FvH4_3g19652
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000240
Physical Location & Seq
Forward (+)
12780721 .. 12783268
2548 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g19652.t1

Sequence Viewer

Length: 897 bp
ATGGTGACGAAGAGAGATGATCGGACAAAACGACTGAATTCCACAACTGATCAACGCTTGATCGGACTCTCTGCTGAGCATTTTGGTGAGCAAAATGACGAAATTCCACAACTGATCTACAAACCAAAAGAGAGAGAACTGATGGTGACAAAGAGAGATGATCAGACAAAACGGCTGAATTCCACAATTGATCAACGCCTGATCGGACTCTCTGCTAAGCTTTCCGGTGAGCAAAACGATGAAATTCCTCCGGCGAATGTCTCCGGCGACACTATTCGTCACAGAGAAGAGAGAAAACGAGAGAGACGGTTGATCACGTTAGGTTTGGGAACTGAGATTTTTGATTTTTTCAACTATTTTTATCGATGGGGAAGAAGGTCATCTTTATTTTTGGGTTTGATGGGAAGGAAGAATTCTAATGAAATTGGGGGAAGTGGATCACAAGTTAAAGCTGTATGGAATGATTATAATGTATCCAAATTCTGTGATTTGTGCATCAACTTGGTGGATGCTGGACGTCTTCCTAATACTTATTTTGACCGAGAAGGATGGGAGATTTTGGTAGTAAATTTCAATAGAGAGACCGGCAATAACTATGATAAAACTAAATTGAAGAATAAGTGGGATTCACTTAAAATTGAATGGAAGTTGGGGAAAGACCTAATTGGCAAGGAAACTGGGTTAGGTTGGAATCCAAGCAAGGATACTGTTGATGCATCTGTCGAATGGTGGCATAGTAAGATTCAGTATGGGAATGAGAATAGCACAGTCGCTGCAGATTCGAACGATACAGAGGGGGATACACAAGAATATTGTTATGGTCGTCATGATGTCGGTGCACAAGAAATGGAAGCTTTGAGAAATTCTATAGCAACAAGTCTAATGAATGCAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

299

Amino Acids

34.26

Weight (kDa)

6.18

Isoelectric Point (pI)

32.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 153 - 245 2.3e-17 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 468
AatII GACGTC 1 cut(s) 520
AclWI GGATC 1 cut(s) 445
AcsI RAATTY 8 cut(s) 37, 102, 178, 243, 412, 479, 568, 862
AcyI GRCGYC 1 cut(s) 517
AgsI TTSAA 4 cut(s) 352, 574, 613, 641
AluBI AGCT 3 cut(s) 220, 452, 854
AluI AGCT 3 cut(s) 220, 452, 854
Alw21I GWGCWC 1 cut(s) 841
Alw26I GTCTC 3 cut(s) 265, 298, 575
Alw44I GTGCAC 1 cut(s) 837
AlwI GGATC 1 cut(s) 445
AlwNI CAGNNNCTG 1 cut(s) 773
ApaLI GTGCAC 1 cut(s) 837
ApeKI GCWGC 1 cut(s) 773
ApoI RAATTY 8 cut(s) 37, 102, 178, 243, 412, 479, 568, 862
AsuHPI GGTGA 4 cut(s) 16, 98, 157, 239
AsuII TTCGAA 1 cut(s) 782
BaeGI GKGCMC 1 cut(s) 841
BbsI GAAGAC 1 cut(s) 512
Bbv12I GWGCWC 1 cut(s) 841
BbvI GCAGC 1 cut(s) 760
BccI CCATC 4 cut(s) 136, 360, 394, 543
BceAI ACGGC 1 cut(s) 188
BciVI GTATCC 3 cut(s) 484, 697, 793
BclI TGATCA 4 cut(s) 49, 160, 190, 312
BcoDI GTCTC 3 cut(s) 265, 298, 575
BfmI CTRYAG 2 cut(s) 774, 867
BfuI GTATCC 3 cut(s) 484, 697, 793
BisI GCNGC 1 cut(s) 774
BlpI GCTNAGC 2 cut(s) 75, 216
BlsI GCNGC 1 cut(s) 775
BmrI ACTGGG 1 cut(s) 687
BmsI GCATC 4 cut(s) 499, 504, 703, 725
BmuI ACTGGG 1 cut(s) 687
BpiI GAAGAC 1 cut(s) 512
Bpu1102I GCTNAGC 2 cut(s) 75, 216
Bpu14I TTCGAA 1 cut(s) 782
Bsa29I ATCGAT 1 cut(s) 364
BsaHI GRCGYC 1 cut(s) 517
BsaI GGTCTC 1 cut(s) 575
BsaWI WCCGGW 1 cut(s) 224
Bse118I RCCGGY 1 cut(s) 584
Bse1I ACTGG 1 cut(s) 682
Bse3DI GCAATG 1 cut(s) 897
BseCI ATCGAT 1 cut(s) 364
BseGI GGATG 2 cut(s) 514, 554
BseMI GCAATG 1 cut(s) 897
BseMII CTCAG 2 cut(s) 66, 324
BseNI ACTGG 1 cut(s) 682
BseSI GKGCMC 1 cut(s) 841
BseXI GCAGC 1 cut(s) 760
BshVI ATCGAT 1 cut(s) 364
BsiHKAI GWGCWC 1 cut(s) 841
BsiSI CCGG 4 cut(s) 225, 251, 264, 585
BsmAI GTCTC 3 cut(s) 265, 298, 575
BsmBI CGTCTC 1 cut(s) 298
BsmI GAATGC 1 cut(s) 892
Bso31I GGTCTC 1 cut(s) 575
Bsp119I TTCGAA 1 cut(s) 782
Bsp1286I GDGCHC 1 cut(s) 841
Bsp143I GATC 9 cut(s) 19, 49, 60, 114, 160, 190, 201, 312, 437
Bsp1720I GCTNAGC 2 cut(s) 75, 216
BspCNI CTCAG 2 cut(s) 67, 325
BspDI ATCGAT 1 cut(s) 364
BspHI TCATGA 1 cut(s) 826
BspMAI CTGCAG 1 cut(s) 778
BspPI GGATC 1 cut(s) 445
BspT104I TTCGAA 1 cut(s) 782
BspTNI GGTCTC 1 cut(s) 575
BsrDI GCAATG 1 cut(s) 897
BsrFI RCCGGY 1 cut(s) 584
BsrI ACTGG 1 cut(s) 682
BssAI RCCGGY 1 cut(s) 584
BssMI GATC 9 cut(s) 19, 49, 60, 114, 160, 190, 201, 312, 437
BssNI GRCGYC 1 cut(s) 517
Bst4CI ACNGT 3 cut(s) 309, 709, 769
Bst6I CTCTTC 2 cut(s) 5, 282
BstACI GRCGYC 1 cut(s) 517
BstBI TTCGAA 1 cut(s) 782
BstDEI CTNAG 3 cut(s) 75, 216, 333
BstF5I GGATG 2 cut(s) 514, 554
BstKTI GATC 9 cut(s) 22, 52, 63, 117, 163, 193, 204, 315, 440
BstMAI GTCTC 3 cut(s) 265, 298, 575
BstMBI GATC 9 cut(s) 19, 49, 60, 114, 160, 190, 201, 312, 437
BstSFI CTRYAG 2 cut(s) 774, 867
BstSLI GKGCMC 1 cut(s) 841
BstV1I GCAGC 1 cut(s) 760
BstV2I GAAGAC 1 cut(s) 512
Bsu15I ATCGAT 1 cut(s) 364
BsuI GTATCC 3 cut(s) 484, 697, 793
BsuTUI ATCGAT 1 cut(s) 364
BtsCI GGATG 2 cut(s) 514, 554
CaiI CAGNNNCTG 1 cut(s) 773
CciI TCATGA 1 cut(s) 826
Cfr10I RCCGGY 1 cut(s) 584
ClaI ATCGAT 1 cut(s) 364
CviAII CATG 1 cut(s) 827
CviJI RGCY 4 cut(s) 175, 220, 452, 854
CviKI_1 RGCY 4 cut(s) 175, 220, 452, 854
DdeI CTNAG 3 cut(s) 75, 216, 333
DpnI GATC 9 cut(s) 21, 51, 62, 116, 162, 192, 203, 314, 439
DpnII GATC 9 cut(s) 19, 49, 60, 114, 160, 190, 201, 312, 437
Eam1104I CTCTTC 2 cut(s) 5, 282
EarI CTCTTC 2 cut(s) 5, 282
Eco31I GGTCTC 1 cut(s) 575
EcoRI GAATTC 3 cut(s) 37, 178, 412
EcoT22I ATGCAT 1 cut(s) 718
Esp3I CGTCTC 1 cut(s) 298
FaeI CATG 1 cut(s) 830
FaiI YATR 8 cut(s) 457, 468, 597, 735, 750, 819, 828, 869
FalI AAGNNNNNCTT 2 cut(s) 367, 399
FatI CATG 1 cut(s) 826
FbaI TGATCA 4 cut(s) 49, 160, 190, 312
Fnu4HI GCNGC 1 cut(s) 774
FokI GGATG 2 cut(s) 521, 561
Fsp4HI GCNGC 1 cut(s) 774
GluI GCNGC 1 cut(s) 774
HapII CCGG 4 cut(s) 225, 251, 264, 585
Hin1I GRCGYC 1 cut(s) 517
Hin1II CATG 1 cut(s) 830
HindIII AAGCTT 2 cut(s) 218, 852
HinfI GANTC 6 cut(s) 66, 207, 626, 691, 742, 779
HpaII CCGG 4 cut(s) 225, 251, 264, 585
HphI GGTGA 4 cut(s) 16, 98, 157, 239
Hpy166II GTNNAC 1 cut(s) 839
Hpy188I TCNGA 4 cut(s) 24, 65, 165, 206
Hpy188III TCNNGA 1 cut(s) 827
Hpy8I GTNNAC 1 cut(s) 839
HpyAV CCTTC 3 cut(s) 369, 399, 539
HpyCH4III ACNGT 3 cut(s) 309, 709, 769
HpyCH4IV ACGT 2 cut(s) 317, 517
HpyCH4V TGCA 5 cut(s) 495, 716, 776, 839, 890
HpyF3I CTNAG 3 cut(s) 75, 216, 333
HpySE526I ACGT 2 cut(s) 317, 517
Hsp92I GRCGYC 1 cut(s) 517
Hsp92II CATG 1 cut(s) 830
Ksp22I TGATCA 4 cut(s) 49, 160, 190, 312
Kzo9I GATC 9 cut(s) 19, 49, 60, 114, 160, 190, 201, 312, 437
LpnPI CCDG 7 cut(s) 212, 238, 264, 277, 498, 598, 663
Lsp1109I GCAGC 1 cut(s) 760
LweI GCATC 4 cut(s) 499, 504, 703, 725
MaeII ACGT 2 cut(s) 317, 517
MaeIII GTNAC 3 cut(s) 4, 145, 278
MalI GATC 9 cut(s) 21, 51, 62, 116, 162, 192, 203, 314, 439
MboI GATC 9 cut(s) 19, 49, 60, 114, 160, 190, 201, 312, 437
MboII GAAGA 6 cut(s) 22, 299, 384, 421, 512, 625
MfeI CAATTG 1 cut(s) 186
MhlI GDGCHC 1 cut(s) 841
MlyI GAGTC 2 cut(s) 60, 201
MmeI TCCRAC 1 cut(s) 668
MnlI CCTC 2 cut(s) 258, 787
Mph1103I ATGCAT 1 cut(s) 718
MseI TTAA 2 cut(s) 447, 633
MslI CAYNNNNRTG 1 cut(s) 84
MspI CCGG 4 cut(s) 225, 251, 264, 585
MunI CAATTG 1 cut(s) 186
Mva1269I GAATGC 1 cut(s) 892
NdeII GATC 9 cut(s) 19, 49, 60, 114, 160, 190, 201, 312, 437
NlaIII CATG 1 cut(s) 830
NmuCI GTSAC 3 cut(s) 4, 145, 278
NsiI ATGCAT 1 cut(s) 718
NspV TTCGAA 1 cut(s) 782
PagI TCATGA 1 cut(s) 826
PcsI WCGNNNNNNNCGW 1 cut(s) 28
PctI GAATGC 1 cut(s) 892
PfeI GAWTC 4 cut(s) 626, 691, 742, 779
PkrI GCNGC 1 cut(s) 775
PleI GAGTC 2 cut(s) 60, 201
PpsI GAGTC 2 cut(s) 60, 201
PsiI TTATAA 1 cut(s) 468
PstI CTGCAG 1 cut(s) 778
PstNI CAGNNNCTG 1 cut(s) 773
RseI CAYNNNNRTG 1 cut(s) 84
SaqAI TTAA 2 cut(s) 447, 633
SatI GCNGC 1 cut(s) 774
Sau3AI GATC 9 cut(s) 19, 49, 60, 114, 160, 190, 201, 312, 437
SchI GAGTC 2 cut(s) 60, 201
SduI GDGCHC 1 cut(s) 841
SetI ASST 9 cut(s) 222, 320, 325, 380, 454, 520, 663, 688, 856
SfaNI GCATC 4 cut(s) 499, 504, 703, 725
SfcI CTRYAG 2 cut(s) 774, 867
SfuI TTCGAA 1 cut(s) 782
SmiMI CAYNNNNRTG 1 cut(s) 84
SspI AATATT 1 cut(s) 812
TaaI ACNGT 3 cut(s) 309, 709, 769
TaiI ACGT 2 cut(s) 320, 520
TaqI TCGA 3 cut(s) 364, 723, 782
TaqII GACCGA 1 cut(s) 555
TfiI GAWTC 4 cut(s) 626, 691, 742, 779
Tru1I TTAA 2 cut(s) 447, 633
Tru9I TTAA 2 cut(s) 447, 633
TseFI GTSAC 3 cut(s) 4, 145, 278
TseI GCWGC 1 cut(s) 773
Tsp45I GTSAC 3 cut(s) 4, 145, 278
TspDTI ATGAA 2 cut(s) 255, 435
VneI GTGCAC 1 cut(s) 837
XapI RAATTY 8 cut(s) 37, 102, 178, 243, 412, 479, 568, 862
ZraI GACGTC 1 cut(s) 518
Zsp2I ATGCAT 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.