1 cut(s) 610
AvaII GGWCC 1 cut(s) 162
BanI GGYRCC 1 cut(s) 719
Bbv12I GWGCWC 2 cut(s) 310, 690
BccI CCATC 5 cut(s) 13, 87, 449, 475, 530
BciT130I CCWGG 1 cut(s) 674
BclI TGATCA 1 cut(s) 709
BcoDI GTCTC 1 cut(s) 687
BfaI CTAG 2 cut(s) 144, 650
BfmI CTRYAG 1 cut(s) 312
BfoI RGCGCY 2 cut(s) 208, 656
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 1 cut(s) 674
Bme18I GGWCC 1 cut(s) 162
BmgT120I GGNCC 2 cut(s) 162, 393
BmiI GGNNCC 3 cut(s) 324, 394, 721
BmrFI CCNGG 1 cut(s) 674
BmsI GCATC 4 cut(s) 47, 112, 412, 480
Bpu14I TTCGAA 1 cut(s) 610
Bsa29I ATCGAT 2 cut(s) 420, 525
BsaBI GATNNNNATC 2 cut(s) 78, 267
BsaHI GRCGYC 1 cut(s) 626
BsaWI WCCGGW 2 cut(s) 67, 465
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 332, 402, 472
Bse118I RCCGGY 3 cut(s) 67, 619, 628
Bse1I ACTGG 4 cut(s) 54, 513, 687, 723
Bse8I GATNNNNATC 2 cut(s) 78, 267
BseAI TCCGGA 1 cut(s) 465
BseBI CCWGG 1 cut(s) 674
BseCI ATCGAT 2 cut(s) 420, 525
BseGI GGATG 2 cut(s) 19, 79
BseJI GATNNNNATC 2 cut(s) 78, 267
BseLI CCNNNNNNNGG 4 cut(s) 89, 332, 402, 472
BseMII CTCAG 1 cut(s) 441
BseNI ACTGG 4 cut(s) 54, 513, 687, 723
BsgI GTGCAG 1 cut(s) 601
Bsh1236I CGCG 1 cut(s) 88
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 1 cut(s) 395
BshNI GGYRCC 1 cut(s) 719
BshTI ACCGGT 1 cut(s) 67
BshVI ATCGAT 2 cut(s) 420, 525
BsiEI CGRYCG 1 cut(s) 304
BsiHKAI GWGCWC 2 cut(s) 310, 690
BsiSI CCGG 4 cut(s) 68, 466, 620, 629
BslFI GGGAC 1 cut(s) 60
BslI CCNNNNNNNGG 4 cut(s) 89, 332, 402, 472
BsmAI GTCTC 1 cut(s) 687
BsmBI CGTCTC 1 cut(s) 687
BsmFI GGGAC 1 cut(s) 60
BsnI GGCC 1 cut(s) 395
Bsp119I TTCGAA 1 cut(s) 610
Bsp1286I GDGCHC 2 cut(s) 310, 690
Bsp13I TCCGGA 1 cut(s) 465
Bsp143I GATC 7 cut(s) 73, 253, 262, 301, 381, 417, 709
BspACI CCGC 3 cut(s) 35, 86, 160
BspANI GGCC 1 cut(s) 395
BspCNI CTCAG 1 cut(s) 440
BspDI ATCGAT 2 cut(s) 420, 525
BspEI TCCGGA 1 cut(s) 465
BspFNI CGCG 1 cut(s) 88
BspLI GGNNCC 3 cut(s) 324, 394, 721
BspPI GGATC 2 cut(s) 81, 389
BspT104I TTCGAA 1 cut(s) 610
BspT107I GGYRCC 1 cut(s) 719
BsrFI RCCGGY 3 cut(s) 67, 619, 628
BsrI ACTGG 4 cut(s) 54, 513, 687, 723
BssAI RCCGGY 3 cut(s) 67, 619, 628
BssMI GATC 7 cut(s) 73, 253, 262, 301, 381, 417, 709
BssNI GRCGYC 1 cut(s) 626
Bst2UI CCWGG 1 cut(s) 674
Bst4CI ACNGT 3 cut(s) 214, 291, 475
BstACI GRCGYC 1 cut(s) 626
BstBI TTCGAA 1 cut(s) 610
BstC8I GCNNGC 1 cut(s) 630
BstDEI CTNAG 1 cut(s) 427
BstF5I GGATG 2 cut(s) 19, 79
BstFNI CGCG 1 cut(s) 88
BstH2I RGCGCY 2 cut(s) 208, 656
BstHHI GCGC 3 cut(s) 30, 207, 655
BstKTI GATC 7 cut(s) 76, 256, 265, 304, 384, 420, 712
BstMAI GTCTC 1 cut(s) 687
BstMBI GATC 7 cut(s) 73, 253, 262, 301, 381, 417, 709
BstMCI CGRYCG 1 cut(s) 304
BstMWI GCNNNNNNNGC 3 cut(s) 202, 625, 740
BstNI CCWGG 1 cut(s) 674
BstNSI RCATGY 1 cut(s) 178
BstSCI CCNGG 1 cut(s) 672
BstSFI CTRYAG 1 cut(s) 312
BstUI CGCG 1 cut(s) 88
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
Bsu15I ATCGAT 2 cut(s) 420, 525
BsuRI GGCC 1 cut(s) 395
BsuTUI ATCGAT 2 cut(s) 420, 525
BtsCI GGATG 2 cut(s) 19, 79
BtsI GCAGTG 2 cut(s) 30, 584
BtsIMutI CAGTG 3 cut(s) 30, 584, 730
Cac8I GCNNGC 1 cut(s) 630
CfoI GCGC 3 cut(s) 30, 207, 655
Cfr10I RCCGGY 3 cut(s) 67, 619, 628
Cfr13I GGNCC 2 cut(s) 162, 393
ClaI ATCGAT 2 cut(s) 420, 525
CseI GACGC 2 cut(s) 634, 704
Csp6I GTAC 1 cut(s) 720
CspAI ACCGGT 1 cut(s) 67
CviAII CATG 6 cut(s) 169, 175, 224, 412, 713, 740
CviQI GTAC 1 cut(s) 720
DdeI CTNAG 1 cut(s) 427
DpnI GATC 7 cut(s) 75, 255, 264, 303, 383, 419, 711
DpnII GATC 7 cut(s) 73, 253, 262, 301, 381, 417, 709
DraIII CACNNNGTG 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 162
Eco47III AGCGCT 1 cut(s) 654
EcoO109I RGGNCCY 1 cut(s) 393
EcoRI GAATTC 1 cut(s) 273
EcoRII CCWGG 1 cut(s) 672
Esp3I CGTCTC 1 cut(s) 687
FaeI CATG 6 cut(s) 172, 178, 227, 415, 716, 743
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FaqI GGGAC 1 cut(s) 60
FatI CATG 6 cut(s) 168, 174, 223, 411, 712, 739
FbaI TGATCA 1 cut(s) 709
FblI GTMKAC 1 cut(s) 543
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 2 cut(s) 26, 66
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 2 cut(s) 144, 650
GlaI GCGC 3 cut(s) 29, 206, 654
GluI GCNGC 1 cut(s) 36
HaeII RGCGCY 2 cut(s) 208, 656
HaeIII GGCC 1 cut(s) 395
HapII CCGG 4 cut(s) 68, 466, 620, 629
HgaI GACGC 2 cut(s) 634, 704
HhaI GCGC 3 cut(s) 30, 207, 655
Hin1I GRCGYC 1 cut(s) 626
Hin1II CATG 6 cut(s) 172, 178, 227, 415, 716, 743
Hin6I GCGC 3 cut(s) 28, 205, 653
HinP1I GCGC 3 cut(s) 28, 205, 653
HincII GTYRAC 1 cut(s) 544
HindII GTYRAC 1 cut(s) 544
HinfI GANTC 1 cut(s) 234
HpaII CCGG 4 cut(s) 68, 466, 620, 629
HphI GGTGA 1 cut(s) 634
Hpy166II GTNNAC 2 cut(s) 243, 544
Hpy188I TCNGA 5 cut(s) 63, 253, 262, 430, 692
Hpy188III TCNNGA 5 cut(s) 127, 136, 403, 466, 644
Hpy8I GTNNAC 2 cut(s) 243, 544
HpyAV CCTTC 2 cut(s) 89, 175
HpyCH4III ACNGT 3 cut(s) 214, 291, 475
HpyCH4IV ACGT 1 cut(s) 460
HpyCH4V TGCA 5 cut(s) 103, 493, 582, 668, 743
HpyF10VI GCNNNNNNNGC 3 cut(s) 202, 625, 740
HpyF3I CTNAG 1 cut(s) 427
HpySE526I ACGT 1 cut(s) 460
Hsp92I GRCGYC 1 cut(s) 626
Hsp92II CATG 6 cut(s) 172, 178, 227, 415, 716, 743
HspAI GCGC 3 cut(s) 28, 205, 653
Kpn2I TCCGGA 1 cut(s) 465
KpnI GGTACC 1 cut(s) 723
KroI GCCGGC 1 cut(s) 628
KroNI GCCGGC 1 cut(s) 630
Ksp22I TGATCA 1 cut(s) 709
Kzo9I GATC 7 cut(s) 73, 253, 262, 301, 381, 417, 709
LmnI GCTCC 4 cut(s) 313, 328, 335, 341
LweI GCATC 4 cut(s) 47, 112, 412, 480
MaeI CTAG 2 cut(s) 144, 650
MaeII ACGT 1 cut(s) 460
MaeIII GTNAC 2 cut(s) 355, 622
MalI GATC 7 cut(s) 75, 255, 264, 303, 383, 419, 711
MboI GATC 7 cut(s) 73, 253, 262, 301, 381, 417, 709
MboII GAAGA 1 cut(s) 689
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 2 cut(s) 310, 690
MluCI AATT 2 cut(s) 273, 446
MnlI CCTC 7 cut(s) 186, 278, 406, 410, 436, 557, 721
MroI TCCGGA 1 cut(s) 465
MroNI GCCGGC 1 cut(s) 628
MslI CAYNNNNRTG 1 cut(s) 173
MspI CCGG 4 cut(s) 68, 466, 620, 629
MspR9I CCNGG 1 cut(s) 674
MvaI CCWGG 1 cut(s) 674
MvnI CGCG 1 cut(s) 88
MwoI GCNNNNNNNGC 3 cut(s) 202, 625, 740
NaeI GCCGGC 1 cut(s) 630
NdeII GATC 7 cut(s) 73, 253, 262, 301, 381, 417, 709
NgoMIV GCCGGC 1 cut(s) 628
NlaIII CATG 6 cut(s) 172, 178, 227, 415, 716, 743
NlaIV GGNNCC 3 cut(s) 324, 394, 721
NmuCI GTSAC 1 cut(s) 622
NspI RCATGY 1 cut(s) 178
NspV TTCGAA 1 cut(s) 610
PdiI GCCGGC 1 cut(s) 630
PfeI GAWTC 1 cut(s) 234
PflMI CCANNNNNTGG 1 cut(s) 89
PinAI ACCGGT 1 cut(s) 67
PkrI GCNGC 1 cut(s) 37
Ple19I CGATCG 1 cut(s) 304
Psp6I CCWGG 1 cut(s) 672
PspGI CCWGG 1 cut(s) 672
PspN4I GGNNCC 3 cut(s) 324, 394, 721
PspPI GGNCC 2 cut(s) 162, 393
PsuI RGATCY 1 cut(s) 73
PvuI CGATCG 1 cut(s) 304
RsaI GTAC 1 cut(s) 721
RsaNI GTAC 1 cut(s) 720
RseI CAYNNNNRTG 1 cut(s) 173
SalI GTCGAC 1 cut(s) 542
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 7 cut(s) 73, 253, 262, 301, 381, 417, 709
Sau96I GGNCC 2 cut(s) 162, 393
ScrFI CCNGG 1 cut(s) 674
SduI GDGCHC 2 cut(s) 310, 690
SetI ASST 7 cut(s) 190, 346, 463, 499, 549, 617, 651
SfaNI GCATC 4 cut(s) 47, 112, 412, 480
SfcI CTRYAG 1 cut(s) 312
SfuI TTCGAA 1 cut(s) 610
SinI GGWCC 1 cut(s) 162
SmiMI CAYNNNNRTG 1 cut(s) 173
Sse9I AATT 2 cut(s) 273, 446
SsiI CCGC 3 cut(s) 35, 86, 160
SspMI CTAG 2 cut(s) 144, 650
StyD4I CCNGG 1 cut(s) 672
TaaI ACNGT 3 cut(s) 214, 291, 475
TaiI ACGT 1 cut(s) 463
TaqI TCGA 9 cut(s) 265, 271, 300, 420, 525, 543, 549, 610, 662
TasI AATT 2 cut(s) 273, 446
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 1 cut(s) 234
TscAI CASTG 3 cut(s) 30, 584, 730
TseFI GTSAC 1 cut(s) 622
Tsp45I GTSAC 1 cut(s) 622
TspDTI ATGAA 1 cut(s) 157
TspGWI ACGGA 1 cut(s) 348
TspRI CASTG 3 cut(s) 30, 584, 730
Van91I CCANNNNNTGG 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 162
XapI RAATTY 2 cut(s) 273, 446
XceI RCATGY 1 cut(s) 178
XcmI CCANNNNNNNNNTGG 1 cut(s) 86
XmiI GTMKAC 1 cut(s) 543
XspI CTAG 2 cut(s) 144, 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.