Rroxscaffold_2G00115370
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000240
Physical Location & Seq
Forward (+)
41586569 .. 41590617
4049 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00115370.1

Sequence Viewer

Length: 660 bp
ATGGAAAGAATTGAAGGTGAAAGACCAGTCTTGGGTGGGATCACAAGAAATGGACTATCGATGCATCTGAGGAGTGATGGCGTGGCAAAATTGAGAAAAACAAGGAATATGCAAAGTTCAAGAAAAAGGGGATTTACACCCGAGTTTGAAGTCAAGTTGGATAAGATGTTCATGGGTATTGCAGCCACCGGAAAGCATGCATATGCACCATCTTCTACACTACCCATTCCTAGAAGTTCAGAGCAAGGTGGCAACCTTGAAGGTAGTGGTGACTCTGAGGACAATGATCAACCTAAAACCACTCTACCTAAAAGAAAAAGAAATGGGAGAGCTGAGAAAGGTAAAGGAGAAATACTAAAAAAGGAAAAGGTGGGAGGTGCTGCTCATTTGGCTAAACAAATTGACCGAATGTGTGAGTCAATTGACAGTAGAAGTACAACAACTTCAATGATCAATACAGGTGTGCAGGAAGGTGGAGGGACTAGTATTAAGGAAGTGATGAAGGATGTCACTTCATTGCCTGGAGTTGAGCAGGGTAGTAGCTTGTGGTTTTTTACCACCCGGTTGTTTTTAAGTTCAGAGAAGAGAGAGATGTATTGCACCATAGACGATCCTAACTTGAAGTTGGAGTGGCTGAAATTTGAGATGAATGAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

219

Amino Acids

24.32

Weight (kDa)

9.39

Isoelectric Point (pI)

53.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 47, 605
AcsI RAATTY 1 cut(s) 638
AfaI GTAC 1 cut(s) 436
AfiI CCNNNNNNNGG 1 cut(s) 32
AgsI TTSAA 6 cut(s) 14, 120, 149, 260, 447, 622
AhlI ACTAGT 1 cut(s) 482
AjnI CCWGG 1 cut(s) 520
AloI GAACNNNNNNTCC 2 cut(s) 152, 184
AluBI AGCT 2 cut(s) 332, 543
AluI AGCT 2 cut(s) 332, 543
AlwI GGATC 2 cut(s) 47, 605
Ama87I CYCGRG 1 cut(s) 140
ApeKI GCWGC 2 cut(s) 182, 380
ApoI RAATTY 1 cut(s) 638
AsuC2I CCSGG 1 cut(s) 562
AsuHPI GGTGA 2 cut(s) 29, 281
AvaI CYCGRG 1 cut(s) 140
BarI GAAGNNNNNNTAC 2 cut(s) 427, 459
BbvI GCAGC 2 cut(s) 194, 367
BccI CCATC 2 cut(s) 71, 217
BciT130I CCWGG 1 cut(s) 522
BclI TGATCA 2 cut(s) 286, 450
BcnI CCSGG 1 cut(s) 562
BcuI ACTAGT 1 cut(s) 482
BfaI CTAG 2 cut(s) 231, 483
BisI GCNGC 2 cut(s) 183, 381
BlsI GCNGC 2 cut(s) 184, 382
Bme1390I CCNGG 2 cut(s) 522, 562
BmeT110I CYCGRG 1 cut(s) 140
BmrFI CCNGG 2 cut(s) 522, 562
BmsI GCATC 2 cut(s) 51, 73
BpmI CTGGAG 1 cut(s) 543
BpuMI CCSGG 1 cut(s) 562
Bsa29I ATCGAT 1 cut(s) 59
BsaWI WCCGGW 1 cut(s) 188
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 515
BseBI CCWGG 1 cut(s) 522
BseCI ATCGAT 1 cut(s) 59
BseGI GGATG 1 cut(s) 511
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMI GCAATG 1 cut(s) 515
BseMII CTCAG 3 cut(s) 59, 267, 324
BseNI ACTGG 1 cut(s) 26
BseRI GAGGAG 1 cut(s) 85
BseXI GCAGC 2 cut(s) 194, 367
BsgI GTGCAG 1 cut(s) 485
BshVI ATCGAT 1 cut(s) 59
BsiHKCI CYCGRG 1 cut(s) 140
BsiSI CCGG 2 cut(s) 189, 562
BslFI GGGAC 1 cut(s) 493
BslI CCNNNNNNNGG 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 493
BsoBI CYCGRG 1 cut(s) 140
Bsp143I GATC 4 cut(s) 39, 286, 450, 610
BspCNI CTCAG 3 cut(s) 60, 268, 325
BspDI ATCGAT 1 cut(s) 59
BspPI GGATC 2 cut(s) 47, 605
BsrDI GCAATG 1 cut(s) 515
BsrI ACTGG 1 cut(s) 26
BssMI GATC 4 cut(s) 39, 286, 450, 610
Bst2UI CCWGG 1 cut(s) 522
Bst4CI ACNGT 1 cut(s) 428
Bst6I CTCTTC 1 cut(s) 578
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 3 cut(s) 68, 276, 333
BstF5I GGATG 1 cut(s) 511
BstKTI GATC 4 cut(s) 42, 289, 453, 613
BstMBI GATC 4 cut(s) 39, 286, 450, 610
BstMWI GCNNNNNNNGC 1 cut(s) 389
BstNI CCWGG 1 cut(s) 522
BstNSI RCATGY 1 cut(s) 200
BstSCI CCNGG 2 cut(s) 520, 560
BstV1I GCAGC 2 cut(s) 194, 367
Bsu15I ATCGAT 1 cut(s) 59
BsuTUI ATCGAT 1 cut(s) 59
BtsCI GGATG 1 cut(s) 511
Cac8I GCNNGC 1 cut(s) 198
ClaI ATCGAT 1 cut(s) 59
Csp6I GTAC 1 cut(s) 435
CviAII CATG 2 cut(s) 172, 197
CviJI RGCY 5 cut(s) 185, 332, 392, 543, 634
CviKI_1 RGCY 5 cut(s) 185, 332, 392, 543, 634
CviQI GTAC 1 cut(s) 435
DdeI CTNAG 3 cut(s) 68, 276, 333
DpnI GATC 4 cut(s) 41, 288, 452, 612
DpnII GATC 4 cut(s) 39, 286, 450, 610
Eam1104I CTCTTC 1 cut(s) 578
EarI CTCTTC 1 cut(s) 578
Eco88I CYCGRG 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 520
EcoT22I ATGCAT 2 cut(s) 66, 202
FaeI CATG 2 cut(s) 175, 200
FaiI YATR 6 cut(s) 110, 173, 198, 202, 204, 605
FaqI GGGAC 1 cut(s) 493
FatI CATG 2 cut(s) 171, 196
FauNDI CATATG 1 cut(s) 202
FbaI TGATCA 2 cut(s) 286, 450
Fnu4HI GCNGC 2 cut(s) 183, 381
FokI GGATG 1 cut(s) 518
Fsp4HI GCNGC 2 cut(s) 183, 381
FspBI CTAG 2 cut(s) 231, 483
GluI GCNGC 2 cut(s) 183, 381
GsuI CTGGAG 1 cut(s) 543
HapII CCGG 2 cut(s) 189, 562
Hin1II CATG 2 cut(s) 175, 200
HinfI GANTC 2 cut(s) 272, 416
HpaII CCGG 2 cut(s) 189, 562
HphI GGTGA 2 cut(s) 29, 281
Hpy188I TCNGA 4 cut(s) 69, 241, 277, 580
Hpy188III TCNNGA 1 cut(s) 120
HpyAV CCTTC 4 cut(s) 8, 254, 464, 496
HpyCH4III ACNGT 1 cut(s) 428
HpyCH4V TGCA 7 cut(s) 64, 112, 182, 200, 206, 466, 600
HpyF10VI GCNNNNNNNGC 1 cut(s) 389
HpyF3I CTNAG 3 cut(s) 68, 276, 333
Hsp92II CATG 2 cut(s) 175, 200
Ksp22I TGATCA 2 cut(s) 286, 450
Kzo9I GATC 4 cut(s) 39, 286, 450, 610
LpnPI CCDG 8 cut(s) 39, 202, 444, 452, 507, 518, 534, 575
Lsp1109I GCAGC 2 cut(s) 194, 367
LweI GCATC 2 cut(s) 51, 73
MaeI CTAG 2 cut(s) 231, 483
MaeIII GTNAC 2 cut(s) 269, 508
MalI GATC 4 cut(s) 41, 288, 452, 612
MboI GATC 4 cut(s) 39, 286, 450, 610
MboII GAAGA 2 cut(s) 204, 595
MfeI CAATTG 1 cut(s) 420
MluCI AATT 5 cut(s) 9, 89, 399, 420, 638
MlyI GAGTC 2 cut(s) 266, 425
MmeI TCCRAC 2 cut(s) 138, 606
MnlI CCTC 4 cut(s) 63, 271, 368, 470
Mph1103I ATGCAT 2 cut(s) 66, 202
MseI TTAA 2 cut(s) 489, 572
MslI CAYNNNNRTG 1 cut(s) 201
MspI CCGG 2 cut(s) 189, 562
MspR9I CCNGG 2 cut(s) 522, 562
MunI CAATTG 1 cut(s) 420
MvaI CCWGG 1 cut(s) 522
MwoI GCNNNNNNNGC 1 cut(s) 389
NciI CCSGG 1 cut(s) 562
NdeI CATATG 1 cut(s) 202
NdeII GATC 4 cut(s) 39, 286, 450, 610
NlaIII CATG 2 cut(s) 175, 200
NmuCI GTSAC 2 cut(s) 269, 508
NsiI ATGCAT 2 cut(s) 66, 202
NspI RCATGY 1 cut(s) 200
PaeI GCATGC 1 cut(s) 200
PkrI GCNGC 2 cut(s) 184, 382
PleI GAGTC 2 cut(s) 266, 424
PpsI GAGTC 2 cut(s) 266, 424
Psp6I CCWGG 1 cut(s) 520
PspGI CCWGG 1 cut(s) 520
RsaI GTAC 1 cut(s) 436
RsaNI GTAC 1 cut(s) 435
RseI CAYNNNNRTG 1 cut(s) 201
SaqAI TTAA 2 cut(s) 489, 572
SatI GCNGC 2 cut(s) 183, 381
Sau3AI GATC 4 cut(s) 39, 286, 450, 610
SchI GAGTC 2 cut(s) 266, 425
ScrFI CCNGG 2 cut(s) 522, 562
SfaNI GCATC 2 cut(s) 51, 73
SmiMI CAYNNNNRTG 1 cut(s) 201
SpeI ACTAGT 1 cut(s) 482
SphI GCATGC 1 cut(s) 200
Sse9I AATT 5 cut(s) 9, 89, 399, 420, 638
SspMI CTAG 2 cut(s) 231, 483
StyD4I CCNGG 2 cut(s) 520, 560
TaaI ACNGT 1 cut(s) 428
TaqI TCGA 1 cut(s) 59
TaqII GACCGA 1 cut(s) 420
TasI AATT 5 cut(s) 9, 89, 399, 420, 638
TatI WGTACW 1 cut(s) 434
Tru1I TTAA 2 cut(s) 489, 572
Tru9I TTAA 2 cut(s) 489, 572
TseFI GTSAC 2 cut(s) 269, 508
TseI GCWGC 2 cut(s) 182, 380
Tsp45I GTSAC 2 cut(s) 269, 508
TspDTI ATGAA 3 cut(s) 160, 504, 515
XapI RAATTY 1 cut(s) 638
XceI RCATGY 1 cut(s) 200
XspI CTAG 2 cut(s) 231, 483
Zsp2I ATGCAT 2 cut(s) 66, 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.