FvH4_2g11122
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000240
Physical Location & Seq
Reverse (-)
9704944 .. 9706297
1354 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g11122.t1

Sequence Viewer

Length: 384 bp
ATGGGAAGGAAAAAGATCACTAATGACAACACTACTGAGATGACCAACCTTGAAAATGGGCAAGGTGGATCCAAAACTGCTACCTGGAATCCTCAAAGTGTAGCAATTTTTTGTGACTTGTGTATCAAAGAGGTGGGAAAAGGACAACGCCCCGGCACTCACTTTAGCAAAGAAGGATGGTCAAGTTTGGTTGCAAACTTTCATGCGGAGACTGGAAACAATTATGACAAATCACAATTGAAGAACAAGTGGGATTTGCTGAAAAAAGAATGGAAGATATGGAAAGATCTAATTGGGAAGGACACTGGCCTAGGTTGGAATCCTACTAAGAACACTGTTGATGCATCTGAGGAATGGTGGAAAAATAAAATACAGAACTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

128

Amino Acids

14.43

Weight (kDa)

9.08

Isoelectric Point (pI)

13.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 28 - 122 2.5e-27 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 206
AclWI GGATC 2 cut(s) 63, 76
AgsI TTSAA 2 cut(s) 53, 241
AjnI CCWGG 1 cut(s) 83
Alw26I GTCTC 1 cut(s) 203
AlwI GGATC 2 cut(s) 63, 76
AoxI GGCC 1 cut(s) 307
AspA2I CCTAGG 1 cut(s) 310
AsuC2I CCSGG 1 cut(s) 153
AvrII CCTAGG 1 cut(s) 310
BaeI ACNNNNGTAYC 2 cut(s) 106, 139
BamHI GGATCC 1 cut(s) 68
BccI CCATC 1 cut(s) 171
BciT130I CCWGG 1 cut(s) 85
BcnI CCSGG 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 1 cut(s) 311
BglII AGATCT 1 cut(s) 286
BlnI CCTAGG 1 cut(s) 310
Bme1390I CCNGG 2 cut(s) 85, 153
BmiI GGNNCC 1 cut(s) 70
BmrFI CCNGG 2 cut(s) 85, 153
BmsI GCATC 2 cut(s) 331, 353
BpuMI CCSGG 1 cut(s) 153
BsaJI CCNNGG 2 cut(s) 151, 310
Bse1I ACTGG 2 cut(s) 217, 310
BseBI CCWGG 1 cut(s) 85
BseDI CCNNGG 2 cut(s) 151, 310
BseGI GGATG 1 cut(s) 182
BseMII CTCAG 2 cut(s) 27, 339
BseNI ACTGG 2 cut(s) 217, 310
BshFI GGCC 1 cut(s) 309
BsiSI CCGG 1 cut(s) 153
BsmAI GTCTC 1 cut(s) 203
BsnI GGCC 1 cut(s) 309
Bsp143I GATC 3 cut(s) 15, 68, 286
BspACI CCGC 1 cut(s) 206
BspANI GGCC 1 cut(s) 309
BspCNI CTCAG 2 cut(s) 28, 340
BspLI GGNNCC 1 cut(s) 70
BspPI GGATC 2 cut(s) 63, 76
BsrI ACTGG 2 cut(s) 217, 310
BssECI CCNNGG 2 cut(s) 151, 310
BssMI GATC 3 cut(s) 15, 68, 286
BssT1I CCWWGG 1 cut(s) 310
Bst2UI CCWGG 1 cut(s) 85
Bst4CI ACNGT 1 cut(s) 337
BstDEI CTNAG 3 cut(s) 36, 327, 348
BstF5I GGATG 1 cut(s) 182
BstKTI GATC 3 cut(s) 18, 71, 289
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 3 cut(s) 15, 68, 286
BstNI CCWGG 1 cut(s) 85
BstSCI CCNGG 2 cut(s) 83, 151
BstX2I RGATCY 2 cut(s) 68, 286
BstYI RGATCY 2 cut(s) 68, 286
BsuRI GGCC 1 cut(s) 309
BtsCI GGATG 1 cut(s) 182
BtsIMutI CAGTG 2 cut(s) 303, 333
CviAII CATG 1 cut(s) 203
CviJI RGCY 1 cut(s) 309
CviKI_1 RGCY 1 cut(s) 309
DdeI CTNAG 3 cut(s) 36, 327, 348
DpnI GATC 3 cut(s) 17, 70, 288
DpnII GATC 3 cut(s) 15, 68, 286
Eco130I CCWWGG 1 cut(s) 310
EcoRII CCWGG 1 cut(s) 83
EcoT14I CCWWGG 1 cut(s) 310
EcoT22I ATGCAT 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 310
FaeI CATG 1 cut(s) 206
FaiI YATR 4 cut(s) 204, 225, 280, 382
FatI CATG 1 cut(s) 202
FokI GGATG 1 cut(s) 189
FspBI CTAG 1 cut(s) 311
HaeIII GGCC 1 cut(s) 309
HapII CCGG 1 cut(s) 153
Hin1II CATG 1 cut(s) 206
HinfI GANTC 2 cut(s) 88, 319
HpaII CCGG 1 cut(s) 153
Hpy188I TCNGA 1 cut(s) 349
HpyAV CCTTC 2 cut(s) 167, 292
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4V TGCA 2 cut(s) 194, 344
HpyF3I CTNAG 3 cut(s) 36, 327, 348
Hsp92II CATG 1 cut(s) 206
Kzo9I GATC 3 cut(s) 15, 68, 286
LpnPI CCDG 5 cut(s) 70, 97, 166, 198, 291
LweI GCATC 2 cut(s) 331, 353
MaeI CTAG 1 cut(s) 311
MaeIII GTNAC 1 cut(s) 113
MalI GATC 3 cut(s) 17, 70, 288
MboI GATC 3 cut(s) 15, 68, 286
MboII GAAGA 2 cut(s) 253, 286
MfeI CAATTG 1 cut(s) 236
MflI RGATCY 2 cut(s) 68, 286
MluCI AATT 4 cut(s) 105, 220, 236, 291
MmeI TCCRAC 1 cut(s) 296
MnlI CCTC 3 cut(s) 102, 124, 343
Mph1103I ATGCAT 1 cut(s) 346
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 2 cut(s) 85, 153
MunI CAATTG 1 cut(s) 236
MvaI CCWGG 1 cut(s) 85
NciI CCSGG 1 cut(s) 153
NdeII GATC 3 cut(s) 15, 68, 286
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 113
NsiI ATGCAT 1 cut(s) 346
PfeI GAWTC 2 cut(s) 88, 319
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 70
PsuI RGATCY 2 cut(s) 68, 286
Sau3AI GATC 3 cut(s) 15, 68, 286
ScrFI CCNGG 2 cut(s) 85, 153
SetI ASST 5 cut(s) 51, 67, 86, 135, 316
SfaNI GCATC 2 cut(s) 331, 353
Sse9I AATT 4 cut(s) 105, 220, 236, 291
SsiI CCGC 1 cut(s) 206
SspMI CTAG 1 cut(s) 311
StyD4I CCNGG 2 cut(s) 83, 151
StyI CCWWGG 1 cut(s) 310
TaaI ACNGT 1 cut(s) 337
TasI AATT 4 cut(s) 105, 220, 236, 291
TfiI GAWTC 2 cut(s) 88, 319
TscAI CASTG 2 cut(s) 310, 340
TseFI GTSAC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 191
TspRI CASTG 2 cut(s) 310, 340
XmaJI CCTAGG 1 cut(s) 310
XspI CTAG 1 cut(s) 311
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.