Rroxscaffold_3G00228870
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000240
Physical Location & Seq
Reverse (-)
13245930 .. 13292981
47052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00228870.1

Sequence Viewer

Length: 825 bp
ATGGGAAGGAAGAATACTAATGAAATTGGGGGAGGTGGATCACAAGTTAAAGCTGTATGGAATGATTATAATGTATCCAAATTTTGTTATCTGTGCATTTTGGTGGATGCTAGACGTCGTCCTAATACTCATTTTGACAAAGAAGGATGGGAGAGTTTGGTAGTAAACTTCAGTAAAGAAACCAGCAATAACTATGATAAAACTCAATTGAAGCATAAGTGGAGATCTATTAAGAGAAATATTTATACGAGAAAAAATCTTAACAAACTAGTTGGCAAGGAAACTGGTTTAGGGTGGAATCCTAGCAAGCACACTGTTGATGCACCTGCCGAATGGTGGCATAGTAAGATTCAAGTCAATCCCGAATATGCAAAACTACGTAAAAAAGGTCTTAATCTTGAATTGGAGGAGAAGCTAGATAGAATGTTTTCAAACATTATAGCCGGTGGTGAACATGTTTGGGCACCTTCTTGTGGGAACCTTCCATCTCCAAAAGCAGACATATGCAAGGATGATGTCATTCCACTTCAAGGCAGTGATGATTCGGTGGATTTTACTCCAATAGAAAGAAGTGGGGGTAAGGAAGGCGAGAAGGTGGGAGGTGCTACAAAGTTATCTCAACAAATAGATCGTTTTATTGATGTAGTTGAGAATAAAAAGCTATACTATTGCTTTGAAGCAATGAAAGCACTTGAGTCTGTCCCTTATTGCGAGCACAGGAGCACTTTGTGGTTGTTTGCAACTCGACTCTTTTTGAATAAAAAAAGAGAGAGATGTGTTGCCACCATGAAAGATGATGTAATTAAGCTTCAATGGCTTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

274

Amino Acids

31.49

Weight (kDa)

9.16

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 20 - 114 2.1e-11 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 69
AarI CACCTGC 1 cut(s) 334
AatII GACGTC 1 cut(s) 118
Acc36I ACCTGC 1 cut(s) 334
AccB1I GGYRCC 1 cut(s) 463
AclWI GGATC 1 cut(s) 46
AcsI RAATTY 1 cut(s) 80
AcuI CTGAAG 1 cut(s) 154
AcyI GRCGYC 1 cut(s) 115
AdeI CACNNNGTG 1 cut(s) 729
AfiI CCNNNNNNNGG 3 cut(s) 336, 473, 530
AflIII ACRYGT 1 cut(s) 454
AgsI TTSAA 9 cut(s) 211, 353, 401, 432, 530, 677, 757, 812, 821
AhlI ACTAGT 1 cut(s) 268
AluBI AGCT 4 cut(s) 53, 415, 661, 808
AluI AGCT 4 cut(s) 53, 415, 661, 808
Alw21I GWGCWC 2 cut(s) 717, 725
AlwI GGATC 1 cut(s) 46
ApoI RAATTY 1 cut(s) 80
Asp700I GAANNNNTTC 1 cut(s) 427
AsuHPI GGTGA 1 cut(s) 461
BaeGI GKGCMC 1 cut(s) 466
BanI GGYRCC 1 cut(s) 463
BarI GAAGNNNNNNTAC 3 cut(s) 30, 792, 824
Bbv12I GWGCWC 2 cut(s) 717, 725
BccI CCATC 2 cut(s) 141, 493
BciVI GTATCC 1 cut(s) 85
BcuI ACTAGT 1 cut(s) 268
BfaI CTAG 4 cut(s) 111, 269, 303, 416
BfuAI ACCTGC 1 cut(s) 334
BfuI GTATCC 1 cut(s) 85
BglII AGATCT 1 cut(s) 224
BmiI GGNNCC 2 cut(s) 465, 479
BmsI GCATC 2 cut(s) 97, 310
BpuEI CTTGAG 1 cut(s) 713
BsaAI YACGTR 1 cut(s) 380
BsaHI GRCGYC 1 cut(s) 115
Bsc4I CCNNNNNNNGG 3 cut(s) 336, 473, 530
Bse118I RCCGGY 1 cut(s) 443
Bse1I ACTGG 1 cut(s) 289
Bse3DI GCAATG 1 cut(s) 687
BseGI GGATG 3 cut(s) 112, 152, 517
BseLI CCNNNNNNNGG 3 cut(s) 336, 473, 530
BseMI GCAATG 1 cut(s) 687
BseNI ACTGG 1 cut(s) 289
BseRI GAGGAG 1 cut(s) 422
BseSI GKGCMC 1 cut(s) 466
BshNI GGYRCC 1 cut(s) 463
BsiHKAI GWGCWC 2 cut(s) 717, 725
BsiSI CCGG 1 cut(s) 444
BslFI GGGAC 1 cut(s) 686
BslI CCNNNNNNNGG 3 cut(s) 336, 473, 530
BsmFI GGGAC 1 cut(s) 686
Bsp1286I GDGCHC 3 cut(s) 466, 717, 725
Bsp143I GATC 3 cut(s) 38, 224, 628
BspLI GGNNCC 2 cut(s) 465, 479
BspMI ACCTGC 1 cut(s) 334
BspPI GGATC 1 cut(s) 46
BspT107I GGYRCC 1 cut(s) 463
BsrDI GCAATG 1 cut(s) 687
BsrFI RCCGGY 1 cut(s) 443
BsrI ACTGG 1 cut(s) 289
BssAI RCCGGY 1 cut(s) 443
BssMI GATC 3 cut(s) 38, 224, 628
BssNI GRCGYC 1 cut(s) 115
Bst4CI ACNGT 1 cut(s) 316
BstACI GRCGYC 1 cut(s) 115
BstBAI YACGTR 1 cut(s) 380
BstC8I GCNNGC 2 cut(s) 308, 713
BstF5I GGATG 3 cut(s) 112, 152, 517
BstKTI GATC 3 cut(s) 41, 227, 631
BstMBI GATC 3 cut(s) 38, 224, 628
BstMWI GCNNNNNNNGC 2 cut(s) 686, 814
BstNSI RCATGY 1 cut(s) 458
BstSLI GKGCMC 1 cut(s) 466
BstSNI TACGTA 1 cut(s) 380
BstX2I RGATCY 1 cut(s) 224
BstYI RGATCY 1 cut(s) 224
BsuI GTATCC 1 cut(s) 85
BtsCI GGATG 3 cut(s) 112, 152, 517
BtsI GCAGTG 1 cut(s) 541
BtsIMutI CAGTG 2 cut(s) 312, 541
BveI ACCTGC 1 cut(s) 334
Cac8I GCNNGC 2 cut(s) 308, 713
Cfr10I RCCGGY 1 cut(s) 443
CviAII CATG 2 cut(s) 455, 787
CviJI RGCY 6 cut(s) 53, 415, 443, 661, 808, 817
CviKI_1 RGCY 6 cut(s) 53, 415, 443, 661, 808, 817
DpnI GATC 3 cut(s) 40, 226, 630
DpnII GATC 3 cut(s) 38, 224, 628
DraIII CACNNNGTG 1 cut(s) 729
Eco105I TACGTA 1 cut(s) 380
Eco57I CTGAAG 1 cut(s) 154
FaeI CATG 2 cut(s) 458, 790
FaqI GGGAC 1 cut(s) 686
FatI CATG 2 cut(s) 454, 786
FauNDI CATATG 1 cut(s) 503
FokI GGATG 3 cut(s) 119, 159, 524
FspBI CTAG 4 cut(s) 111, 269, 303, 416
HapII CCGG 1 cut(s) 444
Hin1I GRCGYC 1 cut(s) 115
Hin1II CATG 2 cut(s) 458, 790
HindIII AAGCTT 1 cut(s) 806
HinfI GANTC 5 cut(s) 298, 349, 542, 695, 747
HpaII CCGG 1 cut(s) 444
HphI GGTGA 1 cut(s) 461
Hpy166II GTNNAC 2 cut(s) 166, 452
Hpy188III TCNNGA 2 cut(s) 362, 398
Hpy8I GTNNAC 2 cut(s) 166, 452
Hpy99I CGWCG 1 cut(s) 120
HpyAV CCTTC 5 cut(s) 137, 477, 491, 578, 586
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4IV ACGT 2 cut(s) 115, 379
HpyCH4V TGCA 5 cut(s) 96, 323, 371, 507, 740
HpyF10VI GCNNNNNNNGC 2 cut(s) 686, 814
HpySE526I ACGT 2 cut(s) 115, 379
Hsp92I GRCGYC 1 cut(s) 115
Hsp92II CATG 2 cut(s) 458, 790
Kzo9I GATC 3 cut(s) 38, 224, 628
LmnI GCTCC 1 cut(s) 720
LpnPI CCDG 5 cut(s) 196, 270, 339, 457, 703
LweI GCATC 2 cut(s) 97, 310
MaeI CTAG 4 cut(s) 111, 269, 303, 416
MaeII ACGT 2 cut(s) 115, 379
MalI GATC 3 cut(s) 40, 226, 630
MboI GATC 3 cut(s) 38, 224, 628
MboII GAAGA 1 cut(s) 22
MfeI CAATTG 1 cut(s) 206
MflI RGATCY 1 cut(s) 224
MhlI GDGCHC 3 cut(s) 466, 717, 725
MluCI AATT 5 cut(s) 24, 80, 206, 401, 801
MlyI GAGTC 2 cut(s) 704, 741
MnlI CCTC 3 cut(s) 26, 400, 593
MroXI GAANNNNTTC 1 cut(s) 427
MseI TTAA 5 cut(s) 48, 231, 261, 393, 804
MslI CAYNNNNRTG 1 cut(s) 101
MspI CCGG 1 cut(s) 444
MunI CAATTG 1 cut(s) 206
MwoI GCNNNNNNNGC 2 cut(s) 686, 814
NdeI CATATG 1 cut(s) 503
NdeII GATC 3 cut(s) 38, 224, 628
NlaIII CATG 2 cut(s) 458, 790
NlaIV GGNNCC 2 cut(s) 465, 479
NspI RCATGY 1 cut(s) 458
PaqCI CACCTGC 1 cut(s) 334
PciI ACATGT 1 cut(s) 454
PdmI GAANNNNTTC 1 cut(s) 427
PfeI GAWTC 3 cut(s) 298, 349, 542
PflFI GACNNNGTC 1 cut(s) 117
PleI GAGTC 2 cut(s) 703, 741
PpsI GAGTC 2 cut(s) 703, 741
Ppu21I YACGTR 1 cut(s) 380
PscI ACATGT 1 cut(s) 454
PsiI TTATAA 1 cut(s) 69
PspN4I GGNNCC 2 cut(s) 465, 479
PsuI RGATCY 1 cut(s) 224
PsyI GACNNNGTC 1 cut(s) 117
RseI CAYNNNNRTG 1 cut(s) 101
SaqAI TTAA 5 cut(s) 48, 231, 261, 393, 804
Sau3AI GATC 3 cut(s) 38, 224, 628
SchI GAGTC 2 cut(s) 704, 741
SduI GDGCHC 3 cut(s) 466, 717, 725
SfaNI GCATC 2 cut(s) 97, 310
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 692
SmoI CTYRAG 1 cut(s) 692
SnaBI TACGTA 1 cut(s) 380
SpeI ACTAGT 1 cut(s) 268
Sse9I AATT 5 cut(s) 24, 80, 206, 401, 801
SspI AATATT 1 cut(s) 241
SspMI CTAG 4 cut(s) 111, 269, 303, 416
TaaI ACNGT 1 cut(s) 316
TaiI ACGT 2 cut(s) 118, 382
TaqI TCGA 1 cut(s) 745
TasI AATT 5 cut(s) 24, 80, 206, 401, 801
TfiI GAWTC 3 cut(s) 298, 349, 542
Tru1I TTAA 5 cut(s) 48, 231, 261, 393, 804
Tru9I TTAA 5 cut(s) 48, 231, 261, 393, 804
TscAI CASTG 2 cut(s) 319, 541
TspDTI ATGAA 3 cut(s) 36, 698, 803
TspRI CASTG 2 cut(s) 319, 541
Tth111I GACNNNGTC 1 cut(s) 117
XapI RAATTY 1 cut(s) 80
XceI RCATGY 1 cut(s) 458
XmnI GAANNNNTTC 1 cut(s) 427
XspI CTAG 4 cut(s) 111, 269, 303, 416
ZraI GACGTC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.