Rmu_sc0013017.1_g000001
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013017.1
OG0000240
Physical Location & Seq
Forward (+)
1012 .. 1513
502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013017.1_g000001.1.cds

Sequence Viewer

Length: 414 bp
atggcaaacaagagtggaatacaggaaaaaggaaaggctacttggactgatcataatgtagatgtcttttgtgacctttgtatcaaggagattgagaaaggaagtcgtccaggtactcacctcacaccaaaaggttatgaaaatttgggcattaacttcgctaaagagacgggacttcaatatactaaatctcaattcaaaaataagtgggatttattaagagatcaatggaaattgtggaaagaactaattaggaaggagactggtttggggtggaaccccaaactgaaaactgtagatgcacctgatgaatggtggtgtagtaaaattcaggacaatcctgaatatgccaaattgcgtaaaaagggaattaaccctgaattggaagagaagctagatatgatgttccaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

137

Amino Acids

16.06

Weight (kDa)

8.68

Isoelectric Point (pI)

22.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 142, 327
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 1 cut(s) 382
AgsI TTSAA 2 cut(s) 179, 199
AjnI CCWGG 1 cut(s) 109
AjuI GAANNNNNNNTTGG 2 cut(s) 25, 57
AluBI AGCT 1 cut(s) 394
AluI AGCT 1 cut(s) 394
Alw26I GTCTC 2 cut(s) 161, 254
ApoI RAATTY 2 cut(s) 142, 327
AsuHPI GGTGA 1 cut(s) 110
BaeI ACNNNNGTAYC 2 cut(s) 64, 97
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BciT130I CCWGG 1 cut(s) 111
BclI TGATCA 1 cut(s) 49
BcoDI GTCTC 2 cut(s) 161, 254
BfaI CTAG 1 cut(s) 395
BfmI CTRYAG 1 cut(s) 294
Bme1390I CCNGG 1 cut(s) 111
BmiI GGNNCC 1 cut(s) 278
BmrFI CCNGG 1 cut(s) 111
BmsI GCATC 1 cut(s) 289
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse1I ACTGG 1 cut(s) 268
BseBI CCWGG 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 382
BseNI ACTGG 1 cut(s) 268
BslFI GGGAC 1 cut(s) 186
BslI CCNNNNNNNGG 1 cut(s) 382
BsmAI GTCTC 2 cut(s) 161, 254
BsmBI CGTCTC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 186
Bsp143I GATC 2 cut(s) 49, 223
BspLI GGNNCC 1 cut(s) 278
BsrI ACTGG 1 cut(s) 268
BssMI GATC 2 cut(s) 49, 223
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 295
Bst6I CTCTTC 1 cut(s) 381
BstKTI GATC 2 cut(s) 52, 226
BstMAI GTCTC 2 cut(s) 161, 254
BstMBI GATC 2 cut(s) 49, 223
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 109
BstSFI CTRYAG 1 cut(s) 294
Csp6I GTAC 1 cut(s) 114
CviJI RGCY 2 cut(s) 38, 394
CviKI_1 RGCY 2 cut(s) 38, 394
CviQI GTAC 1 cut(s) 114
DpnI GATC 2 cut(s) 51, 225
DpnII GATC 2 cut(s) 49, 223
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
EcoRII CCWGG 1 cut(s) 109
Esp3I CGTCTC 1 cut(s) 161
FaiI YATR 5 cut(s) 54, 138, 183, 348, 401
FaqI GGGAC 1 cut(s) 186
FbaI TGATCA 1 cut(s) 49
FspBI CTAG 1 cut(s) 395
HphI GGTGA 1 cut(s) 110
Hpy188III TCNNGA 2 cut(s) 332, 341
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4V TGCA 1 cut(s) 302
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 2 cut(s) 49, 223
LpnPI CCDG 8 cut(s) 8, 96, 123, 249, 317, 318, 354, 390
LweI GCATC 1 cut(s) 289
MaeI CTAG 1 cut(s) 395
MaeIII GTNAC 1 cut(s) 71
MalI GATC 2 cut(s) 51, 225
MboI GATC 2 cut(s) 49, 223
MboII GAAGA 1 cut(s) 398
MluCI AATT 8 cut(s) 142, 194, 233, 249, 327, 353, 369, 380
MnlI CCTC 1 cut(s) 131
MseI TTAA 3 cut(s) 153, 218, 372
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
NdeII GATC 2 cut(s) 49, 223
NlaIV GGNNCC 1 cut(s) 278
NmuCI GTSAC 1 cut(s) 71
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 1 cut(s) 278
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SaqAI TTAA 3 cut(s) 153, 218, 372
Sau3AI GATC 2 cut(s) 49, 223
ScrFI CCNGG 1 cut(s) 111
SetI ASST 6 cut(s) 78, 115, 123, 136, 307, 396
SfaNI GCATC 1 cut(s) 289
SfcI CTRYAG 1 cut(s) 294
Sse9I AATT 8 cut(s) 142, 194, 233, 249, 327, 353, 369, 380
SspMI CTAG 1 cut(s) 395
StyD4I CCNGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 295
TasI AATT 8 cut(s) 142, 194, 233, 249, 327, 353, 369, 380
Tru1I TTAA 3 cut(s) 153, 218, 372
Tru9I TTAA 3 cut(s) 153, 218, 372
TseFI GTSAC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 2 cut(s) 153, 324
XapI RAATTY 2 cut(s) 142, 327
XspI CTAG 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.