Rroxscaffold_7G00186490
MYB Family

nuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000240
Physical Location & Seq
Reverse (-)
25853985 .. 25854606
622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00186490.1

Sequence Viewer

Length: 402 bp
ATGAAAAATAAATGGGATTCCCTCAAAGATCATTGGAAATTATGGAAAGATTTGAAGGGAAAAGAGACCGGTCTTGGGTGGGATCACAAGCGTCAAACTATAGATGCATCCGATGAGTGGTGGCGCCTCAAGATTGAGAAAAACAAGGAATATGGAAAGTTAAAGAAAAAGGGAATTCCACCTAATTTTGAAGACAAGTTGGATAAGATGTTCATGGATATTTCAGCCACTGGTCAGCATGCATATTCACCATCTTCTGCACTACCTATCCCTAGAAGTCCACAGCAAGGTAACAATGAGGTGAACCTTGAAGGTAGTGGTGACTCGAGGACAATGATGATTTGGCCCCCGCTCTGCCTAAAAGAAAAAGAAATGAGAGAGCTGAGAAAGGTAAAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

133

Amino Acids

15.64

Weight (kDa)

9.36

Isoelectric Point (pI)

38.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 1 - 42 2.3e-07 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 123
AccBSI CCGCTC 1 cut(s) 352
AciI CCGC 1 cut(s) 350
AclWI GGATC 1 cut(s) 90
AcsI RAATTY 1 cut(s) 174
AcyI GRCGYC 1 cut(s) 124
AfiI CCNNNNNNNGG 3 cut(s) 75, 117, 287
AgeI ACCGGT 1 cut(s) 68
AgsI TTSAA 3 cut(s) 55, 191, 311
AloI GAACNNNNNNTCC 2 cut(s) 194, 226
AluBI AGCT 1 cut(s) 382
AluI AGCT 1 cut(s) 382
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 1 cut(s) 90
AlwNI CAGNNNCTG 1 cut(s) 230
Ama87I CYCGRG 1 cut(s) 325
AoxI GGCC 1 cut(s) 344
ApoI RAATTY 1 cut(s) 174
AsiGI ACCGGT 1 cut(s) 68
AspLEI GCGC 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 345
AsuHPI GGTGA 3 cut(s) 240, 313, 332
AvaI CYCGRG 1 cut(s) 325
BanI GGYRCC 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 198
BccI CCATC 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 1 cut(s) 273
BfmI CTRYAG 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 127
BmeT110I CYCGRG 1 cut(s) 325
BmgT120I GGNCC 1 cut(s) 345
BmiI GGNNCC 2 cut(s) 125, 347
BmsI GCATC 2 cut(s) 94, 116
BpiI GAAGAC 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 124
BsaI GGTCTC 1 cut(s) 59
BsaWI WCCGGW 1 cut(s) 68
Bsc4I CCNNNNNNNGG 3 cut(s) 75, 117, 287
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 235
BseGI GGATG 1 cut(s) 107
BseLI CCNNNNNNNGG 3 cut(s) 75, 117, 287
BseMII CTCAG 1 cut(s) 374
BseNI ACTGG 1 cut(s) 235
BsgI GTGCAG 1 cut(s) 243
BshFI GGCC 1 cut(s) 346
BshNI GGYRCC 1 cut(s) 123
BshTI ACCGGT 1 cut(s) 68
BsiHKCI CYCGRG 1 cut(s) 325
BsiSI CCGG 1 cut(s) 69
BslI CCNNNNNNNGG 3 cut(s) 75, 117, 287
BsmAI GTCTC 1 cut(s) 59
BsnI GGCC 1 cut(s) 346
Bso31I GGTCTC 1 cut(s) 59
BsoBI CYCGRG 1 cut(s) 325
Bsp143I GATC 2 cut(s) 28, 82
BspACI CCGC 1 cut(s) 350
BspANI GGCC 1 cut(s) 346
BspCNI CTCAG 1 cut(s) 375
BspLI GGNNCC 2 cut(s) 125, 347
BspPI GGATC 1 cut(s) 90
BspT107I GGYRCC 1 cut(s) 123
BspTNI GGTCTC 1 cut(s) 59
BsrBI CCGCTC 1 cut(s) 352
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 1 cut(s) 235
BssAI RCCGGY 1 cut(s) 68
BssMI GATC 2 cut(s) 28, 82
BssNI GRCGYC 1 cut(s) 124
BstACI GRCGYC 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 1 cut(s) 383
BstF5I GGATG 1 cut(s) 107
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 2 cut(s) 31, 85
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 2 cut(s) 28, 82
BstNSI RCATGY 1 cut(s) 242
BstSFI CTRYAG 1 cut(s) 99
BstV2I GAAGAC 1 cut(s) 198
BsuRI GGCC 1 cut(s) 346
BtsCI GGATG 1 cut(s) 107
BtsIMutI CAGTG 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 240
CaiI CAGNNNCTG 1 cut(s) 230
CfoI GCGC 1 cut(s) 126
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 345
CseI GACGC 1 cut(s) 80
CspAI ACCGGT 1 cut(s) 68
CviAII CATG 2 cut(s) 214, 239
CviJI RGCY 3 cut(s) 227, 346, 382
CviKI_1 RGCY 3 cut(s) 227, 346, 382
DdeI CTNAG 1 cut(s) 383
DinI GGCGCC 1 cut(s) 125
DpnI GATC 2 cut(s) 30, 84
DpnII GATC 2 cut(s) 28, 82
Eco31I GGTCTC 1 cut(s) 59
Eco88I CYCGRG 1 cut(s) 325
EcoRI GAATTC 1 cut(s) 174
EcoT22I ATGCAT 2 cut(s) 109, 244
EgeI GGCGCC 1 cut(s) 125
EheI GGCGCC 1 cut(s) 125
FaeI CATG 2 cut(s) 217, 242
FaiI YATR 6 cut(s) 43, 101, 153, 215, 240, 244
FatI CATG 2 cut(s) 213, 238
FauI CCCGC 1 cut(s) 357
FokI GGATG 1 cut(s) 94
FspBI CTAG 1 cut(s) 273
GlaI GCGC 1 cut(s) 125
HaeII RGCGCY 1 cut(s) 127
HaeIII GGCC 1 cut(s) 346
HapII CCGG 1 cut(s) 69
HgaI GACGC 1 cut(s) 80
HhaI GCGC 1 cut(s) 126
Hin1I GRCGYC 1 cut(s) 124
Hin1II CATG 2 cut(s) 217, 242
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HinfI GANTC 2 cut(s) 17, 323
HpaII CCGG 1 cut(s) 69
HphI GGTGA 3 cut(s) 240, 313, 332
Hpy166II GTNNAC 2 cut(s) 281, 304
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 1 cut(s) 130
Hpy8I GTNNAC 2 cut(s) 281, 304
HpyAV CCTTC 2 cut(s) 49, 305
HpyCH4V TGCA 3 cut(s) 107, 242, 260
HpyF3I CTNAG 1 cut(s) 383
Hsp92I GRCGYC 1 cut(s) 124
Hsp92II CATG 2 cut(s) 217, 242
HspAI GCGC 1 cut(s) 124
KasI GGCGCC 1 cut(s) 123
Kzo9I GATC 2 cut(s) 28, 82
LpnPI CCDG 2 cut(s) 82, 216
LweI GCATC 2 cut(s) 94, 116
MaeI CTAG 1 cut(s) 273
MaeIII GTNAC 2 cut(s) 290, 320
MalI GATC 2 cut(s) 30, 84
MbiI CCGCTC 1 cut(s) 352
MboI GATC 2 cut(s) 28, 82
MboII GAAGA 2 cut(s) 203, 246
MluCI AATT 3 cut(s) 38, 174, 184
Mly113I GGCGCC 1 cut(s) 124
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 4 cut(s) 32, 137, 292, 321
Mph1103I ATGCAT 2 cut(s) 109, 244
MseI TTAA 1 cut(s) 161
MspI CCGG 1 cut(s) 69
NarI GGCGCC 1 cut(s) 124
NdeII GATC 2 cut(s) 28, 82
NlaIII CATG 2 cut(s) 217, 242
NlaIV GGNNCC 2 cut(s) 125, 347
NmuCI GTSAC 1 cut(s) 320
NsiI ATGCAT 2 cut(s) 109, 244
NspI RCATGY 1 cut(s) 242
PaeI GCATGC 1 cut(s) 242
PaeR7I CTCGAG 1 cut(s) 325
PfeI GAWTC 1 cut(s) 17
PinAI ACCGGT 1 cut(s) 68
PleI GAGTC 1 cut(s) 317
PluTI GGCGCC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 317
PspN4I GGNNCC 2 cut(s) 125, 347
PspPI GGNCC 1 cut(s) 345
PspXI VCTCGAGB 1 cut(s) 325
PstNI CAGNNNCTG 1 cut(s) 230
SaqAI TTAA 1 cut(s) 161
Sau3AI GATC 2 cut(s) 28, 82
Sau96I GGNCC 1 cut(s) 345
SchI GAGTC 1 cut(s) 317
SetI ASST 8 cut(s) 184, 268, 292, 303, 309, 316, 384, 393
SfaNI GCATC 2 cut(s) 94, 116
SfcI CTRYAG 1 cut(s) 99
SfoI GGCGCC 1 cut(s) 125
Sfr274I CTCGAG 1 cut(s) 325
SlaI CTCGAG 1 cut(s) 325
SmlI CTYRAG 2 cut(s) 128, 325
SmoI CTYRAG 2 cut(s) 128, 325
SphI GCATGC 1 cut(s) 242
Sse9I AATT 3 cut(s) 38, 174, 184
SsiI CCGC 1 cut(s) 350
SspDI GGCGCC 1 cut(s) 123
SspMI CTAG 1 cut(s) 273
TaqI TCGA 1 cut(s) 326
TasI AATT 3 cut(s) 38, 174, 184
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TscAI CASTG 1 cut(s) 235
TseFI GTSAC 1 cut(s) 320
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 2 cut(s) 17, 202
TspRI CASTG 1 cut(s) 235
XapI RAATTY 1 cut(s) 174
XceI RCATGY 1 cut(s) 242
XhoI CTCGAG 1 cut(s) 325
XspI CTAG 1 cut(s) 273
Zsp2I ATGCAT 2 cut(s) 109, 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.